Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30602 * 1 3 3 Si 1.86806 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46822 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47096 * 300.00268 * 3 2 1 6 6 H 1.48501 * 109.46842 * 60.00557 * 3 2 1 7 7 C 1.40202 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.40682 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21981 * 119.99776 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00157 * 180.02562 * 9 7 2 12 12 N 1.40108 * 119.99946 * 179.97438 * 11 9 7 13 13 C 1.30700 * 119.99995 * 179.97438 * 12 11 9 14 14 C 1.46733 * 120.00029 * 180.02562 * 13 12 11 15 15 C 1.40257 * 120.12758 * 179.97438 * 14 13 12 16 16 C 1.36595 * 119.87190 * 179.97438 * 15 14 13 17 17 C 1.39202 * 120.12715 * 0.25983 * 16 15 14 18 18 O 1.35683 * 119.87263 * 179.74569 * 17 16 15 19 19 C 1.42898 * 116.99871 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47153 * 179.97438 * 19 18 17 21 21 O 1.21285 * 119.99415 * 359.97438 * 20 19 18 22 22 N 1.34769 * 120.00402 * 179.97438 * 20 19 18 23 23 C 1.46493 * 120.00262 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47385 * 180.02562 * 23 22 20 25 25 H 1.08997 * 109.82261 * 305.70330 * 24 23 22 26 26 C 1.54381 * 109.83218 * 184.81393 * 24 23 22 27 27 C 1.55454 * 102.18441 * 219.17963 * 26 24 23 28 28 C 1.54943 * 100.99021 * 34.04072 * 27 26 24 29 29 O 1.43236 * 109.82841 * 66.58489 * 24 23 22 30 30 C 1.39201 * 120.25054 * 359.48605 * 17 16 15 31 31 C 1.36582 * 120.13261 * 0.50971 * 30 17 16 32 32 H 0.97005 * 119.99822 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00121 * 0.02562 * 11 9 7 34 34 H 1.08000 * 119.99647 * 0.02562 * 13 12 11 35 35 H 1.07999 * 120.06395 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.93338 * 179.97438 * 16 15 14 37 37 H 1.08994 * 109.47453 * 299.99337 * 19 18 17 38 38 H 1.08999 * 109.47318 * 60.00096 * 19 18 17 39 39 H 0.97006 * 119.99540 * 0.02562 * 22 20 19 40 40 H 1.09007 * 109.47122 * 299.99974 * 23 22 20 41 41 H 1.08997 * 109.47711 * 59.99775 * 23 22 20 42 42 H 1.09004 * 110.84718 * 337.31934 * 26 24 23 43 43 H 1.09003 * 110.84882 * 100.93875 * 26 24 23 44 44 H 1.08997 * 111.06304 * 276.12126 * 27 26 24 45 45 H 1.09001 * 111.17863 * 152.00688 * 27 26 24 46 46 H 1.08997 * 110.31416 * 204.69042 * 28 27 26 47 47 H 1.09005 * 110.39757 * 82.56078 * 28 27 26 48 48 H 1.08008 * 119.93005 * 180.23544 * 30 17 16 49 49 H 1.08003 * 120.06937 * 179.71863 * 31 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7001 1.3463 -0.0006 5 1 1.8813 2.3965 -1.2124 6 1 1.8814 2.3964 1.2126 7 6 2.0070 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0010 9 6 1.3036 -2.4326 -0.0016 10 8 0.0838 -2.4325 -0.0016 11 7 1.9774 -3.5997 -0.0016 12 7 1.2768 -4.8131 -0.0022 13 6 1.9303 -5.9450 -0.0027 14 6 1.1966 -7.2157 -0.0038 15 6 1.8952 -8.4319 -0.0049 16 6 1.2069 -9.6118 -0.0054 17 6 -0.1851 -9.6087 -0.0103 18 8 -0.8636 -10.7837 -0.0161 19 6 -2.2906 -10.7088 -0.0203 20 6 -2.8667 -12.1014 -0.0270 21 8 -2.1278 -13.0632 -0.0285 22 7 -4.2027 -12.2780 -0.0314 23 6 -4.7627 -13.6317 -0.0373 24 6 -6.2906 -13.5516 -0.0420 25 1 -6.6311 -12.9372 0.7914 26 6 -6.8898 -14.9697 0.0736 27 6 -8.1038 -14.8928 -0.8943 28 6 -7.5516 -13.9418 -1.9858 29 8 -6.7438 -12.9877 -1.2782 30 6 -0.8837 -8.4047 -0.0040 31 6 -0.2060 -7.2188 -0.0034 32 1 -0.4850 0.8401 0.0004 33 1 2.9474 -3.5998 -0.0005 34 1 3.0103 -5.9449 -0.0023 35 1 2.9752 -8.4356 -0.0045 36 1 1.7438 -10.5489 -0.0067 37 1 -2.6293 -10.1795 0.8702 38 1 -2.6237 -10.1740 -0.9097 39 1 -4.7936 -11.5086 -0.0306 40 1 -4.4243 -14.1610 -0.9281 41 1 -4.4293 -14.1668 0.8518 42 1 -6.1746 -15.7214 -0.2604 43 1 -7.2173 -15.1705 1.0937 44 1 -8.9729 -14.4599 -0.3991 45 1 -8.3390 -15.8728 -1.3096 46 1 -8.3710 -13.4377 -2.4982 47 1 -6.9433 -14.4962 -2.7005 48 1 -1.9637 -8.4083 -0.0040 49 1 -0.7491 -6.2852 -0.0030 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028214276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -117.483201 kcal Electronic energy + Delta-G solvation = -31246.735435 eV Core-core repulsion = 26560.052774 eV Total energy + Delta-G solvation = -4686.682661 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.52323 -40.79110 -40.09101 -39.57789 -38.54307 -36.71210 -35.90007 -34.71331 -33.18585 -33.10824 -32.23710 -31.73953 -30.57345 -29.29999 -28.26192 -26.28164 -24.69640 -23.71227 -22.77058 -22.32707 -22.21267 -21.43500 -21.27183 -19.53823 -19.30213 -18.52293 -18.03993 -17.71420 -17.64294 -17.41122 -17.15216 -16.77771 -16.47716 -16.16470 -15.82088 -15.78384 -15.30602 -15.16943 -15.06654 -14.85441 -14.66760 -14.50993 -14.33184 -13.95568 -13.86027 -13.72751 -13.40088 -13.29218 -13.02591 -12.96050 -12.70261 -12.70159 -12.69190 -12.41208 -12.12057 -11.98901 -11.98403 -11.86021 -11.73479 -11.04713 -11.00942 -10.93999 -10.56907 -10.25196 -10.06824 -9.97425 -9.92188 -8.64007 -8.42194 -7.08668 -0.06215 0.47435 1.36957 1.39898 1.41079 1.48153 1.57916 1.59628 2.08448 2.37001 2.42769 2.57072 2.86690 2.94118 3.49532 3.55832 3.65700 3.68463 3.82276 3.85298 3.95319 3.96005 4.06162 4.06971 4.16727 4.18986 4.34228 4.39340 4.40593 4.56097 4.62489 4.65512 4.67067 4.81824 4.92469 4.94502 4.99924 5.04260 5.15957 5.20129 5.23882 5.26984 5.28960 5.44663 5.66765 5.70696 5.82417 6.01192 6.04005 6.26847 6.42578 6.68631 6.97122 7.06567 7.47214 8.42160 8.59908 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001191 C = 0.001107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.307202 B =23504.427176 C =25279.624817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.030 3.970 3 Si 1.010 2.990 4 H -0.243 1.243 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.617 6.617 11 N -0.596 5.596 12 N -0.267 5.267 13 C 0.071 3.929 14 C -0.093 4.093 15 C -0.042 4.042 16 C -0.154 4.154 17 C 0.130 3.870 18 O -0.308 6.308 19 C 0.034 3.966 20 C 0.517 3.483 21 O -0.569 6.569 22 N -0.708 5.708 23 C 0.111 3.889 24 C 0.070 3.930 25 H 0.102 0.898 26 C -0.147 4.147 27 C -0.150 4.150 28 C 0.040 3.960 29 O -0.398 6.398 30 C -0.209 4.209 31 C -0.063 4.063 32 H 0.281 0.719 33 H 0.384 0.616 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.419 0.581 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.151 0.849 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -30.568 0.147 32.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.188 4.188 3 Si 0.827 3.173 4 H -0.166 1.166 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.113 0.887 9 C 0.353 3.647 10 O -0.502 6.502 11 N -0.341 5.341 12 N -0.075 5.075 13 C -0.138 4.138 14 C -0.096 4.096 15 C -0.062 4.062 16 C -0.172 4.172 17 C 0.083 3.917 18 O -0.220 6.220 19 C -0.044 4.044 20 C 0.303 3.697 21 O -0.448 6.448 22 N -0.362 5.362 23 C -0.012 4.012 24 C 0.012 3.988 25 H 0.119 0.881 26 C -0.185 4.185 27 C -0.188 4.188 28 C -0.036 4.036 29 O -0.318 6.318 30 C -0.227 4.227 31 C -0.084 4.084 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.169 0.831 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.339 -30.543 0.070 32.941 hybrid contribution 0.893 0.851 -0.076 1.236 sum -11.446 -29.692 -0.006 31.822 Atomic orbital electron populations 1.70188 1.09976 1.29697 1.33021 1.27142 0.95533 1.05334 0.90796 0.84807 0.79342 0.74304 0.78810 1.16576 1.19017 1.18985 1.20339 0.95768 0.90045 1.53600 0.88699 1.17195 0.87404 0.82259 0.77822 1.90651 1.15818 1.86829 1.56915 1.47284 1.07712 1.01842 1.77261 1.74906 1.28884 0.93312 1.10379 1.24595 0.98542 0.90083 1.00608 1.18636 0.92838 0.91311 1.06789 1.21079 1.01364 0.88839 0.94935 1.20347 0.90505 0.99908 1.06439 1.19448 0.92409 0.83845 0.95987 1.86040 1.19184 1.28249 1.88566 1.22708 0.79880 0.95269 1.06546 1.20360 0.82917 0.90546 0.75883 1.90732 1.60155 1.43545 1.50364 1.45650 1.05503 1.10457 1.74551 1.21885 0.93465 0.83392 1.02496 1.23080 0.91214 0.96532 0.87983 0.88054 1.23165 0.97715 0.95069 1.02502 1.23288 0.98238 1.01208 0.96032 1.23571 0.94173 0.90806 0.95069 1.88441 1.69604 1.40290 1.33506 1.21080 1.01401 0.91078 1.09156 1.21038 0.94184 0.97956 0.95222 0.90847 0.77834 0.84140 0.81461 0.83012 0.86127 0.86555 0.74406 0.92376 0.89931 0.89857 0.87858 0.89615 0.88379 0.88943 0.92271 0.83147 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.61 11.71 21.86 0.26 -48.36 16 2 C 0.03 1.67 5.50 85.35 0.47 2.14 16 3 Si 1.01 39.51 29.56 68.60 2.03 41.54 16 4 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.56 -31.76 9.26 23.34 0.22 -31.54 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 9 C 0.54 33.16 7.65 84.84 0.65 33.81 16 10 O -0.62 -43.71 15.20 -5.25 -0.08 -43.79 16 11 N -0.60 -29.55 6.26 -180.51 -1.13 -30.68 16 12 N -0.27 -12.42 10.19 -52.26 -0.53 -12.95 16 13 C 0.07 2.42 10.75 87.08 0.94 3.35 16 14 C -0.09 -2.77 5.88 -20.07 -0.12 -2.89 16 15 C -0.04 -0.92 9.76 22.38 0.22 -0.70 16 16 C -0.15 -3.38 9.93 22.12 0.22 -3.16 16 17 C 0.13 3.12 6.71 22.73 0.15 3.28 16 18 O -0.31 -7.40 9.66 -70.97 -0.69 -8.09 16 19 C 0.03 0.56 5.21 71.24 0.37 0.93 16 20 C 0.52 10.19 7.91 87.66 0.69 10.89 16 21 O -0.57 -16.69 16.50 15.99 0.26 -16.42 16 22 N -0.71 -9.28 5.53 -463.07 -2.56 -11.84 16 23 C 0.11 1.35 5.21 86.38 0.45 1.80 16 24 C 0.07 0.57 3.56 31.06 0.11 0.68 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 C -0.15 -0.65 6.56 31.91 0.21 -0.44 16 27 C -0.15 -0.60 7.16 32.10 0.23 -0.37 16 28 C 0.04 0.32 7.78 72.65 0.57 0.89 16 29 O -0.40 -4.96 10.99 -148.98 -1.64 -6.60 16 30 C -0.21 -5.18 8.97 22.11 0.20 -4.98 16 31 C -0.06 -2.00 9.54 22.38 0.21 -1.79 16 32 H 0.28 15.18 8.29 -92.70 -0.77 14.41 16 33 H 0.38 15.69 8.62 -213.31 -1.84 13.85 16 34 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16 35 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.12 1.38 7.64 -2.39 -0.02 1.36 16 38 H 0.12 1.45 7.66 -2.39 -0.02 1.43 16 39 H 0.42 3.41 8.47 -92.70 -0.79 2.63 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.38 7.85 -2.38 -0.02 0.36 16 43 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 48 H 0.15 2.84 6.27 -2.91 -0.02 2.82 16 49 H 0.11 4.13 7.55 -2.91 -0.02 4.11 16 Total: -1.00 -93.41 423.70 0.09 -93.32 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -1.62 Total: 31.97 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.78 Total: 11.90 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.97 Total: -103.83 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -2.14 Total: -74.90 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -93.41 0.09 -93.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028214276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.162 kcal (2) G-P(sol) polarization free energy of solvation -93.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds