Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34158 * 125.42545 * 2 1 4 4 C 1.47059 * 105.94887 * 180.02562 * 3 2 1 5 5 C 1.47234 * 127.20478 * 180.02562 * 4 3 2 6 6 O 1.21527 * 120.00138 * 180.02562 * 5 4 3 7 7 O 1.34772 * 119.99294 * 0.02562 * 5 4 3 8 8 C 1.45202 * 116.99711 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47462 * 179.97438 * 8 7 5 10 10 O 1.21298 * 120.00080 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00671 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99508 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.46995 * 269.99871 * 12 11 9 14 14 H 1.07999 * 120.00036 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99658 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47339 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.46791 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46853 * 299.99789 * 17 15 13 21 21 C 1.40041 * 120.00491 * 180.02562 * 11 9 8 22 22 C 1.38818 * 120.07555 * 269.99866 * 21 11 9 23 23 C 1.38145 * 119.95024 * 179.97438 * 22 21 11 24 24 C 1.38278 * 120.11599 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.15499 * 359.97438 * 24 23 22 26 26 C 1.38316 * 120.04504 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.05374 * 180.02562 * 26 25 24 28 28 C 1.36499 * 105.59668 * 0.26138 * 4 3 2 29 29 C 1.50704 * 125.80926 * 179.74027 * 28 4 3 30 30 O 1.33629 * 108.38499 * 359.57466 * 28 4 3 31 31 H 1.08992 * 109.47643 * 90.00065 * 1 2 3 32 32 H 1.09010 * 109.47020 * 209.99980 * 1 2 3 33 33 H 1.08999 * 109.47544 * 329.99207 * 1 2 3 34 34 H 1.07999 * 127.02489 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.47228 * 59.99337 * 8 7 5 36 36 H 1.08996 * 109.47062 * 300.00018 * 8 7 5 37 37 H 1.09002 * 109.46868 * 30.00141 * 12 11 9 38 38 H 1.09002 * 109.46706 * 149.99833 * 12 11 9 39 39 H 0.96996 * 120.00287 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.02345 * 0.25605 * 22 21 11 41 41 H 1.07997 * 119.93787 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92497 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.97649 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.46810 * 89.99866 * 29 28 4 45 45 H 1.08998 * 109.47004 * 210.00438 * 29 28 4 46 46 H 1.09006 * 109.46673 * 329.99958 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2846 1.0932 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9014 1.4116 -0.0003 6 8 5.9872 0.8660 -0.0014 7 8 4.8232 2.7571 0.0011 8 6 6.0766 3.4902 0.0007 9 6 5.7930 4.9702 0.0019 10 8 4.6471 5.3681 0.0024 11 7 6.8124 5.8518 0.0023 12 6 8.1964 5.3712 0.0021 13 6 8.6708 5.2059 1.4230 14 1 8.0077 5.4354 2.2439 15 6 9.9512 4.7606 1.6747 16 7 10.7586 4.4806 0.6751 17 14 10.5390 4.5550 3.4359 18 1 9.6733 3.5719 4.1352 19 1 11.9419 4.0680 3.4357 20 1 10.4695 5.8625 4.1367 21 6 6.5487 7.2272 0.0039 22 6 6.4172 7.9117 -1.1966 23 6 6.1566 9.2683 -1.1920 24 6 6.0271 9.9459 0.0064 25 6 6.1573 9.2686 1.2048 26 6 6.4171 7.9101 1.2078 27 9 6.5438 7.2480 2.3787 28 6 3.5787 -0.7590 -0.0069 29 6 4.7384 -1.7214 -0.0155 30 8 2.2850 -1.0937 -0.0006 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.9590 2.1229 0.0004 35 1 6.6489 3.2309 -0.8900 36 1 6.6504 3.2292 0.8899 37 1 8.2476 4.4114 -0.5121 38 1 8.8315 6.0930 -0.5114 39 1 11.6592 4.1670 0.8523 40 1 6.5139 7.3832 -2.1334 41 1 6.0547 9.8007 -2.1261 42 1 5.8238 11.0065 0.0064 43 1 6.0552 9.8006 2.1392 44 1 5.0214 -1.9583 1.0100 45 1 4.4479 -2.6357 -0.5329 46 1 5.5846 -1.2659 -0.5301 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028430554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -133.970400 kcal Electronic energy + Delta-G solvation = -33961.708770 eV Core-core repulsion = 29118.558115 eV Total energy + Delta-G solvation = -4843.150656 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.136 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.83284 -43.77925 -41.78993 -41.01996 -39.39176 -37.63620 -36.90376 -34.69931 -34.35794 -34.01537 -31.95081 -31.42935 -30.58092 -29.71946 -28.82689 -26.50110 -25.10575 -24.79926 -23.87582 -23.55967 -22.54353 -20.93831 -20.61011 -19.07476 -18.88446 -18.61882 -18.05945 -17.93912 -17.88734 -17.46467 -17.37975 -17.21931 -16.71641 -16.45480 -16.23214 -15.87950 -15.79967 -15.17451 -14.90706 -14.65817 -14.51639 -14.48177 -14.28030 -14.18599 -13.95777 -13.91556 -13.83125 -13.58469 -13.51013 -13.30887 -13.28202 -13.01821 -12.87042 -12.71872 -12.58736 -12.34872 -12.16285 -12.02488 -11.82729 -11.78801 -11.12824 -11.01108 -10.66759 -9.96923 -9.92553 -9.61125 -9.52675 -8.29402 -6.42427 -0.05310 0.13165 0.24040 0.84876 1.03693 1.29047 1.36361 1.37040 1.45650 1.62238 1.83514 2.17002 2.36095 2.61868 3.02308 3.30522 3.35596 3.39918 3.54108 3.67764 3.83180 3.88981 4.05668 4.09076 4.16838 4.35274 4.36905 4.38770 4.40075 4.51523 4.54703 4.58512 4.73061 4.82602 4.83413 4.97198 4.99538 5.03660 5.06929 5.18703 5.21630 5.32452 5.34364 5.39652 5.53790 5.67050 5.89913 5.91744 5.97529 6.17975 6.49484 6.67057 6.97528 7.29085 8.77483 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.002922 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.161517 B = 9580.527778 C =11980.126573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.007 4.007 3 C -0.188 4.188 4 C -0.262 4.262 5 C 0.535 3.465 6 O -0.525 6.525 7 O -0.338 6.338 8 C 0.068 3.932 9 C 0.526 3.474 10 O -0.560 6.560 11 N -0.553 5.553 12 C 0.252 3.748 13 C -0.555 4.555 14 H 0.055 0.945 15 C 0.028 3.972 16 N -0.914 5.914 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.086 3.914 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.079 4.079 25 C -0.155 4.155 26 C 0.073 3.927 27 F -0.151 7.151 28 C 0.100 3.900 29 C -0.086 4.086 30 O -0.167 6.167 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.270 0.730 40 H 0.137 0.863 41 H 0.173 0.827 42 H 0.180 0.820 43 H 0.157 0.843 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -2.234 -4.741 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 C -0.206 4.206 4 C -0.264 4.264 5 C 0.382 3.618 6 O -0.416 6.416 7 O -0.254 6.254 8 C -0.009 4.009 9 C 0.314 3.686 10 O -0.439 6.439 11 N -0.282 5.282 12 C 0.133 3.867 13 C -0.593 4.593 14 H 0.074 0.926 15 C -0.173 4.173 16 N -0.553 5.553 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.005 4.005 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.097 4.097 25 C -0.174 4.174 26 C 0.053 3.947 27 F -0.130 7.130 28 C 0.046 3.954 29 C -0.141 4.141 30 O -0.063 6.063 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.181 0.819 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.155 0.845 41 H 0.191 0.809 42 H 0.198 0.802 43 H 0.175 0.825 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.653 -2.554 -4.749 17.504 hybrid contribution 1.335 -0.183 1.315 1.883 sum -15.318 -2.737 -3.434 15.935 Atomic orbital electron populations 1.20576 0.81018 1.05758 1.05311 1.23012 0.95679 0.82323 1.04479 1.22807 0.89607 1.00931 1.07297 1.20242 0.92261 0.93091 1.20826 1.20401 0.88786 0.80404 0.72176 1.90831 1.30216 1.72817 1.47744 1.86539 1.34961 1.19707 1.84171 1.22578 0.84020 0.88324 1.05954 1.20132 0.84550 0.87902 0.75986 1.90629 1.21469 1.80681 1.51153 1.45568 1.08228 1.03094 1.71355 1.19336 0.75077 0.95239 0.97066 1.21660 0.98863 1.45986 0.92785 0.92633 1.25563 0.96373 0.94390 1.00971 1.69971 1.07999 1.44803 1.32486 0.85719 0.77674 0.78655 0.80394 1.19984 1.19859 1.19842 1.18023 1.04953 0.83958 0.93539 1.21479 0.98317 0.96158 0.95948 1.21529 0.98831 0.92306 1.00556 1.21537 0.96163 1.01936 0.90027 1.21440 1.03157 0.90467 1.02312 1.18602 1.03251 0.92338 0.80558 1.91438 1.93420 1.81713 1.46398 1.23175 0.84198 0.93042 0.94949 1.20793 0.90440 0.97224 1.05680 1.83758 1.15410 1.35929 1.71236 0.88125 0.88750 0.87704 0.81893 0.87096 0.88032 0.94285 0.95222 0.92065 0.84539 0.80930 0.80249 0.82548 0.87791 0.86880 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.40 71.23 0.74 -0.02 16 2 C -0.01 -0.15 7.28 24.75 0.18 0.03 16 3 C -0.19 -5.03 10.93 23.65 0.26 -4.77 16 4 C -0.26 -8.22 6.32 -19.00 -0.12 -8.34 16 5 C 0.54 20.32 7.95 70.19 0.56 20.88 16 6 O -0.52 -21.23 14.64 19.75 0.29 -20.94 16 7 O -0.34 -14.03 9.67 -50.44 -0.49 -14.52 16 8 C 0.07 2.93 4.51 71.23 0.32 3.26 16 9 C 0.53 24.38 7.72 87.65 0.68 25.06 16 10 O -0.56 -27.78 16.48 15.71 0.26 -27.52 16 11 N -0.55 -25.45 2.33 -635.05 -1.48 -26.93 16 12 C 0.25 12.64 4.96 85.63 0.42 13.07 16 13 C -0.55 -30.53 9.24 25.60 0.24 -30.29 16 14 H 0.06 3.18 6.42 -2.91 -0.02 3.17 16 15 C 0.03 1.55 5.46 84.65 0.46 2.01 16 16 N -0.91 -51.57 13.29 21.45 0.28 -51.29 16 17 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.09 3.58 4.47 38.16 0.17 3.75 16 22 C -0.10 -3.26 9.97 22.39 0.22 -3.04 16 23 C -0.11 -2.67 10.04 22.26 0.22 -2.44 16 24 C -0.08 -1.73 10.04 22.29 0.22 -1.51 16 25 C -0.15 -4.55 10.02 22.30 0.22 -4.33 16 26 C 0.07 2.97 7.31 22.48 0.16 3.13 16 27 F -0.15 -7.07 15.67 44.97 0.70 -6.37 16 28 C 0.10 2.54 7.38 25.28 0.19 2.73 16 29 C -0.09 -1.70 9.89 71.24 0.70 -0.99 16 30 O -0.17 -3.76 10.52 4.62 0.05 -3.71 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.11 4.50 7.40 -2.39 -0.02 4.48 16 36 H 0.10 4.69 8.00 -2.39 -0.02 4.67 16 37 H 0.04 1.98 6.44 -2.39 -0.02 1.97 16 38 H 0.03 1.55 8.05 -2.39 -0.02 1.54 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 2.24 6.49 -2.38 -0.02 2.23 16 Total: -1.00 -76.63 409.43 8.54 -68.09 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.03 Total: 18.81 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 5.86 Total: 18.18 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.19 Total: -78.22 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: 0.11 Total: -66.70 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.70 Total: -6.37 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.63 8.54 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028430554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.882 kcal (2) G-P(sol) polarization free energy of solvation -76.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds