Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30602 * 1 3 3 Si 1.86806 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46822 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47096 * 300.00268 * 3 2 1 6 6 H 1.48501 * 109.46842 * 60.00557 * 3 2 1 7 7 C 1.40202 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.40682 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21981 * 119.99776 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00157 * 180.02562 * 9 7 2 12 12 N 1.40108 * 119.99946 * 179.97438 * 11 9 7 13 13 C 1.30700 * 119.99995 * 179.97438 * 12 11 9 14 14 C 1.46733 * 120.00029 * 180.02562 * 13 12 11 15 15 C 1.40257 * 120.12758 * 179.97438 * 14 13 12 16 16 C 1.36595 * 119.87190 * 179.97438 * 15 14 13 17 17 C 1.39202 * 120.12715 * 0.25983 * 16 15 14 18 18 O 1.35683 * 119.87263 * 179.74569 * 17 16 15 19 19 C 1.42898 * 116.99871 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47153 * 179.97438 * 19 18 17 21 21 O 1.21285 * 119.99415 * 359.97438 * 20 19 18 22 22 N 1.34769 * 120.00402 * 179.97438 * 20 19 18 23 23 C 1.46493 * 120.00262 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47385 * 180.02562 * 23 22 20 25 25 H 1.08997 * 109.82261 * 305.70330 * 24 23 22 26 26 C 1.54381 * 109.83218 * 184.81393 * 24 23 22 27 27 C 1.55454 * 102.18441 * 219.17963 * 26 24 23 28 28 C 1.54943 * 100.99021 * 34.04072 * 27 26 24 29 29 O 1.43236 * 109.82841 * 66.58489 * 24 23 22 30 30 C 1.39201 * 120.25054 * 359.48605 * 17 16 15 31 31 C 1.36582 * 120.13261 * 0.50971 * 30 17 16 32 32 H 0.97005 * 119.99822 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00121 * 0.02562 * 11 9 7 34 34 H 1.08000 * 119.99647 * 0.02562 * 13 12 11 35 35 H 1.07999 * 120.06395 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.93338 * 179.97438 * 16 15 14 37 37 H 1.08994 * 109.47453 * 299.99337 * 19 18 17 38 38 H 1.08999 * 109.47318 * 60.00096 * 19 18 17 39 39 H 0.97006 * 119.99540 * 0.02562 * 22 20 19 40 40 H 1.09007 * 109.47122 * 299.99974 * 23 22 20 41 41 H 1.08997 * 109.47711 * 59.99775 * 23 22 20 42 42 H 1.09004 * 110.84718 * 337.31934 * 26 24 23 43 43 H 1.09003 * 110.84882 * 100.93875 * 26 24 23 44 44 H 1.08997 * 111.06304 * 276.12126 * 27 26 24 45 45 H 1.09001 * 111.17863 * 152.00688 * 27 26 24 46 46 H 1.08997 * 110.31416 * 204.69042 * 28 27 26 47 47 H 1.09005 * 110.39757 * 82.56078 * 28 27 26 48 48 H 1.08008 * 119.93005 * 180.23544 * 30 17 16 49 49 H 1.08003 * 120.06937 * 179.71863 * 31 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7001 1.3463 -0.0006 5 1 1.8813 2.3965 -1.2124 6 1 1.8814 2.3964 1.2126 7 6 2.0070 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0010 9 6 1.3036 -2.4326 -0.0016 10 8 0.0838 -2.4325 -0.0016 11 7 1.9774 -3.5997 -0.0016 12 7 1.2768 -4.8131 -0.0022 13 6 1.9303 -5.9450 -0.0027 14 6 1.1966 -7.2157 -0.0038 15 6 1.8952 -8.4319 -0.0049 16 6 1.2069 -9.6118 -0.0054 17 6 -0.1851 -9.6087 -0.0103 18 8 -0.8636 -10.7837 -0.0161 19 6 -2.2906 -10.7088 -0.0203 20 6 -2.8667 -12.1014 -0.0270 21 8 -2.1278 -13.0632 -0.0285 22 7 -4.2027 -12.2780 -0.0314 23 6 -4.7627 -13.6317 -0.0373 24 6 -6.2906 -13.5516 -0.0420 25 1 -6.6311 -12.9372 0.7914 26 6 -6.8898 -14.9697 0.0736 27 6 -8.1038 -14.8928 -0.8943 28 6 -7.5516 -13.9418 -1.9858 29 8 -6.7438 -12.9877 -1.2782 30 6 -0.8837 -8.4047 -0.0040 31 6 -0.2060 -7.2188 -0.0034 32 1 -0.4850 0.8401 0.0004 33 1 2.9474 -3.5998 -0.0005 34 1 3.0103 -5.9449 -0.0023 35 1 2.9752 -8.4356 -0.0045 36 1 1.7438 -10.5489 -0.0067 37 1 -2.6293 -10.1795 0.8702 38 1 -2.6237 -10.1740 -0.9097 39 1 -4.7936 -11.5086 -0.0306 40 1 -4.4243 -14.1610 -0.9281 41 1 -4.4293 -14.1668 0.8518 42 1 -6.1746 -15.7214 -0.2604 43 1 -7.2173 -15.1705 1.0937 44 1 -8.9729 -14.4599 -0.3991 45 1 -8.3390 -15.8728 -1.3096 46 1 -8.3710 -13.4377 -2.4982 47 1 -6.9433 -14.4962 -2.7005 48 1 -1.9637 -8.4083 -0.0040 49 1 -0.7491 -6.2852 -0.0030 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028214276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -87.413129 kcal Electronic energy + Delta-G solvation = -31245.431499 eV Core-core repulsion = 26560.052774 eV Total energy + Delta-G solvation = -4685.378725 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.66984 -40.14446 -39.32054 -37.80686 -37.26364 -35.20324 -34.99270 -32.81762 -32.67191 -31.65449 -31.16497 -31.02236 -29.38107 -28.24349 -26.46242 -25.72653 -23.38246 -22.76187 -22.32802 -21.80949 -20.87867 -20.50781 -19.64895 -18.43492 -17.78372 -17.62239 -17.54283 -16.60701 -16.55550 -16.25017 -16.19519 -15.64610 -15.35902 -15.12813 -15.03049 -14.69635 -14.26936 -14.04144 -13.98903 -13.83028 -13.47607 -13.32343 -13.29074 -12.97307 -12.77035 -12.66148 -12.54040 -12.41579 -12.04800 -11.84053 -11.81462 -11.61547 -11.49584 -11.39720 -11.18798 -10.81031 -10.66286 -10.64095 -10.34949 -10.18464 -10.14100 -9.55165 -9.48688 -9.05157 -8.99467 -8.43206 -7.77110 -7.12691 -6.40975 -4.95906 1.14099 1.54313 2.20728 2.24457 2.87012 3.04446 3.10568 3.13413 3.15652 3.45814 3.72970 3.80222 4.02481 4.07057 4.09420 4.21763 4.28216 4.44339 4.49413 4.53752 4.66146 4.70637 4.75794 4.90217 4.96253 4.99971 5.02757 5.06416 5.15626 5.17754 5.25763 5.35297 5.41650 5.48530 5.51691 5.73740 5.75770 5.88099 5.90386 6.15439 6.35345 6.37941 6.43089 6.64858 6.75503 6.90081 7.00837 7.20072 7.35019 7.79480 7.83461 7.98587 8.68361 8.75830 9.29403 10.38131 10.63861 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001191 C = 0.001107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.307202 B =23504.427176 C =25279.624817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.557 3.443 10 O -0.554 6.554 11 N -0.589 5.589 12 N -0.191 5.191 13 C 0.020 3.980 14 C -0.055 4.055 15 C -0.068 4.068 16 C -0.147 4.147 17 C 0.119 3.881 18 O -0.292 6.292 19 C 0.041 3.959 20 C 0.518 3.482 21 O -0.519 6.519 22 N -0.723 5.723 23 C 0.113 3.887 24 C 0.067 3.933 25 H 0.090 0.910 26 C -0.148 4.148 27 C -0.156 4.156 28 C 0.049 3.951 29 O -0.375 6.375 30 C -0.208 4.208 31 C -0.051 4.051 32 H 0.274 0.726 33 H 0.369 0.631 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.406 0.594 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.126 0.874 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 -29.208 -0.173 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.434 6.434 11 N -0.335 5.335 12 N -0.001 5.001 13 C -0.189 4.189 14 C -0.057 4.057 15 C -0.089 4.089 16 C -0.166 4.166 17 C 0.073 3.927 18 O -0.204 6.204 19 C -0.038 4.038 20 C 0.302 3.698 21 O -0.393 6.393 22 N -0.378 5.378 23 C -0.011 4.011 24 C 0.009 3.991 25 H 0.108 0.892 26 C -0.186 4.186 27 C -0.194 4.194 28 C -0.028 4.028 29 O -0.295 6.295 30 C -0.227 4.227 31 C -0.071 4.071 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.241 0.759 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.080 0.920 48 H 0.144 0.856 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.409 -29.142 -0.249 32.079 hybrid contribution 1.298 0.886 0.044 1.572 sum -12.111 -28.255 -0.205 30.742 Atomic orbital electron populations 1.70025 1.07367 1.27933 1.31845 1.25767 0.94672 1.00694 0.92403 0.86166 0.80469 0.80824 0.78496 1.18497 1.19837 1.19833 1.19784 0.94497 0.89626 1.53371 0.91047 1.16802 0.87861 0.80376 0.78354 1.90719 1.13428 1.85339 1.53907 1.48068 1.07401 1.01852 1.76138 1.74800 1.27876 0.92907 1.04477 1.23891 0.96579 0.90714 1.07691 1.18498 0.92771 0.91082 1.03372 1.20790 0.99743 0.90417 0.97901 1.19992 0.90496 0.99018 1.07061 1.19258 0.91859 0.83888 0.97705 1.86049 1.17143 1.28334 1.88897 1.22405 0.81661 0.95437 1.04266 1.20125 0.82331 0.90704 0.76594 1.90754 1.58884 1.42098 1.47577 1.45690 1.06275 1.09450 1.76362 1.21796 0.92136 0.84024 1.03134 1.23022 0.92663 0.95184 0.88216 0.89218 1.23133 0.97736 0.96249 1.01508 1.23298 0.98339 1.01005 0.96739 1.23423 0.94166 0.90593 0.94567 1.88473 1.69159 1.39151 1.32678 1.20946 1.00070 0.92034 1.09610 1.21127 0.93608 0.98166 0.94231 0.91535 0.79561 0.87657 0.85000 0.85128 0.88750 0.88692 0.75882 0.90810 0.90189 0.89846 0.89372 0.90126 0.89605 0.89436 0.91995 0.85575 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.71 11.71 55.56 0.65 -21.06 16 2 C 0.09 2.38 5.50 -17.34 -0.10 2.29 16 3 Si 0.92 19.28 29.56 -169.99 -5.02 14.26 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -14.81 9.26 -37.92 -0.35 -15.16 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.56 16.22 7.65 -15.34 -0.12 16.10 16 10 O -0.55 -18.46 15.20 4.94 0.08 -18.38 16 11 N -0.59 -14.11 6.26 28.92 0.18 -13.93 16 12 N -0.19 -4.28 10.19 32.13 0.33 -3.95 16 13 C 0.02 0.35 10.75 -14.60 -0.16 0.19 16 14 C -0.05 -0.85 5.88 -104.94 -0.62 -1.47 16 15 C -0.07 -0.85 9.76 -39.42 -0.38 -1.24 16 16 C -0.15 -1.85 9.93 -39.82 -0.40 -2.24 16 17 C 0.12 1.57 6.71 -38.87 -0.26 1.31 16 18 O -0.29 -3.80 9.66 -38.66 -0.37 -4.17 16 19 C 0.04 0.38 5.21 36.01 0.19 0.57 16 20 C 0.52 5.36 7.91 -10.99 -0.09 5.27 16 21 O -0.52 -7.64 16.50 -14.36 -0.24 -7.87 16 22 N -0.72 -5.14 5.53 -60.29 -0.33 -5.48 16 23 C 0.11 0.72 5.21 -4.04 -0.02 0.70 16 24 C 0.07 0.31 3.56 -26.01 -0.09 0.22 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 26 C -0.15 -0.44 6.56 -24.70 -0.16 -0.61 16 27 C -0.16 -0.44 7.16 -24.40 -0.17 -0.61 16 28 C 0.05 0.22 7.78 38.18 0.30 0.51 16 29 O -0.38 -2.49 10.99 -35.23 -0.39 -2.88 16 30 C -0.21 -2.72 8.97 -39.82 -0.36 -3.08 16 31 C -0.05 -0.80 9.54 -39.42 -0.38 -1.18 16 32 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 33 H 0.37 7.43 8.62 -182.59 -1.57 5.86 16 34 H 0.11 1.52 8.03 -52.49 -0.42 1.10 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.09 0.66 7.64 -51.93 -0.40 0.27 16 38 H 0.10 0.71 7.66 -51.93 -0.40 0.31 16 39 H 0.41 1.99 8.47 -40.82 -0.35 1.64 16 40 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.24 7.85 -51.93 -0.41 -0.17 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.13 1.30 6.27 -52.48 -0.33 0.97 16 49 H 0.14 2.47 7.55 -52.48 -0.40 2.07 16 LS Contribution 423.70 15.07 6.39 6.39 Total: -1.00 -39.68 423.70 -9.94 -49.62 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.04 Total: 5.87 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.16 Total: 1.59 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.83 Total: -44.41 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.92 Total: -33.31 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -39.68 -9.94 -49.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028214276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.790 kcal (2) G-P(sol) polarization free energy of solvation -39.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds