Wall clock time and date at job start Tue Mar 31 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34158 * 125.42545 * 2 1 4 4 C 1.47059 * 105.94887 * 180.02562 * 3 2 1 5 5 C 1.47234 * 127.20478 * 180.02562 * 4 3 2 6 6 O 1.21527 * 120.00138 * 180.02562 * 5 4 3 7 7 O 1.34772 * 119.99294 * 0.02562 * 5 4 3 8 8 C 1.45202 * 116.99711 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47462 * 179.97438 * 8 7 5 10 10 O 1.21298 * 120.00080 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00671 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99508 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.46995 * 269.99871 * 12 11 9 14 14 H 1.07999 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99658 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47339 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46853 * 299.99789 * 17 15 13 21 21 C 1.40041 * 120.00491 * 180.02562 * 11 9 8 22 22 C 1.38818 * 120.07555 * 269.99866 * 21 11 9 23 23 C 1.38145 * 119.95024 * 179.97438 * 22 21 11 24 24 C 1.38278 * 120.11599 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.15499 * 359.97438 * 24 23 22 26 26 C 1.38316 * 120.04504 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.05374 * 180.02562 * 26 25 24 28 28 C 1.36499 * 105.59668 * 0.26138 * 4 3 2 29 29 C 1.50704 * 125.80926 * 179.74027 * 28 4 3 30 30 O 1.33629 * 108.38499 * 359.57466 * 28 4 3 31 31 H 1.08992 * 109.47643 * 90.00065 * 1 2 3 32 32 H 1.09010 * 109.47020 * 209.99980 * 1 2 3 33 33 H 1.08999 * 109.47544 * 329.99207 * 1 2 3 34 34 H 1.07999 * 127.02489 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.47228 * 59.99337 * 8 7 5 36 36 H 1.08996 * 109.47062 * 300.00018 * 8 7 5 37 37 H 1.09002 * 109.46868 * 30.00141 * 12 11 9 38 38 H 1.09002 * 109.46706 * 149.99833 * 12 11 9 39 39 H 0.96996 * 120.00287 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.02345 * 0.25605 * 22 21 11 41 41 H 1.07997 * 119.93787 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92497 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.97649 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.46810 * 89.99866 * 29 28 4 45 45 H 1.08998 * 109.47004 * 210.00438 * 29 28 4 46 46 H 1.09006 * 109.46673 * 329.99958 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2846 1.0932 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9014 1.4116 -0.0003 6 8 5.9872 0.8660 -0.0014 7 8 4.8232 2.7571 0.0011 8 6 6.0766 3.4902 0.0007 9 6 5.7930 4.9702 0.0019 10 8 4.6471 5.3681 0.0024 11 7 6.8124 5.8518 0.0023 12 6 8.1964 5.3712 0.0021 13 6 8.6708 5.2059 1.4230 14 1 8.0077 5.4354 2.2439 15 6 9.9512 4.7606 1.6747 16 7 10.7586 4.4806 0.6751 17 14 10.5390 4.5550 3.4359 18 1 9.6733 3.5719 4.1352 19 1 11.9419 4.0680 3.4357 20 1 10.4695 5.8625 4.1367 21 6 6.5487 7.2272 0.0039 22 6 6.4172 7.9117 -1.1966 23 6 6.1566 9.2683 -1.1920 24 6 6.0271 9.9459 0.0064 25 6 6.1573 9.2686 1.2048 26 6 6.4171 7.9101 1.2078 27 9 6.5438 7.2480 2.3787 28 6 3.5787 -0.7590 -0.0069 29 6 4.7384 -1.7214 -0.0155 30 8 2.2850 -1.0937 -0.0006 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.9590 2.1229 0.0004 35 1 6.6489 3.2309 -0.8900 36 1 6.6504 3.2292 0.8899 37 1 8.2476 4.4114 -0.5121 38 1 8.8315 6.0930 -0.5114 39 1 11.6592 4.1670 0.8523 40 1 6.5139 7.3832 -2.1334 41 1 6.0547 9.8007 -2.1261 42 1 5.8238 11.0065 0.0064 43 1 6.0552 9.8006 2.1392 44 1 5.0214 -1.9583 1.0100 45 1 4.4479 -2.6357 -0.5329 46 1 5.5846 -1.2659 -0.5301 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028430554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:23 Heat of formation + Delta-G solvation = -117.396292 kcal Electronic energy + Delta-G solvation = -33960.990063 eV Core-core repulsion = 29118.558115 eV Total energy + Delta-G solvation = -4842.431948 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.28615 -42.78068 -40.22212 -39.52099 -37.99521 -36.13468 -35.14872 -33.36801 -33.10329 -32.70834 -30.56570 -30.12881 -29.72471 -28.09221 -27.05692 -25.48774 -23.66898 -23.15699 -22.55489 -22.26145 -21.40556 -19.53325 -19.21940 -17.71747 -17.22896 -16.97208 -16.74165 -16.53048 -16.35644 -16.12706 -15.98624 -15.74258 -15.42492 -14.80607 -14.63236 -14.44325 -14.22618 -13.95781 -13.74163 -13.68520 -13.56822 -13.09680 -13.05047 -12.93355 -12.83560 -12.59192 -12.51491 -12.37139 -12.15647 -11.95714 -11.80397 -11.73191 -11.53423 -11.26011 -10.93309 -10.80410 -10.42476 -10.40315 -10.25061 -9.91988 -9.83230 -9.36261 -8.70818 -8.58872 -8.58117 -8.28226 -8.14838 -6.22132 -4.29445 1.10502 1.41411 1.48970 1.84342 2.39271 2.68797 3.03443 3.12862 3.26577 3.30307 3.34943 3.72737 3.85231 4.26651 4.33045 4.59637 4.63802 4.86134 4.99454 5.02237 5.06907 5.11744 5.13187 5.13759 5.18502 5.30217 5.34247 5.43335 5.49602 5.51339 5.57860 5.60214 5.73033 5.79267 5.82727 5.97261 6.21640 6.24775 6.34634 6.53499 6.55532 6.57596 6.63492 6.88122 6.95290 7.08489 7.44584 7.73761 7.90528 7.94436 7.99522 8.64501 8.82269 9.39235 10.85431 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.002922 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.161517 B = 9580.527778 C =11980.126573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 C -0.160 4.160 4 C -0.224 4.224 5 C 0.538 3.462 6 O -0.504 6.504 7 O -0.329 6.329 8 C 0.060 3.940 9 C 0.528 3.472 10 O -0.539 6.539 11 N -0.557 5.557 12 C 0.236 3.764 13 C -0.547 4.547 14 H 0.070 0.930 15 C 0.070 3.930 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.133 3.867 22 C -0.087 4.087 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.158 4.158 26 C 0.120 3.880 27 F -0.124 7.124 28 C 0.087 3.913 29 C -0.086 4.086 30 O -0.172 6.172 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -3.124 -4.277 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.179 4.179 4 C -0.227 4.227 5 C 0.383 3.617 6 O -0.394 6.394 7 O -0.244 6.244 8 C -0.017 4.017 9 C 0.316 3.684 10 O -0.416 6.416 11 N -0.288 5.288 12 C 0.118 3.882 13 C -0.585 4.585 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.527 5.527 17 Si 0.725 3.275 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.041 3.959 22 C -0.106 4.106 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.177 4.177 26 C 0.099 3.901 27 F -0.102 7.102 28 C 0.034 3.966 29 C -0.141 4.141 30 O -0.069 6.069 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.182 0.818 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.017 -3.457 -4.281 15.993 hybrid contribution 0.930 0.018 1.238 1.548 sum -14.087 -3.439 -3.043 14.817 Atomic orbital electron populations 1.20320 0.84491 1.04237 1.03672 1.22261 0.94063 0.83459 1.07469 1.22731 0.90090 1.00072 1.04969 1.20163 0.92532 0.92127 1.17849 1.19882 0.87844 0.81019 0.72933 1.90858 1.29248 1.72846 1.46486 1.86522 1.35563 1.18590 1.83774 1.22781 0.83544 0.88893 1.06451 1.19918 0.84754 0.87360 0.76361 1.90671 1.20867 1.80225 1.49850 1.45711 1.09327 1.01769 1.71988 1.19702 0.73993 0.95965 0.98539 1.21521 0.98796 1.46177 0.92046 0.91190 1.24906 0.96261 0.94611 0.97644 1.69900 1.07684 1.44153 1.30994 0.86548 0.77748 0.78836 0.84412 1.19922 1.21056 1.19990 1.17521 1.01814 0.84739 0.91789 1.21223 0.97931 0.94436 0.97017 1.20978 1.01872 0.93818 0.98277 1.20922 0.99234 0.99792 0.91543 1.21038 1.04508 0.92268 0.99880 1.18043 1.00196 0.90429 0.81463 1.91523 1.92760 1.80856 1.45063 1.22778 0.83243 0.93509 0.97021 1.20689 0.91954 0.96718 1.04785 1.83704 1.15814 1.35676 1.71669 0.89985 0.90503 0.89024 0.81757 0.87942 0.86349 0.93725 0.93908 0.92328 0.85170 0.85396 0.85303 0.84859 0.88925 0.90088 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.40 36.00 0.37 -0.10 16 2 C -0.02 -0.28 7.28 -35.75 -0.26 -0.54 16 3 C -0.16 -2.11 10.93 -37.44 -0.41 -2.52 16 4 C -0.22 -3.41 6.32 -103.29 -0.65 -4.06 16 5 C 0.54 9.63 7.95 34.39 0.27 9.91 16 6 O -0.50 -9.65 14.64 -19.29 -0.28 -9.93 16 7 O -0.33 -6.40 9.67 -47.37 -0.46 -6.85 16 8 C 0.06 1.20 4.51 36.00 0.16 1.36 16 9 C 0.53 11.54 7.72 -10.99 -0.08 11.45 16 10 O -0.54 -12.72 16.48 -14.12 -0.23 -12.95 16 11 N -0.56 -12.15 2.33 -114.66 -0.27 -12.41 16 12 C 0.24 5.61 4.96 -5.19 -0.03 5.58 16 13 C -0.55 -14.41 9.24 -34.44 -0.32 -14.72 16 14 H 0.07 1.90 6.42 -52.49 -0.34 1.56 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.13 2.68 4.47 -83.59 -0.37 2.31 16 22 C -0.09 -1.44 9.97 -39.40 -0.39 -1.83 16 23 C -0.13 -1.76 10.04 -39.60 -0.40 -2.15 16 24 C -0.10 -1.26 10.04 -39.56 -0.40 -1.65 16 25 C -0.16 -2.45 10.02 -39.54 -0.40 -2.84 16 26 C 0.12 2.37 7.31 -39.25 -0.29 2.08 16 27 F -0.12 -2.74 15.67 2.25 0.04 -2.71 16 28 C 0.09 1.13 7.38 -34.93 -0.26 0.87 16 29 C -0.09 -0.88 9.89 36.01 0.36 -0.52 16 30 O -0.17 -2.07 10.52 7.70 0.08 -1.99 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.10 1.92 7.40 -51.93 -0.38 1.54 16 36 H 0.12 2.52 8.00 -51.93 -0.42 2.10 16 37 H 0.04 1.07 6.44 -51.93 -0.33 0.73 16 38 H 0.04 1.06 8.05 -51.93 -0.42 0.65 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.11 1.30 6.49 -51.93 -0.34 0.96 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -33.13 409.43 -8.01 -41.14 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.59 Total: 2.85 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.18 Total: 4.38 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.47 Total: -36.24 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.89 Total: -31.72 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.13 -8.01 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028430554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.252 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds