Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35712 * 117.00195 * 2 1 4 4 C 1.39025 * 119.90673 * 0.02562 * 3 2 1 5 5 C 1.37678 * 120.09059 * 179.76744 * 4 3 2 6 6 C 1.39785 * 119.90402 * 0.44524 * 5 4 3 7 7 C 1.47554 * 120.08514 * 179.81069 * 6 5 4 8 8 O 1.21592 * 119.99791 * 179.72157 * 7 6 5 9 9 N 1.34777 * 120.00291 * 359.72659 * 7 6 5 10 10 C 1.39129 * 119.99820 * 174.86109 * 9 7 6 11 11 C 1.39509 * 119.83925 * 326.01972 * 10 9 7 12 12 C 1.36352 * 120.16769 * 179.72895 * 11 10 9 13 13 C 1.40875 * 119.83308 * 0.27428 * 12 11 10 14 14 C 1.41141 * 120.16430 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99601 * 27.83659 * 14 13 12 16 16 C 1.39905 * 120.00284 * 207.83008 * 14 13 12 17 17 N 1.30879 * 119.99658 * 11.32898 * 16 14 13 18 18 Si 1.86796 * 120.00134 * 191.33008 * 16 14 13 19 19 H 1.48496 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47406 * 120.00271 * 18 16 14 21 21 H 1.48511 * 109.47003 * 240.00061 * 18 16 14 22 22 C 1.40883 * 119.67734 * 0.02562 * 13 12 11 23 23 C 1.36359 * 119.83021 * 359.97438 * 22 13 12 24 24 C 1.39731 * 119.82106 * 359.53458 * 6 5 4 25 25 C 1.37715 * 119.91419 * 0.25180 * 24 6 5 26 26 S 1.76191 * 119.95920 * 179.97438 * 25 24 6 27 27 N 1.65605 * 107.21672 * 115.00284 * 26 25 24 28 28 O 1.42099 * 106.40246 * 228.53904 * 26 25 24 29 29 O 1.42100 * 106.40204 * 1.46438 * 26 25 24 30 30 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47192 * 300.01008 * 1 2 3 32 32 H 1.09004 * 109.47134 * 60.00147 * 1 2 3 33 33 H 1.07993 * 119.95520 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.04615 * 180.25812 * 5 4 3 35 35 H 0.97002 * 120.00183 * 354.85130 * 9 7 6 36 36 H 1.08000 * 119.91431 * 0.02562 * 11 10 9 37 37 H 1.07998 * 120.08505 * 180.30069 * 12 11 10 38 38 H 0.96999 * 119.99371 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08482 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.91821 * 180.02562 * 23 22 13 41 41 H 1.08003 * 120.04602 * 180.23600 * 24 6 5 42 42 H 0.96997 * 120.00192 * 359.97438 * 27 26 25 43 43 H 0.97002 * 119.99843 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9072 3.6026 0.0054 6 6 3.3030 3.6779 0.0003 7 6 3.9729 4.9926 0.0013 8 8 5.1871 5.0563 0.0020 9 7 3.2388 6.1230 0.0014 10 6 3.8664 7.3599 0.1102 11 6 5.0208 7.4870 0.8833 12 6 5.6444 8.6949 0.9901 13 6 5.1169 9.8174 0.3221 14 6 5.7570 11.0709 0.4274 15 1 6.8209 11.1205 0.6066 16 6 5.0135 12.2491 0.2994 17 7 3.7056 12.2013 0.3047 18 14 5.8874 13.8904 0.1210 19 1 7.3564 13.6742 0.1450 20 1 5.5002 14.5200 -1.1669 21 1 5.5004 14.7819 1.2439 22 6 3.9473 9.6828 -0.4517 23 6 3.3346 8.4685 -0.5492 24 6 4.0622 2.5048 0.0002 25 6 3.4332 1.2797 -0.0001 26 16 4.3893 -0.2002 -0.0009 27 7 4.0940 -0.9753 1.4324 28 8 3.8487 -1.0266 -1.0227 29 8 5.7517 0.2022 0.0338 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2078 2.3149 0.0014 34 1 1.3169 4.5069 0.0100 35 1 2.2730 6.0742 -0.0745 36 1 5.4242 6.6255 1.3946 37 1 6.5406 8.7907 1.5850 38 1 3.1901 13.0181 0.2156 39 1 3.5374 10.5389 -0.9669 40 1 2.4381 8.3636 -1.1423 41 1 5.1409 2.5588 0.0002 42 1 3.4841 -0.5853 2.0781 43 1 4.5314 -1.8190 1.6267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029704045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -118.109049 kcal Electronic energy + Delta-G solvation = -30688.869291 eV Core-core repulsion = 26211.360605 eV Total energy + Delta-G solvation = -4477.508685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86710 -41.00269 -39.30589 -38.38530 -38.02933 -36.95071 -36.28228 -34.85855 -34.08151 -32.87008 -31.88339 -31.47619 -30.59434 -28.51515 -26.90939 -24.95902 -24.40134 -23.29484 -22.54964 -21.63108 -20.59041 -20.00197 -19.29464 -18.84973 -18.53834 -18.30817 -18.10815 -17.32018 -16.98225 -16.92750 -16.60074 -16.34163 -16.25019 -15.70667 -15.62046 -15.55862 -15.07667 -14.86555 -14.50762 -14.11841 -13.99981 -13.90804 -13.62232 -13.37145 -13.27955 -13.23246 -13.16956 -13.08083 -12.81385 -12.79646 -12.69025 -12.40421 -12.18290 -11.90021 -11.80996 -11.57569 -11.35078 -11.24463 -11.00309 -10.76524 -10.55578 -9.71574 -9.49578 -8.83649 -8.60550 -6.29812 -0.69148 -0.50424 -0.25350 0.80303 1.12664 1.39786 1.42503 1.54351 1.65538 1.90434 2.12241 2.17823 2.22613 2.41379 2.63957 2.77908 3.31516 3.52910 3.61099 3.72206 3.76586 4.05185 4.18238 4.30334 4.37720 4.43280 4.43804 4.48269 4.63275 4.75791 4.86885 4.92188 4.95875 5.08840 5.12411 5.25390 5.26397 5.30300 5.40395 5.65309 5.86726 5.95178 6.00140 6.08864 6.33529 6.35256 6.62218 6.65793 6.92689 6.96487 7.28404 8.35186 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.001777 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.174374 B =15752.722695 C =16735.934104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.314 6.314 3 C 0.246 3.754 4 C -0.216 4.216 5 C 0.019 3.981 6 C -0.198 4.198 7 C 0.544 3.456 8 O -0.573 6.573 9 N -0.633 5.633 10 C 0.010 3.990 11 C -0.089 4.089 12 C -0.231 4.231 13 C 0.074 3.926 14 C -0.494 4.494 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.826 5.826 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.262 1.262 21 H -0.265 1.265 22 C -0.166 4.166 23 C -0.110 4.110 24 C 0.058 3.942 25 C -0.720 4.720 26 S 2.727 3.273 27 N -1.228 6.228 28 O -0.982 6.982 29 O -1.002 7.002 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.191 0.809 34 H 0.172 0.828 35 H 0.417 0.583 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.289 0.711 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.428 0.572 43 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 -23.655 2.327 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.226 6.226 3 C 0.196 3.804 4 C -0.235 4.235 5 C 0.000 4.000 6 C -0.203 4.203 7 C 0.334 3.666 8 O -0.454 6.454 9 N -0.278 5.278 10 C -0.083 4.083 11 C -0.109 4.109 12 C -0.251 4.251 13 C 0.071 3.929 14 C -0.524 4.524 15 H 0.089 0.911 16 C -0.181 4.181 17 N -0.452 5.452 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.186 1.186 21 H -0.189 1.189 22 C -0.186 4.186 23 C -0.130 4.130 24 C 0.038 3.962 25 C -0.808 4.808 26 S 2.815 3.185 27 N -0.908 5.908 28 O -0.971 6.971 29 O -0.991 6.991 30 H 0.145 0.855 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.208 0.792 34 H 0.189 0.811 35 H 0.256 0.744 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.258 0.742 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.041 -23.903 1.480 27.761 hybrid contribution -0.287 1.361 0.580 1.507 sum -14.328 -22.542 2.060 26.789 Atomic orbital electron populations 1.23751 0.73947 1.07069 1.04043 1.86125 1.25742 1.25086 1.85607 1.18716 0.89800 0.86497 0.85414 1.21700 1.02779 0.90091 1.08933 1.21791 0.91726 1.00043 0.86415 1.19772 0.95329 0.91662 1.13487 1.18595 0.86769 0.84756 0.76516 1.90791 1.15580 1.87692 1.51341 1.42691 1.10511 1.03275 1.71363 1.17177 0.99360 0.85147 1.06654 1.20376 0.96101 0.96287 0.98139 1.20825 1.03537 0.94135 1.06606 1.18024 0.92558 0.92901 0.89371 1.19790 0.96108 0.91289 1.45188 0.91095 1.26715 0.95435 1.04571 0.91339 1.69843 1.07356 1.31823 1.36224 0.85115 0.79182 0.76086 0.79045 1.18725 1.18649 1.18945 1.20994 0.98913 0.96561 1.02157 1.20512 1.00710 0.92073 0.99661 1.20811 1.00848 0.89591 0.84937 1.29556 1.04691 1.17909 1.28662 1.00514 0.72222 0.72549 0.73172 1.52510 1.62888 1.37815 1.37618 1.93575 1.79688 1.66704 1.57113 1.93586 1.35397 1.83248 1.86892 0.85511 0.89228 0.90374 0.79192 0.81063 0.74439 0.88113 0.88831 0.90044 0.86707 0.85383 0.84075 0.74215 0.73626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.80 9.26 -80.80 -0.75 -4.54 16 3 C 0.25 3.78 6.65 22.64 0.15 3.93 16 4 C -0.22 -2.35 9.01 22.33 0.20 -2.15 16 5 C 0.02 0.28 9.53 22.51 0.21 0.50 16 6 C -0.20 -5.04 5.87 -20.09 -0.12 -5.16 16 7 C 0.54 18.93 7.48 86.70 0.65 19.58 16 8 O -0.57 -25.78 14.02 -4.01 -0.06 -25.84 16 9 N -0.63 -20.70 5.25 -305.94 -1.61 -22.31 16 10 C 0.01 0.43 6.28 38.60 0.24 0.67 16 11 C -0.09 -4.36 8.57 22.14 0.19 -4.17 16 12 C -0.23 -12.23 9.74 22.48 0.22 -12.01 16 13 C 0.07 4.09 5.56 -21.27 -0.12 3.97 16 14 C -0.49 -27.13 9.05 23.39 0.21 -26.92 16 15 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 16 C 0.03 1.68 5.25 85.24 0.45 2.13 16 17 N -0.83 -42.10 10.80 21.82 0.24 -41.86 16 18 Si 0.98 38.30 29.57 68.60 2.03 40.33 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 C -0.17 -8.57 8.61 22.48 0.19 -8.37 16 23 C -0.11 -4.81 9.89 22.14 0.22 -4.59 16 24 C 0.06 1.55 9.08 22.51 0.20 1.76 16 25 C -0.72 -15.20 5.88 22.33 0.13 -15.06 16 26 S 2.73 58.44 5.86 -56.49 -0.33 58.10 16 27 N -1.23 -13.87 9.55 37.02 0.35 -13.51 16 28 O -0.98 -25.93 17.29 -122.85 -2.12 -28.05 16 29 O -1.00 -29.58 16.96 -128.00 -2.17 -31.75 16 30 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.09 -0.16 7.65 -2.39 -0.02 -0.18 16 32 H 0.08 0.06 7.65 -2.39 -0.02 0.05 16 33 H 0.19 0.36 6.28 -2.91 -0.02 0.35 16 34 H 0.17 1.45 6.41 -2.91 -0.02 1.43 16 35 H 0.42 9.37 6.85 -92.71 -0.64 8.74 16 36 H 0.10 4.92 6.43 -2.91 -0.02 4.90 16 37 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 39 H 0.12 6.08 6.16 -2.91 -0.02 6.06 16 40 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 41 H 0.14 4.38 6.91 -2.91 -0.02 4.36 16 42 H 0.43 2.71 8.92 -96.74 -0.86 1.85 16 43 H 0.43 3.12 8.96 -96.74 -0.87 2.25 16 Total: -1.00 -85.04 378.78 -1.50 -86.54 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -1.23 Total: 27.66 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 4.15 Total: -44.76 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.02 Total: -77.68 kcal Atomic # 8 Polarization: -85.09 SS G_CDS: -5.10 Total: -90.19 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: 58.44 SS G_CDS: -0.33 Total: 58.10 kcal Total: -85.04 -1.50 -86.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029704045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.571 kcal (2) G-P(sol) polarization free energy of solvation -85.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds