Wall clock time and date at job start Tue Mar 31 2020 05:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48495 * 109.47275 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.46901 * 29.99872 * 3 2 1 6 6 H 1.48500 * 109.47250 * 149.99796 * 3 2 1 7 7 C 1.38896 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 O 1.34790 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.34717 * 116.99764 * 179.97438 * 9 7 2 11 11 O 1.21510 * 120.00308 * 0.02562 * 10 9 7 12 12 C 1.47663 * 119.99577 * 179.97438 * 10 9 7 13 13 C 1.46402 * 121.19103 * 270.00231 * 12 10 9 14 14 C 1.39801 * 121.53421 * 359.97438 * 13 12 10 15 15 C 1.36424 * 119.62636 * 179.87293 * 14 13 12 16 16 C 1.39276 * 120.80660 * 359.97438 * 15 14 13 17 17 C 1.36130 * 121.06957 * 0.31996 * 16 15 14 18 18 C 1.40740 * 119.71615 * 359.48851 * 17 16 15 19 19 N 1.33267 * 121.10516 * 180.13247 * 18 17 16 20 20 C 1.32429 * 122.62835 * 180.27100 * 19 18 17 21 21 C 1.38938 * 121.18271 * 90.02926 * 12 10 9 22 22 C 1.50352 * 118.81756 * 359.67663 * 21 12 10 23 23 C 1.52631 * 111.26258 * 157.62977 * 22 21 12 24 24 C 1.53403 * 109.27905 * 54.37621 * 23 22 21 25 25 C 1.47733 * 118.66484 * 179.48552 * 20 19 18 26 26 C 1.34994 * 121.11693 * 348.22229 * 25 20 19 27 27 C 1.46295 * 120.00250 * 172.33431 * 26 25 20 28 28 C 1.36702 * 125.99418 * 173.56737 * 27 26 25 29 29 C 1.40555 * 106.69856 * 179.85246 * 28 27 26 30 30 C 1.34990 * 107.11959 * 0.41071 * 29 28 27 31 31 O 1.34228 * 108.78439 * 359.74273 * 30 29 28 32 32 H 0.97007 * 120.00106 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.18741 * 359.84388 * 14 13 12 34 34 H 1.08003 * 119.59971 * 180.02562 * 15 14 13 35 35 H 1.08008 * 119.46203 * 180.02562 * 16 15 14 36 36 H 1.07996 * 120.14218 * 179.72701 * 17 16 15 37 37 H 1.09002 * 109.11540 * 278.08225 * 22 21 12 38 38 H 1.08995 * 109.12126 * 37.16905 * 22 21 12 39 39 H 1.09002 * 109.49862 * 174.31981 * 23 22 21 40 40 H 1.09001 * 109.50152 * 294.39575 * 23 22 21 41 41 H 1.09002 * 109.85212 * 55.21887 * 24 23 22 42 42 H 1.09002 * 109.84840 * 176.21034 * 24 23 22 43 43 H 1.08006 * 119.99670 * 352.33450 * 26 25 20 44 44 H 1.08003 * 126.64622 * 359.96894 * 28 27 26 45 45 H 1.07997 * 126.43790 * 180.15461 * 29 28 27 46 46 H 1.08001 * 125.60723 * 179.76560 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0464 -1.4000 5 1 1.4450 2.6527 0.7000 6 1 3.5451 1.4402 0.7001 7 6 2.0081 -1.2029 0.0005 8 1 3.0881 -1.2029 0.0001 9 8 1.3341 -2.3702 0.0005 10 6 2.0679 -3.5000 0.0005 11 8 3.2813 -3.4364 0.0010 12 6 1.3975 -4.8157 0.0011 13 6 1.0537 -5.4909 1.2538 14 6 1.3454 -4.9200 2.4961 15 6 1.0052 -5.5823 3.6393 16 6 0.3700 -6.8205 3.5841 17 6 0.0768 -7.4072 2.3912 18 6 0.4091 -6.7516 1.1910 19 7 0.1326 -7.2993 0.0079 20 6 0.4363 -6.7118 -1.1394 21 6 1.0710 -5.4572 -1.1873 22 6 1.4057 -4.7846 -2.4896 23 6 1.4986 -5.7974 -3.6277 24 6 0.2006 -6.6129 -3.6872 25 6 0.0995 -7.4034 -2.4006 26 6 -0.2854 -8.6973 -2.4055 27 6 -0.7734 -9.3107 -3.6407 28 6 -1.0759 -10.6322 -3.8165 29 6 -1.5072 -10.7743 -5.1466 30 6 -1.4411 -9.5533 -5.7184 31 8 -0.9981 -8.6728 -4.8073 32 1 -0.4850 0.8401 -0.0004 33 1 1.8378 -3.9603 2.5506 34 1 1.2304 -5.1406 4.5988 35 1 0.1101 -7.3256 4.5027 36 1 -0.4121 -8.3698 2.3659 37 1 0.6310 -4.0545 -2.7238 38 1 2.3616 -4.2703 -2.3905 39 1 1.6417 -5.2717 -4.5718 40 1 2.3414 -6.4659 -3.4521 41 1 -0.6541 -5.9424 -3.7771 42 1 0.2295 -7.2931 -4.5384 43 1 -0.2330 -9.2796 -1.4974 44 1 -1.0002 -11.4148 -3.0761 45 1 -1.8270 -11.6893 -5.6230 46 1 -1.7021 -9.3228 -6.7408 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032636461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:11 Heat of formation + Delta-G solvation = 3.328266 kcal Electronic energy + Delta-G solvation = -33179.195572 eV Core-core repulsion = 28772.767858 eV Total energy + Delta-G solvation = -4406.427714 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.130 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.64532 -40.79995 -38.93141 -38.25128 -35.52587 -35.41246 -34.21766 -33.23738 -32.41813 -32.18265 -30.32744 -30.09049 -28.58116 -26.27100 -25.94860 -24.69891 -23.47271 -22.86971 -21.90238 -21.57807 -20.61331 -20.43903 -19.26848 -17.91274 -17.84006 -17.32173 -16.84802 -16.55682 -16.19275 -15.68012 -15.03374 -14.87776 -14.74308 -14.52911 -14.41074 -14.32384 -14.11227 -13.96778 -13.62753 -13.35101 -13.19344 -12.94244 -12.83292 -12.61227 -12.47481 -12.33539 -12.02651 -11.74450 -11.68757 -11.52725 -11.29715 -11.09301 -10.78707 -10.59634 -10.54008 -10.51369 -10.37279 -10.17972 -9.88721 -9.80591 -9.68412 -9.10993 -8.71533 -8.71252 -8.06927 -7.62992 -6.54215 -4.22409 0.11874 0.74437 1.26178 2.02507 2.16146 2.72949 2.82152 2.94457 3.11760 3.17416 3.23289 3.26015 3.75208 4.01993 4.21291 4.23907 4.47203 4.65812 4.74510 4.78776 4.85096 4.90071 4.93477 5.01906 5.06287 5.11203 5.17457 5.30796 5.36372 5.51327 5.56399 5.57880 5.61857 5.65151 5.72108 5.84234 5.89463 6.02826 6.04821 6.10332 6.13650 6.26523 6.27089 6.34755 6.38578 6.42801 6.48000 6.55571 6.62944 6.72681 6.94218 7.00929 7.25470 7.77773 7.96586 8.47479 8.92801 9.65442 10.62436 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.002861 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.209217 B = 9782.903980 C =12115.537518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.388 4.388 8 H 0.099 0.901 9 O -0.196 6.196 10 C 0.437 3.563 11 O -0.537 6.537 12 C -0.012 4.012 13 C -0.071 4.071 14 C -0.082 4.082 15 C -0.117 4.117 16 C -0.103 4.103 17 C -0.095 4.095 18 C 0.130 3.870 19 N -0.469 5.469 20 C 0.202 3.798 21 C -0.085 4.085 22 C -0.088 4.088 23 C -0.112 4.112 24 C -0.091 4.091 25 C -0.054 4.054 26 C -0.057 4.057 27 C 0.024 3.976 28 C -0.194 4.194 29 C -0.213 4.213 30 C -0.045 4.045 31 O -0.163 6.163 32 H 0.272 0.728 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 -17.943 -5.045 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.117 0.883 9 O -0.102 6.102 10 C 0.284 3.716 11 O -0.435 6.435 12 C -0.021 4.021 13 C -0.073 4.073 14 C -0.100 4.100 15 C -0.135 4.135 16 C -0.123 4.123 17 C -0.113 4.113 18 C 0.008 3.992 19 N -0.178 5.178 20 C 0.051 3.949 21 C -0.088 4.088 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.128 4.128 25 C -0.055 4.055 26 C -0.077 4.077 27 C -0.026 4.026 28 C -0.213 4.213 29 C -0.232 4.232 30 C -0.113 4.113 31 O -0.059 6.059 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.174 0.826 44 H 0.168 0.832 45 H 0.165 0.835 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.639 -18.211 -4.924 19.213 hybrid contribution 0.687 1.424 0.131 1.586 sum -2.952 -16.787 -4.793 17.706 Atomic orbital electron populations 1.69966 1.06126 1.28074 1.44896 1.25400 0.95805 0.98915 0.95796 0.85661 0.79121 0.79455 0.78935 1.19666 1.20169 1.18917 1.21311 0.92546 0.79490 1.52990 0.88349 1.84005 1.38915 1.12998 1.74259 1.20335 0.85908 0.84974 0.80405 1.90705 1.14405 1.87399 1.50974 1.20703 0.95904 0.93126 0.92356 1.19650 0.99443 0.95265 0.92969 1.21026 0.98001 0.99943 0.91078 1.20952 0.98889 0.95198 0.98466 1.20862 0.98222 0.95437 0.97752 1.20718 1.00523 1.00169 0.89910 1.18552 0.97398 0.91310 0.91899 1.67631 1.18629 1.34484 0.97017 1.19624 0.93842 0.90297 0.91144 1.20812 0.97893 0.94832 0.95221 1.20480 1.03816 0.97982 0.90233 1.21509 0.97372 0.97524 0.98510 1.21169 0.98809 0.98861 0.93951 1.20985 0.98462 0.93785 0.92283 1.21155 0.99178 0.94489 0.92896 1.20758 1.04994 0.91003 0.85815 1.21918 1.06003 0.95647 0.97734 1.21721 1.07435 0.98775 0.95317 1.24252 1.03420 0.88388 0.95267 1.84313 1.64727 1.37782 1.19096 0.91757 0.84904 0.85318 0.85310 0.84712 0.89022 0.89497 0.90339 0.91418 0.89736 0.88671 0.82570 0.83221 0.83493 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.44 13.67 55.49 0.76 -23.68 16 2 C 0.05 1.27 5.50 -17.51 -0.10 1.18 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -11.12 9.65 30.98 0.30 -10.83 16 8 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 9 O -0.20 -5.56 9.75 -21.42 -0.21 -5.77 16 10 C 0.44 11.06 4.84 34.58 0.17 11.23 16 11 O -0.54 -14.54 16.35 -19.28 -0.32 -14.85 16 12 C -0.01 -0.26 5.96 -102.51 -0.61 -0.87 16 13 C -0.07 -1.40 5.90 -104.70 -0.62 -2.02 16 14 C -0.08 -1.49 9.47 -39.65 -0.38 -1.87 16 15 C -0.12 -1.67 9.97 -39.85 -0.40 -2.06 16 16 C -0.10 -1.29 9.94 -39.95 -0.40 -1.68 16 17 C -0.09 -1.32 9.99 -39.39 -0.39 -1.72 16 18 C 0.13 2.27 6.62 -84.97 -0.56 1.71 16 19 N -0.47 -8.03 9.35 -7.56 -0.07 -8.10 16 20 C 0.20 3.44 6.68 -82.81 -0.55 2.89 16 21 C -0.09 -1.62 5.83 -103.61 -0.60 -2.22 16 22 C -0.09 -1.50 5.19 -28.24 -0.15 -1.64 16 23 C -0.11 -1.47 5.91 -26.71 -0.16 -1.62 16 24 C -0.09 -1.15 5.26 -27.36 -0.14 -1.29 16 25 C -0.05 -0.77 5.68 -101.58 -0.58 -1.34 16 26 C -0.06 -0.71 9.60 -37.50 -0.36 -1.07 16 27 C 0.02 0.28 6.76 -36.90 -0.25 0.03 16 28 C -0.19 -1.96 10.86 -39.26 -0.43 -2.38 16 29 C -0.21 -1.86 10.88 -39.86 -0.43 -2.30 16 30 C -0.05 -0.39 12.08 29.58 0.36 -0.03 16 31 O -0.16 -1.81 7.36 4.40 0.03 -1.78 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.13 2.61 7.34 -52.49 -0.39 2.23 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.09 1.63 7.27 -51.93 -0.38 1.26 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.10 1.09 5.05 -51.93 -0.26 0.83 16 43 H 0.16 1.85 7.59 -52.48 -0.40 1.46 16 44 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -33.84 393.22 -10.33 -44.17 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.15 Total: 6.42 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -6.28 Total: -17.92 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.69 Total: -31.78 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.49 Total: -22.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.84 -10.33 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032636461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.495 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds