Wall clock time and date at job start Tue Mar 31 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46967 * 90.02364 * 5 4 3 7 7 H 1.08000 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99597 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00570 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47449 * 89.99795 * 10 8 6 12 12 H 1.48506 * 109.47145 * 210.00035 * 10 8 6 13 13 H 1.48507 * 109.46917 * 329.99631 * 10 8 6 14 14 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 15 15 C 1.50700 * 126.12519 * 180.23853 * 14 4 3 16 16 C 1.35306 * 107.74429 * 0.39166 * 14 4 3 17 17 C 1.50706 * 126.04096 * 179.87280 * 16 14 4 18 18 C 1.52999 * 109.47090 * 269.71662 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.40095 * 119.99917 * 179.97438 * 21 19 18 23 23 C 1.39674 * 120.00033 * 180.02562 * 22 21 19 24 24 C 1.38935 * 120.06616 * 359.72717 * 23 22 21 25 25 C 1.38094 * 119.94938 * 179.71866 * 24 23 22 26 26 C 1.38295 * 120.08640 * 0.55726 * 25 24 23 27 27 C 1.38382 * 120.13402 * 359.71527 * 26 25 24 28 28 Cl 1.73596 * 119.97516 * 180.02562 * 27 26 25 29 29 C 1.38238 * 120.05070 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 31 31 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 32 32 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 33 33 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 34 34 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 35 35 H 0.97002 * 119.99849 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46893 * 270.17807 * 15 14 4 37 37 H 1.08998 * 109.47339 * 30.17681 * 15 14 4 38 38 H 1.09001 * 109.47172 * 150.18283 * 15 14 4 39 39 H 1.08994 * 109.46790 * 29.71060 * 17 16 14 40 40 H 1.08997 * 109.47305 * 149.71501 * 17 16 14 41 41 H 1.09011 * 109.46854 * 299.99717 * 18 17 16 42 42 H 1.09005 * 109.47366 * 59.99142 * 18 17 16 43 43 H 0.96993 * 120.00067 * 0.02562 * 21 19 18 44 44 H 0.97006 * 120.00226 * 359.97438 * 22 21 19 45 45 H 1.07997 * 120.02958 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.95792 * 180.27410 * 25 24 23 47 47 H 1.07993 * 119.93193 * 179.74486 * 26 25 24 48 48 H 1.08000 * 120.04699 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1955 1.7964 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5985 1.6730 9 7 6.9769 3.1051 0.6736 10 14 6.7916 2.9644 3.4343 11 1 7.7537 1.9330 3.8987 12 1 7.4316 4.3030 3.4983 13 1 5.5894 2.9484 4.3061 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3272 -1.1330 -0.0006 17 6 1.8598 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2335 -4.4833 -1.4426 20 8 1.0457 -5.0597 -0.3921 21 7 1.0237 -5.1238 -2.6097 22 7 0.5892 -6.4557 -2.6095 23 6 0.3723 -7.1198 -3.8190 24 6 0.5816 -6.4590 -5.0231 25 6 0.3720 -7.1196 -6.2176 26 6 -0.0570 -8.4343 -6.2167 27 6 -0.2719 -9.0941 -5.0194 28 17 -0.8097 -10.7447 -5.0231 29 6 -0.0587 -8.4399 -3.8205 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 5.6091 0.9987 -0.5149 34 1 4.5561 2.4338 -0.5130 35 1 7.7454 3.6696 0.8511 36 1 5.1337 -1.8132 -1.0153 37 1 5.6489 -1.0904 0.5276 38 1 4.6053 -2.5323 0.5248 39 1 2.5934 -3.1871 0.5132 40 1 0.9012 -2.6352 0.5136 41 1 0.9677 -2.4294 -1.9565 42 1 2.6601 -2.9812 -1.9569 43 1 1.1742 -4.6630 -3.4498 44 1 0.4398 -6.9171 -1.7694 45 1 0.9119 -5.4307 -5.0251 46 1 0.5388 -6.6074 -7.1536 47 1 -0.2240 -8.9473 -7.1522 48 1 -0.2261 -8.9550 -2.8861 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030615989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:52 Heat of formation + Delta-G solvation = 56.006389 kcal Electronic energy + Delta-G solvation = -30005.774197 eV Core-core repulsion = 25701.897863 eV Total energy + Delta-G solvation = -4303.876334 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.14302 -41.13694 -40.09273 -37.68006 -36.72821 -36.07210 -34.87733 -34.17290 -33.28631 -31.79394 -31.50345 -30.49394 -29.34096 -27.85124 -27.59677 -25.38323 -24.19872 -23.76342 -22.86560 -21.64808 -20.30252 -20.13656 -19.36979 -18.81837 -18.54733 -17.45831 -17.21412 -16.92696 -16.68537 -16.24445 -16.03692 -15.86966 -15.42063 -15.13568 -15.03356 -14.68753 -14.60991 -14.55286 -14.41072 -14.05661 -13.98660 -13.62012 -13.44326 -13.29397 -13.21942 -13.16951 -12.86294 -12.75043 -12.74217 -12.61841 -12.56469 -12.40208 -12.22297 -12.09429 -11.88145 -11.86850 -11.71252 -11.19617 -11.05357 -10.74896 -10.40196 -9.81907 -9.78469 -9.02358 -8.35030 -8.31575 -6.52679 0.21638 0.45208 0.80492 1.19555 1.28022 1.35209 1.36768 1.47791 1.58065 1.95167 1.97113 2.32927 2.74053 2.94476 3.12716 3.71789 3.89553 3.90283 3.96322 4.07741 4.23277 4.23977 4.26055 4.34287 4.46458 4.57762 4.61975 4.68341 4.74467 4.77314 4.81293 4.83479 4.87252 4.89443 4.97725 5.07615 5.12265 5.17294 5.33081 5.33865 5.45111 5.46701 5.50623 5.55033 5.58376 5.80695 5.86891 6.07118 6.27294 6.33437 6.63176 6.66011 7.14013 7.18959 7.29966 8.70710 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.001352 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.429142 B =20706.259623 C =20929.325303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.554 4.554 7 H 0.046 0.954 8 C 0.024 3.976 9 N -0.917 5.917 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.277 1.277 14 C 0.080 3.920 15 C -0.088 4.088 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.114 4.114 19 C 0.518 3.482 20 O -0.577 6.577 21 N -0.515 5.515 22 N -0.547 5.547 23 C 0.222 3.778 24 C -0.201 4.201 25 C -0.051 4.051 26 C -0.175 4.175 27 C 0.007 3.993 28 Cl -0.074 7.074 29 C -0.196 4.196 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.273 0.727 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.435 0.565 44 H 0.432 0.568 45 H 0.143 0.857 46 H 0.161 0.839 47 H 0.144 0.856 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 -23.994 -15.434 31.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.793 3.207 11 H -0.189 1.189 12 H -0.198 1.198 13 H -0.202 1.202 14 C -0.050 4.050 15 C -0.146 4.146 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.155 4.155 19 C 0.306 3.694 20 O -0.455 6.455 21 N -0.263 5.263 22 N -0.272 5.272 23 C 0.118 3.882 24 C -0.224 4.224 25 C -0.070 4.070 26 C -0.196 4.196 27 C -0.020 4.020 28 Cl -0.045 7.045 29 C -0.220 4.220 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.280 0.720 44 H 0.274 0.726 45 H 0.161 0.839 46 H 0.178 0.822 47 H 0.162 0.838 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.835 -22.825 -14.748 30.494 hybrid contribution 0.545 -0.267 1.011 1.179 sum -13.290 -23.092 -13.737 29.976 Atomic orbital electron populations 1.20215 0.84713 1.03952 1.03280 1.22796 0.98101 0.90224 0.99929 1.77217 0.87854 1.25109 1.27246 1.48998 1.05274 1.05177 1.54098 1.19113 0.79063 0.88827 0.97385 1.21447 1.13430 1.32430 0.91941 0.93539 1.25714 0.95470 0.94457 1.02117 1.69998 1.19367 1.33223 1.32928 0.85393 0.78333 0.78251 0.78744 1.18902 1.19828 1.20220 1.21466 0.98230 0.84640 1.00635 1.20495 0.92358 0.97775 1.03979 1.19660 0.90256 0.96399 1.20570 1.19368 1.01591 0.88371 0.94989 1.21608 1.04965 0.88964 0.99994 1.21374 0.76735 0.89385 0.81871 1.90724 1.53485 1.68996 1.32298 1.44979 1.68242 1.02469 1.10598 1.43416 1.74490 1.02336 1.06966 1.17643 0.94588 0.90688 0.85275 1.20875 1.09019 1.01711 0.90812 1.21181 0.94063 0.93099 0.98624 1.21119 1.05508 0.96030 0.96905 1.20672 1.00545 0.85982 0.94842 1.98379 1.88515 1.18628 1.98961 1.20321 1.09724 0.93692 0.98262 0.90533 0.91184 0.88120 0.93446 0.96271 0.91749 0.88680 0.92480 0.88221 0.91570 0.90915 0.86315 0.86815 0.71998 0.72573 0.83930 0.82188 0.83845 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.55 10.12 71.24 0.72 -0.83 16 2 C 0.05 1.92 7.22 43.10 0.31 2.23 16 3 N -0.35 -15.91 12.58 -47.38 -0.60 -16.50 16 4 N -0.36 -16.50 3.60 -338.40 -1.22 -17.71 16 5 C 0.28 14.46 5.81 85.63 0.50 14.96 16 6 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.29 5.46 84.65 0.46 1.75 16 9 N -0.92 -51.77 13.29 21.45 0.28 -51.48 16 10 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.08 3.00 6.93 41.40 0.29 3.28 16 15 C -0.09 -2.66 9.68 71.24 0.69 -1.97 16 16 C -0.26 -8.22 5.35 -20.14 -0.11 -8.33 16 17 C 0.00 -0.10 4.45 29.85 0.13 0.04 16 18 C -0.11 -1.80 5.68 29.85 0.17 -1.63 16 19 C 0.52 9.17 7.95 87.65 0.70 9.86 16 20 O -0.58 -14.95 15.82 -3.03 -0.05 -15.00 16 21 N -0.51 -6.56 6.22 -173.53 -1.08 -7.64 16 22 N -0.55 -7.91 6.45 -51.38 -0.33 -8.24 16 23 C 0.22 2.92 6.72 38.21 0.26 3.18 16 24 C -0.20 -1.99 9.48 22.40 0.21 -1.77 16 25 C -0.05 -0.43 10.04 22.25 0.22 -0.21 16 26 C -0.17 -1.89 9.83 22.32 0.22 -1.67 16 27 C 0.01 0.10 6.32 22.30 0.14 0.24 16 28 Cl -0.07 -1.01 28.95 -2.72 -0.08 -1.09 16 29 C -0.20 -2.70 9.68 22.42 0.22 -2.49 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.78 7.92 -2.39 -0.02 1.76 16 33 H 0.05 2.46 7.68 -2.39 -0.02 2.44 16 34 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.02 7.74 -2.39 -0.02 2.00 16 38 H 0.10 2.47 7.14 -2.39 -0.02 2.46 16 39 H 0.07 1.64 7.10 -2.39 -0.02 1.62 16 40 H 0.07 1.72 7.88 -2.39 -0.02 1.70 16 41 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.44 2.94 6.60 -213.33 -1.41 1.53 16 44 H 0.43 6.91 8.01 -213.32 -1.71 5.20 16 45 H 0.14 0.76 6.20 -2.91 -0.02 0.75 16 46 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 47 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 48 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -73.51 423.26 2.23 -71.28 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -2.10 Total: 15.44 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.37 Total: -14.31 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -2.94 Total: -101.58 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.05 Total: -15.00 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -73.51 2.23 -71.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030615989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.289 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds