Wall clock time and date at job start Tue Mar 31 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30252 * 125.70842 * 2 1 4 4 N 1.39989 * 109.74790 * 180.02562 * 3 2 1 5 5 C 1.46505 * 125.90688 * 179.97438 * 4 3 2 6 6 C 1.37070 * 108.18615 * 0.02562 * 4 3 2 7 7 N 1.32546 * 133.44272 * 179.97438 * 6 4 3 8 8 C 1.31451 * 121.98656 * 180.02562 * 7 6 4 9 9 C 1.50706 * 119.16770 * 180.02562 * 8 7 6 10 10 C 1.52995 * 117.50518 * 163.72105 * 9 8 7 11 11 C 1.53000 * 117.49867 * 95.06112 * 9 8 7 12 12 C 1.38679 * 121.67422 * 359.97438 * 8 7 6 13 13 C 1.39332 * 119.35695 * 0.02562 * 12 8 7 14 14 C 1.47802 * 121.09116 * 179.97438 * 13 12 8 15 15 O 1.21560 * 120.00207 * 216.20549 * 14 13 12 16 16 N 1.34774 * 120.00098 * 36.21147 * 14 13 12 17 17 C 1.39086 * 120.00108 * 184.16778 * 16 14 13 18 18 C 1.39527 * 119.83265 * 219.88856 * 17 16 14 19 19 C 1.36363 * 120.16104 * 179.71953 * 18 17 16 20 20 C 1.40885 * 119.83093 * 0.56575 * 19 18 17 21 21 C 1.41121 * 120.15994 * 179.68269 * 20 19 18 22 22 H 1.08008 * 120.00046 * 204.90485 * 21 20 19 23 23 C 1.39919 * 120.00139 * 24.89396 * 21 20 19 24 24 N 1.30863 * 119.99641 * 19.46453 * 23 21 20 25 25 Si 1.86797 * 120.00152 * 199.45642 * 23 21 20 26 26 H 1.48490 * 109.47211 * 90.00651 * 25 23 21 27 27 H 1.48502 * 109.47204 * 210.00486 * 25 23 21 28 28 H 1.48504 * 109.47337 * 330.00123 * 25 23 21 29 29 C 1.40885 * 119.67851 * 359.70576 * 20 19 18 30 30 C 1.36351 * 119.83294 * 0.02562 * 29 20 19 31 31 C 1.40924 * 106.34528 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47044 * 86.19842 * 1 2 3 33 33 H 1.08998 * 109.47395 * 206.20280 * 1 2 3 34 34 H 1.09002 * 109.47110 * 326.19955 * 1 2 3 35 35 H 1.08998 * 109.46741 * 90.02759 * 5 4 3 36 36 H 1.08999 * 109.46961 * 210.03003 * 5 4 3 37 37 H 1.09001 * 109.47033 * 330.02481 * 5 4 3 38 38 H 1.09008 * 115.54737 * 309.39748 * 9 8 7 39 39 H 1.09003 * 117.49656 * 0.02562 * 10 9 8 40 40 H 1.08997 * 117.49892 * 145.01954 * 10 9 8 41 41 H 1.09000 * 117.50012 * 214.98578 * 11 9 8 42 42 H 1.08995 * 117.50075 * 359.97438 * 11 9 8 43 43 H 1.08005 * 120.32222 * 179.97438 * 12 8 7 44 44 H 0.97003 * 120.00217 * 4.15919 * 16 14 13 45 45 H 1.07990 * 119.91995 * 359.97438 * 18 17 16 46 46 H 1.07997 * 120.08051 * 180.25600 * 19 18 17 47 47 H 0.97004 * 119.99804 * 179.97438 * 24 23 21 48 48 H 1.08001 * 120.08467 * 179.97438 * 29 20 19 49 49 H 1.08004 * 119.91910 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2672 1.0576 0.0000 4 7 3.6132 0.6727 -0.0006 5 6 4.7656 1.5774 -0.0013 6 6 3.6664 -0.6970 -0.0015 7 7 4.6634 -1.5703 -0.0028 8 6 4.4526 -2.8678 -0.0040 9 6 5.6337 -3.8039 -0.0049 10 6 5.3783 -5.2640 0.3741 11 6 6.1129 -4.3378 1.3465 12 6 3.1708 -3.3972 -0.0036 13 6 2.0759 -2.5356 -0.0023 14 6 0.6934 -3.0583 -0.0023 15 8 -0.1758 -2.4781 -0.6231 16 7 0.3963 -4.1782 0.6862 17 6 -0.8834 -4.7185 0.6165 18 6 -1.4803 -5.2398 1.7649 19 6 -2.7369 -5.7660 1.7053 20 6 -3.4278 -5.7933 0.4778 21 6 -4.7259 -6.3424 0.4069 22 1 -5.0964 -6.7336 -0.5291 23 6 -5.5329 -6.3802 1.5493 24 7 -5.2702 -5.5943 2.5622 25 14 -6.9853 -7.5522 1.6285 26 1 -6.5439 -8.8494 2.2007 27 1 -8.0466 -6.9679 2.4873 28 1 -7.5201 -7.7709 0.2605 29 6 -2.8163 -5.2703 -0.6786 30 6 -1.5614 -4.7423 -0.6026 31 6 2.3305 -1.1458 -0.0009 32 1 -0.3633 0.0681 -1.0254 33 1 -0.3634 -0.9220 0.4537 34 1 -0.3633 0.8540 0.5717 35 1 5.0521 1.8014 1.0262 36 1 5.6005 1.1018 -0.5159 37 1 4.5014 2.5018 -0.5148 38 1 6.3899 -3.6059 -0.7647 39 1 4.3559 -5.5477 0.6237 40 1 5.9666 -6.0266 -0.1360 41 1 7.1843 -4.4915 1.4757 42 1 5.5742 -4.0117 2.2362 43 1 3.0228 -4.4671 -0.0050 44 1 1.0750 -4.6074 1.2303 45 1 -0.9474 -5.2227 2.7040 46 1 -3.1992 -6.1654 2.5959 47 1 -5.8299 -5.6202 3.3541 48 1 -3.3398 -5.2883 -1.6231 49 1 -1.0915 -4.3406 -1.4882 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028437562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:08 Heat of formation + Delta-G solvation = 109.312339 kcal Electronic energy + Delta-G solvation = -33223.333914 eV Core-core repulsion = 28924.201949 eV Total energy + Delta-G solvation = -4299.131965 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.09614 -41.19603 -40.03222 -39.08148 -37.30578 -36.30012 -35.47057 -34.85650 -33.20942 -31.46518 -31.19496 -30.73230 -30.48222 -27.34051 -26.74665 -25.89723 -24.89533 -23.57896 -23.09362 -22.74711 -22.07682 -21.39667 -20.57299 -19.26528 -18.81956 -18.53619 -18.35502 -17.80477 -17.22082 -17.02796 -16.77177 -16.41731 -15.78641 -15.69433 -15.64464 -15.28955 -14.99058 -14.60628 -14.48485 -14.43678 -14.39653 -13.97231 -13.95412 -13.74347 -13.69364 -13.29926 -13.10246 -13.01441 -12.87029 -12.76827 -12.72522 -12.43451 -12.27325 -12.02717 -11.79763 -11.57776 -11.48721 -11.41515 -11.33961 -11.32404 -11.04678 -10.68628 -10.48432 -9.90761 -9.45915 -9.43050 -8.90074 -8.62593 -6.27115 -0.81892 -0.06502 0.80862 0.99827 1.13780 1.17463 1.41047 1.47945 1.54036 1.74118 2.07212 2.22683 2.46584 2.69230 2.74257 3.04774 3.14060 3.37094 3.47867 3.60620 3.73565 3.95748 4.00744 4.04281 4.14691 4.21512 4.31386 4.34435 4.38847 4.42225 4.49404 4.58790 4.62265 4.68610 4.77514 4.87656 4.88381 4.95062 5.08024 5.10260 5.13618 5.17643 5.21486 5.30666 5.32444 5.37623 5.43687 5.66589 5.70095 5.89683 6.03040 6.09693 6.24663 6.36746 6.59241 6.66591 6.68212 6.93203 6.97716 7.24983 8.31386 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002187 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.669025 B =12800.830366 C =14416.871976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.110 3.890 3 N -0.259 5.259 4 N -0.393 5.393 5 C 0.107 3.893 6 C 0.304 3.696 7 N -0.493 5.493 8 C 0.232 3.768 9 C -0.127 4.127 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.171 4.171 13 C -0.001 4.001 14 C 0.540 3.460 15 O -0.535 6.535 16 N -0.626 5.626 17 C 0.003 3.997 18 C -0.102 4.102 19 C -0.175 4.175 20 C 0.081 3.919 21 C -0.493 4.493 22 H 0.076 0.924 23 C 0.037 3.963 24 N -0.818 5.818 25 Si 0.981 3.019 26 H -0.259 1.259 27 H -0.269 1.269 28 H -0.260 1.260 29 C -0.234 4.234 30 C -0.073 4.073 31 C -0.214 4.214 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.176 0.824 44 H 0.416 0.584 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.290 0.710 48 H 0.095 0.905 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.845 3.665 -0.089 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 N -0.075 5.075 4 N -0.184 5.184 5 C -0.032 4.032 6 C 0.064 3.936 7 N -0.208 5.208 8 C 0.082 3.918 9 C -0.146 4.146 10 C -0.195 4.195 11 C -0.191 4.191 12 C -0.193 4.193 13 C -0.015 4.015 14 C 0.328 3.672 15 O -0.413 6.413 16 N -0.270 5.270 17 C -0.090 4.090 18 C -0.122 4.122 19 C -0.195 4.195 20 C 0.078 3.922 21 C -0.522 4.522 22 H 0.094 0.906 23 C -0.179 4.179 24 N -0.444 5.444 25 Si 0.802 3.198 26 H -0.183 1.183 27 H -0.194 1.194 28 H -0.184 1.184 29 C -0.254 4.254 30 C -0.093 4.093 31 C -0.225 4.225 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.108 0.892 43 H 0.193 0.807 44 H 0.254 0.746 45 H 0.139 0.861 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 23.162 6.037 -0.308 23.938 hybrid contribution -1.458 -1.184 0.165 1.885 sum 21.705 4.853 -0.143 22.241 Atomic orbital electron populations 1.20484 0.84654 1.03895 1.03907 1.22520 0.97915 0.88746 0.97302 1.76808 0.86741 1.22706 1.21251 1.48608 1.05138 1.01550 1.63055 1.22133 0.83248 0.93263 1.04580 1.19049 0.89504 0.87017 0.98040 1.66198 1.33643 1.02697 1.18300 1.20683 0.93652 0.87960 0.89496 1.20896 0.96966 0.93991 1.02727 1.23323 1.03145 0.90930 1.02124 1.23091 1.02271 1.01914 0.91847 1.22250 0.90937 1.02060 1.04056 1.19755 0.93487 0.91569 0.96664 1.18347 0.87550 0.80408 0.80927 1.90790 1.48998 1.57784 1.43742 1.42677 1.11639 1.24915 1.47817 1.17014 0.87885 1.10407 0.93649 1.20483 0.95161 1.00647 0.95908 1.20845 0.94075 1.06167 0.98436 1.17973 0.93257 0.88995 0.91940 1.19808 0.99104 1.36276 0.97010 0.90610 1.26750 1.01717 0.95369 0.94026 1.69891 1.38024 1.30332 1.06109 0.85211 0.76573 0.78557 0.79448 1.18348 1.19394 1.18412 1.20747 0.97387 1.08820 0.98446 1.20261 0.95005 0.98305 0.95685 1.19392 0.94681 0.94132 1.14276 0.89982 0.90080 0.89885 0.89658 0.88032 0.87890 0.84681 0.87553 0.85795 0.86252 0.89177 0.80683 0.74629 0.86084 0.87504 0.89934 0.88712 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 8.85 71.24 0.63 -1.62 16 2 C 0.11 3.56 7.22 43.50 0.31 3.87 16 3 N -0.26 -7.92 12.44 -46.89 -0.58 -8.51 16 4 N -0.39 -10.51 4.07 -366.49 -1.49 -12.00 16 5 C 0.11 1.73 11.48 127.77 1.47 3.20 16 6 C 0.30 8.75 8.00 134.11 1.07 9.83 16 7 N -0.49 -12.36 10.25 -181.11 -1.86 -14.22 16 8 C 0.23 4.84 6.46 42.72 0.28 5.12 16 9 C -0.13 -1.71 6.20 -11.54 -0.07 -1.78 16 10 C -0.16 -1.43 9.78 30.62 0.30 -1.14 16 11 C -0.15 -1.58 10.24 30.62 0.31 -1.26 16 12 C -0.17 -3.70 8.67 22.64 0.20 -3.51 16 13 C 0.00 -0.02 5.83 -19.73 -0.11 -0.14 16 14 C 0.54 18.31 6.61 86.77 0.57 18.88 16 15 O -0.54 -21.88 11.16 -3.90 -0.04 -21.92 16 16 N -0.63 -19.96 5.20 -305.76 -1.59 -21.54 16 17 C 0.00 0.14 6.15 38.61 0.24 0.38 16 18 C -0.10 -4.38 9.90 22.14 0.22 -4.16 16 19 C -0.18 -8.79 8.64 22.48 0.19 -8.60 16 20 C 0.08 4.31 5.56 -21.28 -0.12 4.19 16 21 C -0.49 -26.19 9.02 23.39 0.21 -25.98 16 22 H 0.08 3.91 7.92 -2.91 -0.02 3.89 16 23 C 0.04 1.84 5.09 85.24 0.43 2.27 16 24 N -0.82 -41.78 11.08 21.82 0.24 -41.54 16 25 Si 0.98 37.27 29.60 68.60 2.03 39.30 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 27 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 28 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 29 C -0.23 -11.73 9.74 22.48 0.22 -11.51 16 30 C -0.07 -3.32 8.57 22.14 0.19 -3.13 16 31 C -0.21 -6.76 5.98 -21.17 -0.13 -6.89 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.08 2.93 5.22 -2.39 -0.01 2.92 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.11 0.92 6.35 -2.39 -0.02 0.91 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.18 2.74 5.97 -2.91 -0.02 2.73 16 44 H 0.42 9.85 8.24 -92.71 -0.76 9.09 16 45 H 0.12 4.37 8.06 -2.92 -0.02 4.35 16 46 H 0.11 5.55 6.24 -2.91 -0.02 5.53 16 47 H 0.29 13.32 8.30 -92.70 -0.77 12.55 16 48 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 49 H 0.10 4.46 6.87 -2.91 -0.02 4.44 16 Total: -1.00 -68.79 407.61 3.38 -65.40 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.26 Total: 36.99 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 6.42 Total: -21.96 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -5.28 Total: -97.81 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.04 Total: -21.92 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Total: -68.79 3.38 -65.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028437562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.715 kcal (2) G-P(sol) polarization free energy of solvation -68.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds