Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46967 * 90.02364 * 5 4 3 7 7 H 1.08000 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99597 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00570 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47449 * 89.99795 * 10 8 6 12 12 H 1.48506 * 109.47145 * 210.00035 * 10 8 6 13 13 H 1.48507 * 109.46917 * 329.99631 * 10 8 6 14 14 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 15 15 C 1.50700 * 126.12519 * 180.23853 * 14 4 3 16 16 C 1.35306 * 107.74429 * 0.39166 * 14 4 3 17 17 C 1.50706 * 126.04096 * 179.87280 * 16 14 4 18 18 C 1.52999 * 109.47090 * 269.71662 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.40095 * 119.99917 * 179.97438 * 21 19 18 23 23 C 1.39674 * 120.00033 * 180.02562 * 22 21 19 24 24 C 1.38935 * 120.06616 * 359.72717 * 23 22 21 25 25 C 1.38094 * 119.94938 * 179.71866 * 24 23 22 26 26 C 1.38295 * 120.08640 * 0.55726 * 25 24 23 27 27 C 1.38382 * 120.13402 * 359.71527 * 26 25 24 28 28 Cl 1.73596 * 119.97516 * 180.02562 * 27 26 25 29 29 C 1.38238 * 120.05070 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 31 31 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 32 32 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 33 33 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 34 34 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 35 35 H 0.97002 * 119.99849 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46893 * 270.17807 * 15 14 4 37 37 H 1.08998 * 109.47339 * 30.17681 * 15 14 4 38 38 H 1.09001 * 109.47172 * 150.18283 * 15 14 4 39 39 H 1.08994 * 109.46790 * 29.71060 * 17 16 14 40 40 H 1.08997 * 109.47305 * 149.71501 * 17 16 14 41 41 H 1.09011 * 109.46854 * 299.99717 * 18 17 16 42 42 H 1.09005 * 109.47366 * 59.99142 * 18 17 16 43 43 H 0.96993 * 120.00067 * 0.02562 * 21 19 18 44 44 H 0.97006 * 120.00226 * 359.97438 * 22 21 19 45 45 H 1.07997 * 120.02958 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.95792 * 180.27410 * 25 24 23 47 47 H 1.07993 * 119.93193 * 179.74486 * 26 25 24 48 48 H 1.08000 * 120.04699 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1955 1.7964 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5985 1.6730 9 7 6.9769 3.1051 0.6736 10 14 6.7916 2.9644 3.4343 11 1 7.7537 1.9330 3.8987 12 1 7.4316 4.3030 3.4983 13 1 5.5894 2.9484 4.3061 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3272 -1.1330 -0.0006 17 6 1.8598 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2335 -4.4833 -1.4426 20 8 1.0457 -5.0597 -0.3921 21 7 1.0237 -5.1238 -2.6097 22 7 0.5892 -6.4557 -2.6095 23 6 0.3723 -7.1198 -3.8190 24 6 0.5816 -6.4590 -5.0231 25 6 0.3720 -7.1196 -6.2176 26 6 -0.0570 -8.4343 -6.2167 27 6 -0.2719 -9.0941 -5.0194 28 17 -0.8097 -10.7447 -5.0231 29 6 -0.0587 -8.4399 -3.8205 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 5.6091 0.9987 -0.5149 34 1 4.5561 2.4338 -0.5130 35 1 7.7454 3.6696 0.8511 36 1 5.1337 -1.8132 -1.0153 37 1 5.6489 -1.0904 0.5276 38 1 4.6053 -2.5323 0.5248 39 1 2.5934 -3.1871 0.5132 40 1 0.9012 -2.6352 0.5136 41 1 0.9677 -2.4294 -1.9565 42 1 2.6601 -2.9812 -1.9569 43 1 1.1742 -4.6630 -3.4498 44 1 0.4398 -6.9171 -1.7694 45 1 0.9119 -5.4307 -5.0251 46 1 0.5388 -6.6074 -7.1536 47 1 -0.2240 -8.9473 -7.1522 48 1 -0.2261 -8.9550 -2.8861 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030615989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = 74.442660 kcal Electronic energy + Delta-G solvation = -30004.974740 eV Core-core repulsion = 25701.897863 eV Total energy + Delta-G solvation = -4303.076877 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.75059 -40.41549 -39.45845 -37.11364 -36.10359 -34.48423 -33.51798 -32.60292 -32.52726 -31.14105 -30.39279 -29.03427 -28.65478 -26.67141 -25.92981 -24.14725 -23.45010 -22.55326 -22.09455 -20.91388 -18.91640 -18.78877 -18.70909 -17.82381 -16.83255 -16.71120 -16.42591 -15.96066 -15.49442 -15.37793 -14.87297 -14.61488 -14.43095 -14.38739 -14.14916 -14.05722 -13.78575 -13.15917 -13.00102 -12.90190 -12.58798 -12.57446 -12.36049 -12.28674 -12.24722 -11.93521 -11.91278 -11.67959 -11.52215 -11.41258 -11.36640 -11.30286 -10.99619 -10.86140 -10.82639 -10.32913 -10.25713 -9.82952 -9.77407 -9.67223 -9.28402 -8.68519 -8.23893 -7.74228 -7.55671 -6.30275 -4.37892 0.70696 0.94955 1.39803 1.82002 2.32585 2.70629 3.18185 3.22622 3.25047 3.28529 3.30209 3.55724 3.77726 4.26388 4.33580 4.38711 4.55945 4.69885 4.92943 5.02302 5.05122 5.06825 5.10103 5.23422 5.26681 5.30384 5.56542 5.60655 5.62774 5.77183 5.80269 5.85237 5.91371 5.93016 5.95036 5.96142 6.06863 6.17906 6.28772 6.39523 6.42058 6.47167 6.81381 6.88989 6.96856 7.06120 7.26398 7.45312 7.62461 7.84134 7.96816 8.00303 8.61548 8.71106 9.28964 10.77234 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.001352 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.429142 B =20706.259623 C =20929.325303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.096 3.904 15 C -0.092 4.092 16 C -0.271 4.271 17 C -0.009 4.009 18 C -0.123 4.123 19 C 0.514 3.486 20 O -0.536 6.536 21 N -0.530 5.530 22 N -0.540 5.540 23 C 0.234 3.766 24 C -0.199 4.199 25 C -0.051 4.051 26 C -0.171 4.171 27 C 0.021 3.979 28 Cl -0.069 7.069 29 C -0.186 4.186 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.422 0.578 44 H 0.435 0.565 45 H 0.124 0.876 46 H 0.134 0.866 47 H 0.131 0.869 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 -22.693 -14.489 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.119 5.119 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.576 4.576 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.197 1.197 14 C -0.036 4.036 15 C -0.151 4.151 16 C -0.284 4.284 17 C -0.048 4.048 18 C -0.164 4.164 19 C 0.301 3.699 20 O -0.411 6.411 21 N -0.278 5.278 22 N -0.265 5.265 23 C 0.129 3.871 24 C -0.222 4.222 25 C -0.070 4.070 26 C -0.192 4.192 27 C -0.007 4.007 28 Cl -0.040 7.040 29 C -0.211 4.211 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.264 0.736 44 H 0.279 0.721 45 H 0.142 0.858 46 H 0.152 0.848 47 H 0.149 0.851 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.141 -21.496 -13.737 28.696 hybrid contribution 0.437 -0.579 0.813 1.089 sum -12.704 -22.075 -12.925 28.561 Atomic orbital electron populations 1.20026 0.88023 1.02069 1.02191 1.21957 0.96119 0.90748 1.02518 1.77283 0.87528 1.22646 1.24477 1.49271 1.05778 1.04194 1.51113 1.19665 0.77915 0.89601 0.98933 1.21314 1.13088 1.31842 0.91354 0.91783 1.24926 0.95714 0.94949 0.98139 1.69919 1.19003 1.32924 1.31053 0.86359 0.78823 0.77827 0.83724 1.20289 1.20826 1.19661 1.20777 0.96096 0.85706 1.00989 1.20415 0.94460 0.97825 1.02361 1.19290 0.91412 0.94864 1.22797 1.19393 1.01875 0.91087 0.92481 1.21743 1.03391 0.89091 1.02199 1.21437 0.77105 0.89348 0.81988 1.90729 1.51417 1.68146 1.30789 1.45186 1.69539 1.02525 1.10546 1.43369 1.73941 1.02332 1.06811 1.17519 0.93919 0.90583 0.85089 1.20562 1.09739 1.00786 0.91111 1.20847 0.95067 0.93415 0.97701 1.20845 1.06110 0.95532 0.96750 1.20518 0.99792 0.85983 0.94358 1.98384 1.88410 1.18241 1.98944 1.20214 1.09500 0.93371 0.97992 0.91352 0.91582 0.91471 0.93066 0.93020 0.92233 0.91222 0.89914 0.90664 0.91167 0.91079 0.88380 0.88383 0.73619 0.72135 0.85840 0.84796 0.85072 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.12 36.01 0.36 -0.50 16 2 C 0.05 0.92 7.22 -82.40 -0.59 0.33 16 3 N -0.30 -6.56 12.58 33.67 0.42 -6.14 16 4 N -0.32 -7.30 3.60 -58.31 -0.21 -7.51 16 5 C 0.26 6.42 5.81 -5.19 -0.03 6.39 16 6 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 7 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 10 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.10 1.81 6.93 -82.27 -0.57 1.24 16 15 C -0.09 -1.43 9.68 36.01 0.35 -1.08 16 16 C -0.27 -4.53 5.35 -105.05 -0.56 -5.09 16 17 C -0.01 -0.12 4.45 -27.88 -0.12 -0.24 16 18 C -0.12 -1.17 5.68 -27.89 -0.16 -1.33 16 19 C 0.51 5.19 7.95 -10.98 -0.09 5.10 16 20 O -0.54 -7.37 15.82 5.56 0.09 -7.28 16 21 N -0.53 -4.08 6.22 31.22 0.19 -3.88 16 22 N -0.54 -4.35 6.45 32.41 0.21 -4.14 16 23 C 0.23 1.74 6.72 -83.79 -0.56 1.17 16 24 C -0.20 -1.25 9.48 -39.38 -0.37 -1.62 16 25 C -0.05 -0.29 10.04 -39.61 -0.40 -0.69 16 26 C -0.17 -1.09 9.83 -39.51 -0.39 -1.48 16 27 C 0.02 0.15 6.32 -39.53 -0.25 -0.10 16 28 Cl -0.07 -0.49 28.95 -51.86 -1.50 -2.00 16 29 C -0.19 -1.37 9.68 -39.35 -0.38 -1.75 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 33 H 0.05 1.26 7.68 -51.93 -0.40 0.87 16 34 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.44 7.74 -51.93 -0.40 1.04 16 38 H 0.07 1.00 7.14 -51.93 -0.37 0.63 16 39 H 0.07 0.94 7.10 -51.93 -0.37 0.58 16 40 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 41 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.42 2.14 6.60 -182.61 -1.21 0.94 16 44 H 0.44 3.66 8.01 -182.60 -1.46 2.20 16 45 H 0.12 0.55 6.20 -52.49 -0.33 0.23 16 46 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 423.26 15.07 6.38 6.38 Total: -1.00 -32.59 423.26 -11.59 -44.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.70 Total: 1.35 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -4.19 Total: -12.88 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 1.35 Total: -45.66 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.59 -11.59 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030615989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.624 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds