Wall clock time and date at job start Tue Mar 31 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35712 * 117.00195 * 2 1 4 4 C 1.39025 * 119.90673 * 0.02562 * 3 2 1 5 5 C 1.37678 * 120.09059 * 179.76744 * 4 3 2 6 6 C 1.39785 * 119.90402 * 0.44524 * 5 4 3 7 7 C 1.47554 * 120.08514 * 179.81069 * 6 5 4 8 8 O 1.21592 * 119.99791 * 179.72157 * 7 6 5 9 9 N 1.34777 * 120.00291 * 359.72659 * 7 6 5 10 10 C 1.39129 * 119.99820 * 174.86109 * 9 7 6 11 11 C 1.39509 * 119.83925 * 326.01972 * 10 9 7 12 12 C 1.36352 * 120.16769 * 179.72895 * 11 10 9 13 13 C 1.40875 * 119.83308 * 0.27428 * 12 11 10 14 14 C 1.41141 * 120.16430 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99601 * 27.83659 * 14 13 12 16 16 C 1.39905 * 120.00284 * 207.83008 * 14 13 12 17 17 N 1.30879 * 119.99658 * 11.32898 * 16 14 13 18 18 Si 1.86796 * 120.00134 * 191.33008 * 16 14 13 19 19 H 1.48496 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47406 * 120.00271 * 18 16 14 21 21 H 1.48511 * 109.47003 * 240.00061 * 18 16 14 22 22 C 1.40883 * 119.67734 * 0.02562 * 13 12 11 23 23 C 1.36359 * 119.83021 * 359.97438 * 22 13 12 24 24 C 1.39731 * 119.82106 * 359.53458 * 6 5 4 25 25 C 1.37715 * 119.91419 * 0.25180 * 24 6 5 26 26 S 1.76191 * 119.95920 * 179.97438 * 25 24 6 27 27 N 1.65605 * 107.21672 * 115.00284 * 26 25 24 28 28 O 1.42099 * 106.40246 * 228.53904 * 26 25 24 29 29 O 1.42100 * 106.40204 * 1.46438 * 26 25 24 30 30 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47192 * 300.01008 * 1 2 3 32 32 H 1.09004 * 109.47134 * 60.00147 * 1 2 3 33 33 H 1.07993 * 119.95520 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.04615 * 180.25812 * 5 4 3 35 35 H 0.97002 * 120.00183 * 354.85130 * 9 7 6 36 36 H 1.08000 * 119.91431 * 0.02562 * 11 10 9 37 37 H 1.07998 * 120.08505 * 180.30069 * 12 11 10 38 38 H 0.96999 * 119.99371 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08482 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.91821 * 180.02562 * 23 22 13 41 41 H 1.08003 * 120.04602 * 180.23600 * 24 6 5 42 42 H 0.96997 * 120.00192 * 359.97438 * 27 26 25 43 43 H 0.97002 * 119.99843 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9072 3.6026 0.0054 6 6 3.3030 3.6779 0.0003 7 6 3.9729 4.9926 0.0013 8 8 5.1871 5.0563 0.0020 9 7 3.2388 6.1230 0.0014 10 6 3.8664 7.3599 0.1102 11 6 5.0208 7.4870 0.8833 12 6 5.6444 8.6949 0.9901 13 6 5.1169 9.8174 0.3221 14 6 5.7570 11.0709 0.4274 15 1 6.8209 11.1205 0.6066 16 6 5.0135 12.2491 0.2994 17 7 3.7056 12.2013 0.3047 18 14 5.8874 13.8904 0.1210 19 1 7.3564 13.6742 0.1450 20 1 5.5002 14.5200 -1.1669 21 1 5.5004 14.7819 1.2439 22 6 3.9473 9.6828 -0.4517 23 6 3.3346 8.4685 -0.5492 24 6 4.0622 2.5048 0.0002 25 6 3.4332 1.2797 -0.0001 26 16 4.3893 -0.2002 -0.0009 27 7 4.0940 -0.9753 1.4324 28 8 3.8487 -1.0266 -1.0227 29 8 5.7517 0.2022 0.0338 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2078 2.3149 0.0014 34 1 1.3169 4.5069 0.0100 35 1 2.2730 6.0742 -0.0745 36 1 5.4242 6.6255 1.3946 37 1 6.5406 8.7907 1.5850 38 1 3.1901 13.0181 0.2156 39 1 3.5374 10.5389 -0.9669 40 1 2.4381 8.3636 -1.1423 41 1 5.1409 2.5588 0.0002 42 1 3.4841 -0.5853 2.0781 43 1 4.5314 -1.8190 1.6267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029704045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:20 Heat of formation + Delta-G solvation = -89.551518 kcal Electronic energy + Delta-G solvation = -30687.630943 eV Core-core repulsion = 26211.360605 eV Total energy + Delta-G solvation = -4476.270338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96538 -39.78948 -37.95659 -37.21602 -36.94330 -35.97302 -34.60877 -33.44503 -33.15524 -31.97372 -30.91451 -29.62978 -28.94991 -27.96315 -25.26005 -24.04386 -23.29679 -21.69537 -20.97918 -20.27481 -19.56184 -19.16882 -18.01530 -17.67381 -17.43203 -17.20314 -17.07313 -16.41827 -16.10049 -15.70645 -15.50938 -15.22630 -14.82195 -14.77244 -14.36067 -14.26997 -13.96892 -13.36867 -13.31697 -12.96607 -12.73499 -12.47814 -12.33521 -12.23087 -12.18247 -12.17343 -12.07677 -11.83516 -11.66878 -11.48206 -11.17387 -11.06085 -10.94102 -10.72487 -10.58751 -10.15268 -9.98425 -9.81695 -9.51357 -9.30555 -8.90241 -8.80465 -7.60202 -7.00806 -6.77062 -4.35359 0.12140 0.34372 0.63773 2.37719 2.46816 2.72398 2.92693 3.04364 3.06502 3.11642 3.12301 3.38193 3.50416 3.70229 3.91212 4.08627 4.19288 4.50705 4.56726 4.60745 4.61614 4.72374 4.84270 4.97161 5.05566 5.26693 5.40239 5.60153 5.65822 5.71463 5.77768 6.05396 6.13904 6.36374 6.53080 6.68558 6.74075 6.86088 7.00012 7.13623 7.22586 7.55694 7.65237 7.81203 7.99614 8.18619 8.23385 8.54159 8.64356 8.84918 8.93713 10.16332 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.001777 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.174374 B =15752.722695 C =16735.934104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.235 3.765 4 C -0.232 4.232 5 C 0.006 3.994 6 C -0.176 4.176 7 C 0.542 3.458 8 O -0.523 6.523 9 N -0.642 5.642 10 C -0.007 4.007 11 C -0.076 4.076 12 C -0.212 4.212 13 C 0.105 3.895 14 C -0.455 4.455 15 H 0.079 0.921 16 C 0.071 3.929 17 N -0.800 5.800 18 Si 0.912 3.088 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.148 4.148 23 C -0.113 4.113 24 C 0.073 3.927 25 C -0.713 4.713 26 S 2.711 3.289 27 N -1.247 6.247 28 O -0.953 6.953 29 O -0.960 6.960 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.393 0.607 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.279 0.721 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.167 0.833 42 H 0.415 0.585 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 -22.471 2.304 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.186 3.814 4 C -0.251 4.251 5 C -0.013 4.013 6 C -0.180 4.180 7 C 0.329 3.671 8 O -0.400 6.400 9 N -0.285 5.285 10 C -0.099 4.099 11 C -0.096 4.096 12 C -0.232 4.232 13 C 0.103 3.897 14 C -0.484 4.484 15 H 0.097 0.903 16 C -0.145 4.145 17 N -0.426 5.426 18 Si 0.737 3.263 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.168 4.168 23 C -0.134 4.134 24 C 0.053 3.947 25 C -0.800 4.800 26 S 2.798 3.202 27 N -0.921 5.921 28 O -0.942 6.942 29 O -0.950 6.950 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.227 0.773 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.184 0.816 42 H 0.242 0.758 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.173 -22.660 1.447 24.881 hybrid contribution -1.290 1.315 0.554 1.924 sum -11.464 -21.345 2.001 24.311 Atomic orbital electron populations 1.23281 0.76490 1.05127 1.02229 1.86101 1.23179 1.25907 1.86526 1.18572 0.90399 0.85150 0.87255 1.21253 1.00741 0.91731 1.11364 1.21496 0.93626 0.97914 0.88241 1.20151 0.93618 0.94469 1.09806 1.17944 0.87259 0.83429 0.78488 1.90814 1.13090 1.86824 1.49319 1.42859 1.09295 1.04970 1.71364 1.17133 1.00490 0.83365 1.08958 1.20264 0.95041 0.96952 0.97320 1.20707 1.03058 0.93474 1.05960 1.17711 0.91383 0.92334 0.88298 1.19614 0.96125 0.90098 1.42600 0.90302 1.25931 0.94763 1.01517 0.92303 1.69816 1.06272 1.30340 1.36195 0.86196 0.80788 0.80783 0.78570 1.18399 1.19764 1.19996 1.20980 0.98635 0.95572 1.01652 1.20235 0.99898 0.93170 1.00047 1.21007 1.01690 0.88446 0.83543 1.29801 1.03461 1.19289 1.27471 1.01354 0.73182 0.72884 0.72788 1.52951 1.62668 1.37647 1.38836 1.93611 1.79473 1.65910 1.55253 1.93630 1.32660 1.82603 1.86080 0.87195 0.91737 0.91625 0.83720 0.84180 0.77302 0.87917 0.88523 0.90985 0.85715 0.89153 0.81571 0.75796 0.75049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.42 9.26 -28.82 -0.27 -2.69 16 3 C 0.24 2.19 6.65 -39.01 -0.26 1.94 16 4 C -0.23 -1.84 9.01 -39.49 -0.36 -2.19 16 5 C 0.01 0.06 9.53 -39.21 -0.37 -0.31 16 6 C -0.18 -2.34 5.87 -104.96 -0.62 -2.96 16 7 C 0.54 9.48 7.48 -12.46 -0.09 9.38 16 8 O -0.52 -11.30 14.02 5.28 0.07 -11.22 16 9 N -0.64 -11.00 5.25 -10.67 -0.06 -11.05 16 10 C -0.01 -0.16 6.28 -83.60 -0.52 -0.69 16 11 C -0.08 -1.80 8.57 -39.79 -0.34 -2.14 16 12 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 13 C 0.11 2.79 5.56 -106.80 -0.59 2.20 16 14 C -0.45 -11.94 9.05 -37.86 -0.34 -12.29 16 15 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 16 C 0.07 1.76 5.25 -17.33 -0.09 1.67 16 17 N -0.80 -20.13 10.80 55.55 0.60 -19.53 16 18 Si 0.91 18.48 29.57 -169.99 -5.03 13.45 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.15 -3.75 8.61 -39.26 -0.34 -4.09 16 23 C -0.11 -2.53 9.89 -39.78 -0.39 -2.92 16 24 C 0.07 0.96 9.08 -39.22 -0.36 0.60 16 25 C -0.71 -7.88 5.88 -39.50 -0.23 -8.11 16 26 S 2.71 29.17 5.86 -107.50 -0.63 28.54 16 27 N -1.25 -7.84 9.55 60.35 0.58 -7.27 16 28 O -0.95 -12.81 17.29 -62.56 -1.08 -13.89 16 29 O -0.96 -13.50 16.96 -57.17 -0.97 -14.47 16 30 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 32 H 0.07 0.21 7.65 -51.93 -0.40 -0.19 16 33 H 0.15 0.66 6.28 -52.49 -0.33 0.33 16 34 H 0.14 0.98 6.41 -52.49 -0.34 0.64 16 35 H 0.39 5.08 6.85 -40.82 -0.28 4.80 16 36 H 0.10 2.40 6.43 -52.49 -0.34 2.06 16 37 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 39 H 0.13 3.23 6.16 -52.49 -0.32 2.91 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.17 2.35 6.91 -52.48 -0.36 1.99 16 42 H 0.42 1.74 8.92 -34.48 -0.31 1.43 16 43 H 0.42 1.80 8.96 -34.47 -0.31 1.49 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -36.50 378.78 -9.57 -46.07 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.20 Total: 10.89 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -4.30 Total: -24.54 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.12 Total: -37.85 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.24 Total: -42.27 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 29.17 SS G_CDS: -0.63 Total: 28.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.50 -9.57 -46.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029704045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.484 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds