Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47034 * 299.99916 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99914 * 3 2 1 7 7 C 1.40203 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.40685 * 120.00068 * 359.97438 * 7 2 1 10 10 O 1.21977 * 119.99871 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99914 * 180.02562 * 9 7 2 12 12 N 1.40095 * 119.99994 * 180.02562 * 11 9 7 13 13 C 1.30700 * 119.99800 * 179.97438 * 12 11 9 14 14 C 1.46746 * 119.99806 * 180.02562 * 13 12 11 15 15 C 1.40263 * 120.12485 * 359.72317 * 14 13 12 16 16 C 1.36592 * 119.86880 * 179.73932 * 15 14 13 17 17 C 1.39203 * 120.12759 * 0.53899 * 16 15 14 18 18 O 1.35685 * 119.87316 * 179.73773 * 17 16 15 19 19 C 1.42900 * 116.99766 * 359.97438 * 18 17 16 20 20 C 1.50707 * 109.46793 * 179.97438 * 19 18 17 21 21 O 1.21280 * 119.99791 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99753 * 180.02562 * 20 19 18 23 23 C 1.46507 * 119.99995 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.46975 * 179.97438 * 23 22 20 25 25 H 1.08999 * 110.27149 * 60.64187 * 24 23 22 26 26 C 1.54946 * 110.30615 * 182.83148 * 24 23 22 27 27 C 1.55309 * 100.94201 * 155.36268 * 26 24 23 28 28 C 1.54382 * 102.25091 * 325.86814 * 27 26 24 29 29 O 1.43242 * 107.58935 * 21.35530 * 28 27 26 30 30 C 1.39205 * 120.25132 * 359.71556 * 17 16 15 31 31 C 1.36584 * 120.13053 * 0.02562 * 30 17 16 32 32 H 0.96996 * 119.99657 * 0.02562 * 1 2 3 33 33 H 0.97004 * 119.99532 * 359.97438 * 11 9 7 34 34 H 1.07999 * 120.00236 * 359.97438 * 13 12 11 35 35 H 1.08000 * 120.06320 * 359.97438 * 15 14 13 36 36 H 1.07994 * 119.93462 * 180.23737 * 16 15 14 37 37 H 1.09000 * 109.47064 * 299.99669 * 19 18 17 38 38 H 1.09001 * 109.47431 * 60.00194 * 19 18 17 39 39 H 0.96999 * 120.00219 * 359.97438 * 22 20 19 40 40 H 1.08992 * 109.47148 * 300.00040 * 23 22 20 41 41 H 1.09001 * 109.46777 * 59.99841 * 23 22 20 42 42 H 1.08993 * 111.13081 * 273.28190 * 26 24 23 43 43 H 1.08999 * 111.12381 * 37.44518 * 26 24 23 44 44 H 1.08998 * 110.84717 * 207.67896 * 27 26 24 45 45 H 1.09000 * 110.84814 * 84.05436 * 27 26 24 46 46 H 1.09004 * 109.83435 * 261.84304 * 28 27 26 47 47 H 1.09003 * 109.83232 * 140.86773 * 28 27 26 48 48 H 1.08001 * 119.93165 * 179.97438 * 30 17 16 49 49 H 1.08005 * 120.06445 * 179.97438 * 31 30 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.7001 1.3464 0.0006 5 1 1.8813 2.3965 -1.2126 6 1 1.8813 2.3964 1.2125 7 6 2.0071 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0001 9 6 1.3036 -2.4326 -0.0005 10 8 0.0838 -2.4325 -0.0005 11 7 1.9775 -3.5998 -0.0005 12 7 1.2770 -4.8130 -0.0011 13 6 1.9305 -5.9449 -0.0016 14 6 1.1967 -7.2158 -0.0027 15 6 -0.2059 -7.2188 0.0026 16 6 -0.8836 -8.4047 -0.0039 17 6 -0.1849 -9.6087 -0.0044 18 8 -0.8634 -10.7838 -0.0055 19 6 -2.2904 -10.7089 -0.0054 20 6 -2.8665 -12.1015 -0.0073 21 8 -2.1276 -13.0633 -0.0081 22 7 -4.2025 -12.2780 -0.0081 23 6 -4.7626 -13.6319 -0.0094 24 6 -6.2905 -13.5517 -0.0095 25 1 -6.6412 -13.0305 -0.9002 26 6 -6.9035 -14.9730 0.0610 27 6 -8.2915 -14.6647 0.6859 28 6 -7.9708 -13.4873 1.6315 29 8 -6.7548 -12.8838 1.1744 30 6 1.2071 -9.6118 -0.0043 31 6 1.8953 -8.4320 -0.0032 32 1 -0.4849 0.8400 -0.0004 33 1 2.9475 -3.5997 -0.0009 34 1 3.0105 -5.9449 -0.0020 35 1 -0.7489 -6.2853 0.0079 36 1 -1.9635 -8.4083 -0.0037 37 1 -2.6263 -10.1776 0.8851 38 1 -2.6264 -10.1760 -0.8949 39 1 -4.7934 -11.5088 -0.0071 40 1 -4.4262 -14.1633 -0.8995 41 1 -4.4271 -14.1646 0.8804 42 1 -7.0080 -15.4055 -0.9340 43 1 -6.3160 -15.6224 0.7099 44 1 -8.6636 -15.5222 1.2465 45 1 -9.0041 -14.3627 -0.0816 46 1 -7.8411 -13.8551 2.6494 47 1 -8.7799 -12.7575 1.6011 48 1 1.7439 -10.5489 -0.0043 49 1 2.9754 -8.4356 -0.0027 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028214279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -87.258326 kcal Electronic energy + Delta-G solvation = -31231.885068 eV Core-core repulsion = 26546.513056 eV Total energy + Delta-G solvation = -4685.372012 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.65366 -40.12239 -39.32821 -37.80709 -37.26369 -35.22818 -34.99367 -32.82320 -32.67111 -31.66371 -31.18462 -31.03754 -29.38068 -28.23725 -26.45940 -25.69489 -23.38022 -22.72321 -22.30670 -21.87648 -20.88035 -20.51151 -19.64810 -18.43128 -17.81104 -17.61109 -17.53039 -16.60665 -16.45101 -16.27605 -16.10871 -15.64721 -15.47120 -15.25427 -15.02467 -14.75350 -14.28109 -14.06344 -13.92814 -13.80699 -13.37572 -13.31017 -13.26792 -13.07326 -12.76813 -12.66094 -12.56493 -12.41274 -11.97713 -11.90778 -11.81184 -11.61281 -11.49071 -11.39684 -11.18727 -10.80840 -10.66276 -10.63993 -10.34948 -10.16583 -10.13498 -9.55178 -9.48591 -9.05078 -8.99270 -8.43061 -7.77115 -7.12563 -6.40976 -4.95881 1.14313 1.54516 2.20511 2.24242 2.87148 3.04448 3.08788 3.10578 3.15656 3.45009 3.73070 3.79682 4.05322 4.07236 4.09470 4.23337 4.28205 4.44340 4.47415 4.51638 4.65497 4.70052 4.75510 4.90512 4.96548 4.96945 5.04395 5.10378 5.16397 5.17887 5.26608 5.36049 5.41861 5.48565 5.49235 5.73943 5.75782 5.88169 5.89966 6.15634 6.35544 6.37862 6.43267 6.65019 6.75696 6.90246 7.01053 7.20131 7.35226 7.79460 7.83477 7.98636 8.68494 8.75847 9.29431 10.38148 10.63888 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.001200 C = 0.001109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.253784 B =23323.399494 C =25234.044512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.558 3.442 10 O -0.554 6.554 11 N -0.589 5.589 12 N -0.191 5.191 13 C 0.020 3.980 14 C -0.055 4.055 15 C -0.051 4.051 16 C -0.208 4.208 17 C 0.119 3.881 18 O -0.292 6.292 19 C 0.041 3.959 20 C 0.518 3.482 21 O -0.518 6.518 22 N -0.724 5.724 23 C 0.125 3.875 24 C 0.067 3.933 25 H 0.081 0.919 26 C -0.149 4.149 27 C -0.156 4.156 28 C 0.050 3.950 29 O -0.377 6.377 30 C -0.147 4.147 31 C -0.068 4.068 32 H 0.274 0.726 33 H 0.369 0.631 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.407 0.593 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.131 0.869 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -28.880 -0.204 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.434 6.434 11 N -0.335 5.335 12 N -0.001 5.001 13 C -0.189 4.189 14 C -0.057 4.057 15 C -0.071 4.071 16 C -0.227 4.227 17 C 0.073 3.927 18 O -0.204 6.204 19 C -0.038 4.038 20 C 0.303 3.697 21 O -0.393 6.393 22 N -0.378 5.378 23 C 0.001 3.999 24 C 0.009 3.991 25 H 0.099 0.901 26 C -0.187 4.187 27 C -0.193 4.193 28 C -0.026 4.026 29 O -0.297 6.297 30 C -0.166 4.166 31 C -0.088 4.088 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.242 0.758 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.149 0.851 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.637 -28.845 -0.101 31.906 hybrid contribution 1.157 0.943 -0.062 1.493 sum -12.480 -27.902 -0.163 30.567 Atomic orbital electron populations 1.70026 1.07364 1.27933 1.31854 1.25769 0.94674 1.00695 0.92403 0.86166 0.80468 0.80822 0.78494 1.18496 1.19832 1.19839 1.19785 0.94497 0.89626 1.53367 0.91046 1.16803 0.87859 0.80376 0.78352 1.90718 1.13430 1.85338 1.53901 1.48067 1.07402 1.01855 1.76137 1.74797 1.27877 0.92906 1.04484 1.23894 0.96577 0.90714 1.07690 1.18500 0.92771 0.91081 1.03379 1.21128 0.93608 0.98165 0.94233 1.20947 1.00070 0.92035 1.09612 1.19259 0.91859 0.83886 0.97699 1.86049 1.17141 1.28330 1.88897 1.22405 0.81657 0.95429 1.04275 1.20117 0.82301 0.90713 0.76585 1.90754 1.58871 1.42084 1.47570 1.45676 1.06293 1.09457 1.76390 1.21540 0.90818 0.84143 1.03354 1.23264 0.93317 0.93082 0.89427 0.90137 1.23246 0.96088 0.96494 1.02840 1.23129 0.97589 0.99099 0.99526 1.23150 0.86903 0.94554 0.98017 1.88449 1.40661 1.57311 1.43277 1.19989 0.90495 0.99019 1.07058 1.20788 0.99743 0.90418 0.97899 0.91538 0.79561 0.87657 0.84223 0.85576 0.88673 0.88757 0.75805 0.89887 0.90580 0.89318 0.89713 0.89694 0.90288 0.91094 0.91127 0.85124 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.71 11.71 55.56 0.65 -21.06 16 2 C 0.09 2.38 5.50 -17.33 -0.10 2.29 16 3 Si 0.92 19.28 29.56 -169.99 -5.02 14.26 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -14.81 9.26 -37.92 -0.35 -15.16 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.22 7.65 -15.34 -0.12 16.10 16 10 O -0.55 -18.46 15.20 4.94 0.08 -18.38 16 11 N -0.59 -14.11 6.26 28.92 0.18 -13.93 16 12 N -0.19 -4.28 10.19 32.13 0.33 -3.95 16 13 C 0.02 0.35 10.75 -14.60 -0.16 0.19 16 14 C -0.05 -0.85 5.88 -104.94 -0.62 -1.47 16 15 C -0.05 -0.80 9.54 -39.42 -0.38 -1.18 16 16 C -0.21 -2.72 8.97 -39.82 -0.36 -3.08 16 17 C 0.12 1.57 6.71 -38.86 -0.26 1.31 16 18 O -0.29 -3.79 9.66 -38.67 -0.37 -4.17 16 19 C 0.04 0.38 5.21 36.01 0.19 0.57 16 20 C 0.52 5.34 7.91 -10.99 -0.09 5.25 16 21 O -0.52 -7.59 16.50 -14.35 -0.24 -7.82 16 22 N -0.72 -5.15 5.48 -60.29 -0.33 -5.48 16 23 C 0.13 0.79 5.40 -4.04 -0.02 0.77 16 24 C 0.07 0.31 3.51 -25.70 -0.09 0.22 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 C -0.15 -0.46 6.57 -24.48 -0.16 -0.62 16 27 C -0.16 -0.43 7.02 -24.78 -0.17 -0.61 16 28 C 0.05 0.23 7.79 37.88 0.30 0.52 16 29 O -0.38 -2.52 10.89 -35.23 -0.38 -2.90 16 30 C -0.15 -1.84 9.93 -39.82 -0.40 -2.24 16 31 C -0.07 -0.85 9.76 -39.42 -0.38 -1.24 16 32 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 33 H 0.37 7.43 8.62 -182.60 -1.57 5.86 16 34 H 0.11 1.52 8.03 -52.49 -0.42 1.10 16 35 H 0.14 2.47 7.55 -52.49 -0.40 2.07 16 36 H 0.13 1.30 6.27 -52.49 -0.33 0.97 16 37 H 0.10 0.71 7.65 -51.93 -0.40 0.31 16 38 H 0.09 0.66 7.65 -51.93 -0.40 0.27 16 39 H 0.41 2.04 8.41 -40.82 -0.34 1.69 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.08 0.27 8.06 -51.93 -0.42 -0.15 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 423.74 15.07 6.39 6.39 Total: -1.00 -39.58 423.74 -9.94 -49.52 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.05 Total: 5.89 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.16 Total: 1.64 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.83 Total: -44.41 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.92 Total: -33.28 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -39.58 -9.94 -49.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028214279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.734 kcal (2) G-P(sol) polarization free energy of solvation -39.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds