Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30252 * 125.70842 * 2 1 4 4 N 1.39989 * 109.74790 * 180.02562 * 3 2 1 5 5 C 1.46505 * 125.90688 * 179.97438 * 4 3 2 6 6 C 1.37070 * 108.18615 * 0.02562 * 4 3 2 7 7 N 1.32546 * 133.44272 * 179.97438 * 6 4 3 8 8 C 1.31451 * 121.98656 * 180.02562 * 7 6 4 9 9 C 1.50706 * 119.16770 * 180.02562 * 8 7 6 10 10 C 1.52995 * 117.50518 * 163.72105 * 9 8 7 11 11 C 1.53000 * 117.49867 * 95.06112 * 9 8 7 12 12 C 1.38679 * 121.67422 * 359.97438 * 8 7 6 13 13 C 1.39332 * 119.35695 * 0.02562 * 12 8 7 14 14 C 1.47802 * 121.09116 * 179.97438 * 13 12 8 15 15 O 1.21560 * 120.00207 * 216.20549 * 14 13 12 16 16 N 1.34774 * 120.00098 * 36.21147 * 14 13 12 17 17 C 1.39086 * 120.00108 * 184.16778 * 16 14 13 18 18 C 1.39527 * 119.83265 * 219.88856 * 17 16 14 19 19 C 1.36363 * 120.16104 * 179.71953 * 18 17 16 20 20 C 1.40885 * 119.83093 * 0.56575 * 19 18 17 21 21 C 1.41121 * 120.15994 * 179.68269 * 20 19 18 22 22 H 1.08008 * 120.00046 * 204.90485 * 21 20 19 23 23 C 1.39919 * 120.00139 * 24.89396 * 21 20 19 24 24 N 1.30863 * 119.99641 * 19.46453 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 199.45642 * 23 21 20 26 26 H 1.48490 * 109.47211 * 90.00651 * 25 23 21 27 27 H 1.48502 * 109.47204 * 210.00486 * 25 23 21 28 28 H 1.48504 * 109.47337 * 330.00123 * 25 23 21 29 29 C 1.40885 * 119.67851 * 359.70576 * 20 19 18 30 30 C 1.36351 * 119.83294 * 0.02562 * 29 20 19 31 31 C 1.40924 * 106.34528 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47044 * 86.19842 * 1 2 3 33 33 H 1.08998 * 109.47395 * 206.20280 * 1 2 3 34 34 H 1.09002 * 109.47110 * 326.19955 * 1 2 3 35 35 H 1.08998 * 109.46741 * 90.02759 * 5 4 3 36 36 H 1.08999 * 109.46961 * 210.03003 * 5 4 3 37 37 H 1.09001 * 109.47033 * 330.02481 * 5 4 3 38 38 H 1.09008 * 115.54737 * 309.39748 * 9 8 7 39 39 H 1.09003 * 117.49656 * 0.02562 * 10 9 8 40 40 H 1.08997 * 117.49892 * 145.01954 * 10 9 8 41 41 H 1.09000 * 117.50012 * 214.98578 * 11 9 8 42 42 H 1.08995 * 117.50075 * 359.97438 * 11 9 8 43 43 H 1.08005 * 120.32222 * 179.97438 * 12 8 7 44 44 H 0.97003 * 120.00217 * 4.15919 * 16 14 13 45 45 H 1.07990 * 119.91995 * 359.97438 * 18 17 16 46 46 H 1.07997 * 120.08051 * 180.25600 * 19 18 17 47 47 H 0.97004 * 119.99804 * 179.97438 * 24 23 21 48 48 H 1.08001 * 120.08467 * 179.97438 * 29 20 19 49 49 H 1.08004 * 119.91910 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2672 1.0576 0.0000 4 7 3.6132 0.6727 -0.0006 5 6 4.7656 1.5774 -0.0013 6 6 3.6664 -0.6970 -0.0015 7 7 4.6634 -1.5703 -0.0028 8 6 4.4526 -2.8678 -0.0040 9 6 5.6337 -3.8039 -0.0049 10 6 5.3783 -5.2640 0.3741 11 6 6.1129 -4.3378 1.3465 12 6 3.1708 -3.3972 -0.0036 13 6 2.0759 -2.5356 -0.0023 14 6 0.6934 -3.0583 -0.0023 15 8 -0.1758 -2.4781 -0.6231 16 7 0.3963 -4.1782 0.6862 17 6 -0.8834 -4.7185 0.6165 18 6 -1.4803 -5.2398 1.7649 19 6 -2.7369 -5.7660 1.7053 20 6 -3.4278 -5.7933 0.4778 21 6 -4.7259 -6.3424 0.4069 22 1 -5.0964 -6.7336 -0.5291 23 6 -5.5329 -6.3802 1.5493 24 7 -5.2702 -5.5943 2.5622 25 14 -6.9853 -7.5522 1.6285 26 1 -6.5439 -8.8494 2.2007 27 1 -8.0466 -6.9679 2.4873 28 1 -7.5201 -7.7709 0.2605 29 6 -2.8163 -5.2703 -0.6786 30 6 -1.5614 -4.7423 -0.6026 31 6 2.3305 -1.1458 -0.0009 32 1 -0.3633 0.0681 -1.0254 33 1 -0.3634 -0.9220 0.4537 34 1 -0.3633 0.8540 0.5717 35 1 5.0521 1.8014 1.0262 36 1 5.6005 1.1018 -0.5159 37 1 4.5014 2.5018 -0.5148 38 1 6.3899 -3.6059 -0.7647 39 1 4.3559 -5.5477 0.6237 40 1 5.9666 -6.0266 -0.1360 41 1 7.1843 -4.4915 1.4757 42 1 5.5742 -4.0117 2.2362 43 1 3.0228 -4.4671 -0.0050 44 1 1.0750 -4.6074 1.2303 45 1 -0.9474 -5.2227 2.7040 46 1 -3.1992 -6.1654 2.5959 47 1 -5.8299 -5.6202 3.3541 48 1 -3.3398 -5.2883 -1.6231 49 1 -1.0915 -4.3406 -1.4882 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028437562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 124.624484 kcal Electronic energy + Delta-G solvation = -33222.669930 eV Core-core repulsion = 28924.201949 eV Total energy + Delta-G solvation = -4298.467981 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.01385 -39.75274 -39.07900 -37.38464 -36.54310 -34.71050 -34.33778 -33.19891 -32.03133 -30.21096 -29.65765 -29.40247 -28.97687 -25.96767 -25.59873 -24.72945 -23.76833 -22.64108 -21.94576 -21.25481 -20.73138 -20.21033 -19.25794 -17.66110 -17.52158 -17.40014 -17.24419 -16.36125 -16.13140 -15.83979 -15.28439 -15.17729 -15.03247 -14.43564 -14.03370 -13.94112 -13.68890 -13.68407 -13.33117 -13.13118 -12.97330 -12.83796 -12.72581 -12.31544 -12.17147 -12.00670 -11.94353 -11.82553 -11.75770 -11.34162 -11.18720 -11.11973 -10.98581 -10.81178 -10.77152 -10.71963 -10.47409 -10.19359 -9.86380 -9.64805 -9.40580 -9.19844 -8.93863 -8.87778 -8.38777 -7.62322 -7.11095 -6.84251 -4.37587 0.28994 0.96815 1.96327 2.26897 2.53567 2.92574 3.02495 3.04714 3.06849 3.19822 3.29716 3.51506 3.65040 3.79107 3.87139 4.17286 4.43219 4.48957 4.53641 4.55503 4.60722 4.77923 4.81402 4.97436 5.00082 5.16547 5.23204 5.24962 5.28023 5.36231 5.51162 5.61796 5.71405 5.78439 5.80616 5.89375 5.95652 6.00438 6.13710 6.17810 6.31923 6.54634 6.65691 6.71008 6.87599 6.96632 7.09916 7.19816 7.35200 7.50739 7.62134 7.71433 7.78703 7.95575 8.15384 8.19216 8.49570 8.60778 8.79925 8.90982 10.07990 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002187 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.669025 B =12800.830366 C =14416.871976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.130 3.870 3 N -0.249 5.249 4 N -0.395 5.395 5 C 0.116 3.884 6 C 0.317 3.683 7 N -0.492 5.492 8 C 0.229 3.771 9 C -0.111 4.111 10 C -0.169 4.169 11 C -0.159 4.159 12 C -0.189 4.189 13 C 0.015 3.985 14 C 0.534 3.466 15 O -0.504 6.504 16 N -0.634 5.634 17 C -0.018 4.018 18 C -0.104 4.104 19 C -0.157 4.157 20 C 0.111 3.889 21 C -0.455 4.455 22 H 0.080 0.920 23 C 0.076 3.924 24 N -0.785 5.785 25 Si 0.909 3.091 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.261 1.261 29 C -0.218 4.218 30 C -0.065 4.065 31 C -0.188 4.188 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.395 0.605 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.282 0.718 48 H 0.096 0.904 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.113 4.502 -0.710 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 N -0.065 5.065 4 N -0.185 5.185 5 C -0.025 4.025 6 C 0.077 3.923 7 N -0.207 5.207 8 C 0.079 3.921 9 C -0.130 4.130 10 C -0.207 4.207 11 C -0.197 4.197 12 C -0.211 4.211 13 C 0.000 4.000 14 C 0.320 3.680 15 O -0.381 6.381 16 N -0.276 5.276 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.177 4.177 20 C 0.108 3.892 21 C -0.484 4.484 22 H 0.098 0.902 23 C -0.143 4.143 24 N -0.409 5.409 25 Si 0.733 3.267 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.185 1.185 29 C -0.238 4.238 30 C -0.085 4.085 31 C -0.199 4.199 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.167 0.833 44 H 0.229 0.771 45 H 0.109 0.891 46 H 0.137 0.863 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.384 6.855 -0.937 21.526 hybrid contribution -0.905 -1.549 0.387 1.836 sum 19.479 5.305 -0.550 20.196 Atomic orbital electron populations 1.20661 0.84380 1.04542 1.04297 1.22488 0.97785 0.88177 0.96125 1.76902 0.85728 1.22637 1.21183 1.48228 1.04915 1.01186 1.64174 1.21763 0.84344 0.93231 1.03113 1.18853 0.89597 0.86365 0.97489 1.66052 1.34257 1.02103 1.18311 1.20062 0.92563 0.88066 0.91403 1.20790 0.97645 0.93411 1.01153 1.23173 1.02675 0.91792 1.03014 1.22999 1.01150 1.02601 0.92942 1.21926 0.91627 1.01125 1.06460 1.19985 0.94354 0.91403 0.94219 1.18033 0.86814 0.80975 0.82201 1.90795 1.47665 1.56951 1.42650 1.42853 1.12677 1.24754 1.47363 1.17022 0.86753 1.12577 0.94649 1.20243 0.95953 1.01746 0.94437 1.20846 0.92849 1.04884 0.99138 1.17668 0.92528 0.87967 0.91048 1.19605 0.98281 1.34299 0.96199 0.90164 1.25956 0.99173 0.94346 0.94870 1.69853 1.36505 1.29192 1.05396 0.86300 0.80110 0.80824 0.79485 1.19181 1.20277 1.18512 1.20622 0.96455 1.08120 0.98586 1.20160 0.95271 0.98381 0.94705 1.19190 0.93990 0.93725 1.12953 0.89387 0.87861 0.91287 0.91194 0.89339 0.89402 0.85696 0.87806 0.87681 0.87993 0.88471 0.83344 0.77074 0.89144 0.86333 0.90678 0.88615 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 8.85 36.01 0.32 -0.91 16 2 C 0.13 2.07 7.22 -82.18 -0.59 1.48 16 3 N -0.25 -3.84 12.44 33.83 0.42 -3.41 16 4 N -0.40 -5.48 4.07 -67.19 -0.27 -5.75 16 5 C 0.12 1.05 11.48 59.85 0.69 1.74 16 6 C 0.32 4.73 8.00 -156.07 -1.25 3.48 16 7 N -0.49 -6.64 10.25 -8.60 -0.09 -6.73 16 8 C 0.23 2.67 6.46 -82.59 -0.53 2.14 16 9 C -0.11 -0.94 6.20 -91.77 -0.57 -1.50 16 10 C -0.17 -1.11 9.78 -26.70 -0.26 -1.37 16 11 C -0.16 -1.11 10.24 -26.70 -0.27 -1.38 16 12 C -0.19 -2.27 8.67 -39.01 -0.34 -2.61 16 13 C 0.01 0.22 5.83 -104.42 -0.61 -0.39 16 14 C 0.53 9.19 6.61 -12.35 -0.08 9.11 16 15 O -0.50 -10.14 11.16 5.31 0.06 -10.08 16 16 N -0.63 -10.58 5.20 -10.61 -0.06 -10.63 16 17 C -0.02 -0.38 6.15 -83.61 -0.51 -0.89 16 18 C -0.10 -2.25 9.90 -39.78 -0.39 -2.64 16 19 C -0.16 -3.86 8.64 -39.26 -0.34 -4.20 16 20 C 0.11 2.84 5.56 -106.80 -0.59 2.24 16 21 C -0.46 -11.62 9.02 -37.86 -0.34 -11.96 16 22 H 0.08 1.97 7.92 -52.48 -0.42 1.56 16 23 C 0.08 1.82 5.09 -17.34 -0.09 1.74 16 24 N -0.78 -19.57 11.08 55.55 0.62 -18.95 16 25 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 28 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 29 C -0.22 -5.27 9.74 -39.26 -0.38 -5.65 16 30 C -0.07 -1.47 8.57 -39.78 -0.34 -1.81 16 31 C -0.19 -2.99 5.98 -106.63 -0.64 -3.63 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.80 5.22 -51.93 -0.27 1.52 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.10 0.67 6.35 -51.93 -0.33 0.34 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.15 1.43 5.97 -52.48 -0.31 1.12 16 44 H 0.40 5.21 8.24 -40.82 -0.34 4.87 16 45 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.12 2.99 6.24 -52.49 -0.33 2.66 16 47 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 48 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 49 H 0.10 2.12 6.87 -52.48 -0.36 1.76 16 LS Contribution 407.61 15.07 6.14 6.14 Total: -1.00 -30.47 407.61 -11.48 -41.95 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.14 Total: 11.58 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -7.13 Total: -17.03 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.62 Total: -45.49 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.06 Total: -10.08 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.47 -11.48 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.579 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds