Wall clock time and date at job start Tue Mar 31 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47138 * 2 1 4 4 S 1.80999 * 109.47449 * 120.00444 * 2 1 3 5 5 C 1.76205 * 99.99945 * 295.00281 * 4 2 1 6 6 N 1.31054 * 125.07504 * 0.02562 * 5 4 2 7 7 C 1.35877 * 109.61746 * 179.97438 * 6 5 4 8 8 C 1.39723 * 133.37310 * 180.02562 * 7 6 5 9 9 C 1.37695 * 119.77733 * 179.97438 * 8 7 6 10 10 C 1.38695 * 120.49292 * 0.02562 * 9 8 7 11 11 C 1.37978 * 120.43672 * 359.97438 * 10 9 8 12 12 C 1.38654 * 119.85030 * 0.02562 * 11 10 9 13 13 N 1.36629 * 125.08015 * 180.02562 * 5 4 2 14 14 C 1.46493 * 126.38381 * 359.97078 * 13 5 4 15 15 C 1.50704 * 109.47265 * 90.02724 * 14 13 5 16 16 H 1.08002 * 119.99914 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00188 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47366 * 119.99954 * 19 17 15 22 22 H 1.48503 * 109.47275 * 239.99873 * 19 17 15 23 23 C 1.50700 * 109.47205 * 240.00585 * 2 1 3 24 24 O 1.21288 * 119.99962 * 265.00081 * 23 2 1 25 25 N 1.34772 * 120.00092 * 84.99723 * 23 2 1 26 26 C 1.47147 * 120.98510 * 359.72197 * 25 23 2 27 27 C 1.53712 * 108.16419 * 129.42940 * 26 25 23 28 28 O 1.42963 * 109.14795 * 52.53994 * 27 26 25 29 29 C 1.42963 * 114.16277 * 297.28711 * 28 27 26 30 30 C 1.47160 * 120.98022 * 179.97438 * 25 23 2 31 31 H 1.09000 * 109.46897 * 299.99608 * 1 2 3 32 32 H 1.09005 * 109.46814 * 59.99755 * 1 2 3 33 33 H 1.08995 * 109.46714 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.11630 * 359.97235 * 8 7 6 35 35 H 1.07997 * 119.75101 * 179.72342 * 9 8 7 36 36 H 1.08008 * 119.78023 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.07390 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47490 * 210.02486 * 14 13 5 39 39 H 1.08998 * 109.47420 * 330.02596 * 14 13 5 40 40 H 0.96999 * 120.00205 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.68247 * 249.21089 * 26 25 23 42 42 H 1.09000 * 109.67888 * 9.76371 * 26 25 23 43 43 H 1.09001 * 109.65779 * 292.57471 * 27 26 25 44 44 H 1.08999 * 109.48155 * 172.40177 * 27 26 25 45 45 H 1.09001 * 109.51432 * 302.65547 * 29 28 27 46 46 H 1.08999 * 109.55081 * 182.52803 * 29 28 27 47 47 H 1.08999 * 109.68193 * 350.24160 * 30 25 23 48 48 H 1.09004 * 109.67710 * 110.75145 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8533 1.4778 5 6 1.5440 0.2420 2.7257 6 7 0.8653 1.3410 2.5039 7 6 0.5707 1.9418 3.6865 8 6 -0.1176 3.1100 4.0241 9 6 -0.2550 3.4645 5.3475 10 6 0.2852 2.6708 6.3484 11 6 0.9677 1.5143 6.0316 12 6 1.1157 1.1420 4.7042 13 7 1.7262 0.0726 4.0692 14 6 2.4341 -1.0340 4.7174 15 6 3.8909 -0.6788 4.8682 16 1 4.2530 0.2761 4.5168 17 6 4.7613 -1.5727 5.4549 18 7 4.3202 -2.7353 5.8833 19 14 6.5671 -1.1326 5.6412 20 1 6.8065 0.2224 5.0828 21 1 6.9344 -1.1476 7.0800 22 1 7.3962 -2.1231 4.9084 23 6 2.0324 -0.7103 -1.2305 24 8 2.3208 -1.8871 -1.1762 25 7 2.1610 -0.0379 -2.3914 26 6 1.8116 1.3886 -2.4834 27 6 2.9911 2.1300 -3.1328 28 8 3.3350 1.4808 -4.3593 29 6 3.7831 0.1324 -4.2020 30 6 2.6500 -0.7099 -3.6059 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 -0.5403 3.7328 3.2497 35 1 -0.7833 4.3698 5.6077 36 1 0.1701 2.9596 7.3828 37 1 1.3863 0.9009 6.8157 38 1 2.0009 -1.2162 5.7009 39 1 2.3405 -1.9323 4.1072 40 1 4.9327 -3.3643 6.2957 41 1 0.9173 1.5088 -3.0949 42 1 1.6307 1.7873 -1.4852 43 1 3.8487 2.1151 -2.4602 44 1 2.7048 3.1621 -3.3350 45 1 4.6435 0.1103 -3.5333 46 1 4.0663 -0.2735 -5.1732 47 1 3.0244 -1.7014 -3.3513 48 1 1.8386 -0.7983 -4.3284 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032957485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:18 Heat of formation + Delta-G solvation = 3.364206 kcal Electronic energy + Delta-G solvation = -31955.325157 eV Core-core repulsion = 27716.635704 eV Total energy + Delta-G solvation = -4238.689453 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.34471 -40.61689 -38.55697 -36.76822 -35.10849 -34.29695 -33.31954 -32.34044 -31.51466 -29.89126 -28.90342 -28.15276 -27.24380 -25.07514 -24.21184 -23.43763 -23.16840 -22.17762 -21.53409 -20.13495 -19.53225 -17.84716 -17.30207 -16.90066 -16.65458 -16.50213 -16.10615 -16.05532 -15.70567 -15.44051 -15.16394 -14.79832 -14.62101 -14.51287 -14.21703 -13.81006 -13.59035 -13.52940 -13.35707 -12.80547 -12.59391 -12.52006 -12.29879 -12.17020 -11.99179 -11.85645 -11.72339 -11.57868 -11.49593 -11.24965 -11.08760 -10.96381 -10.89376 -10.53461 -10.36042 -10.23470 -10.05268 -9.89632 -9.50547 -9.35729 -8.90243 -8.72579 -8.61781 -7.55529 -7.03155 -6.33458 -4.42506 1.30789 1.36611 2.02641 2.18544 2.43548 2.65137 3.15117 3.16415 3.24839 3.29856 3.43942 3.63483 4.11763 4.23902 4.32734 4.34842 4.58629 4.68879 4.69638 4.87465 4.89876 4.91197 4.99003 5.01169 5.18638 5.24760 5.33092 5.37389 5.41350 5.41629 5.54874 5.55608 5.74146 5.81062 5.85344 5.91500 6.05398 6.08337 6.25109 6.36833 6.70117 6.72346 6.84262 6.90423 6.95758 7.00634 7.21468 7.32213 7.54809 7.74244 7.75802 7.85663 8.23237 8.62801 9.25376 10.74273 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.003227 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.675513 B = 8675.986534 C =10938.838781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.121 0.879 4 S 0.087 5.913 5 C 0.251 3.749 6 N -0.520 5.520 7 C 0.051 3.949 8 C -0.079 4.079 9 C -0.134 4.134 10 C -0.122 4.122 11 C -0.091 4.091 12 C 0.061 3.939 13 N -0.438 5.438 14 C 0.235 3.765 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.542 3.458 24 O -0.518 6.518 25 N -0.613 5.613 26 C 0.068 3.932 27 C 0.046 3.954 28 O -0.380 6.380 29 C 0.047 3.953 30 C 0.078 3.922 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.269 0.731 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 9.496 -14.569 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.252 4.252 3 H 0.139 0.861 4 S 0.318 5.682 5 C -0.123 4.123 6 N -0.246 5.246 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.111 4.111 12 C -0.053 4.053 13 N -0.124 5.124 14 C 0.117 3.883 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.204 1.204 23 C 0.329 3.671 24 O -0.393 6.393 25 N -0.349 5.349 26 C -0.055 4.055 27 C -0.032 4.032 28 O -0.298 6.298 29 C -0.030 4.030 30 C -0.044 4.044 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.077 0.923 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.323 7.846 -15.264 18.290 hybrid contribution 0.620 0.903 1.240 1.654 sum -5.703 8.748 -14.024 17.485 Atomic orbital electron populations 1.22050 0.89730 1.03680 1.04613 1.23493 1.02418 1.04423 0.94881 0.86144 1.86619 1.67261 1.24227 0.90056 1.25353 1.00535 0.98272 0.88121 1.70795 1.20818 1.07071 1.25933 1.19041 1.02395 0.96981 0.88719 1.20048 0.99473 0.94431 0.96025 1.20724 1.02323 1.00215 0.92190 1.20743 0.99724 0.94780 0.99018 1.20071 1.00461 0.97723 0.92888 1.18988 1.00370 0.90805 0.95109 1.45974 1.41767 1.20665 1.03974 1.19866 0.92145 0.82169 0.94097 1.21255 0.91605 1.03539 1.41533 0.91651 1.24903 0.99580 0.94490 0.94437 1.69920 1.35995 1.07409 1.39076 0.86321 0.83684 0.78858 0.78022 1.19502 1.20574 1.20426 1.19841 0.77090 0.86831 0.83378 1.90757 1.48981 1.15341 1.84210 1.47992 1.66407 1.10914 1.09584 1.22683 0.98814 0.80527 1.03523 1.23092 0.96540 0.96852 0.86695 1.87961 1.85862 1.26043 1.29952 1.23005 0.95518 0.82334 1.02171 1.22314 0.97782 0.98229 0.86122 0.88366 0.91957 0.91417 0.86247 0.86166 0.85975 0.85827 0.93119 0.92748 0.92152 0.89971 0.87993 0.92158 0.87342 0.92305 0.87456 0.87789 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.97 37.16 0.33 -1.50 16 2 C -0.12 -1.72 1.84 -27.88 -0.05 -1.78 16 3 H 0.12 1.61 6.22 -51.92 -0.32 1.28 16 4 S 0.09 1.66 20.30 -107.50 -2.18 -0.53 16 5 C 0.25 5.20 7.64 -88.45 -0.68 4.52 16 6 N -0.52 -10.03 8.63 -10.90 -0.09 -10.12 16 7 C 0.05 0.99 7.22 -84.69 -0.61 0.38 16 8 C -0.08 -1.25 10.10 -39.23 -0.40 -1.65 16 9 C -0.13 -1.88 10.01 -39.61 -0.40 -2.27 16 10 C -0.12 -1.83 10.03 -39.51 -0.40 -2.23 16 11 C -0.09 -1.67 10.04 -39.52 -0.40 -2.07 16 12 C 0.06 1.27 6.87 -83.84 -0.58 0.70 16 13 N -0.44 -9.90 2.82 -115.61 -0.33 -10.22 16 14 C 0.24 5.87 5.69 -5.20 -0.03 5.84 16 15 C -0.54 -14.54 9.39 -34.44 -0.32 -14.87 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 18 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.54 7.76 6.83 -10.99 -0.08 7.68 16 24 O -0.52 -9.17 15.61 5.55 0.09 -9.09 16 25 N -0.61 -6.73 3.01 -172.04 -0.52 -7.25 16 26 C 0.07 0.56 6.26 -3.32 -0.02 0.54 16 27 C 0.05 0.36 7.00 37.53 0.26 0.62 16 28 O -0.38 -3.54 10.74 -35.23 -0.38 -3.92 16 29 C 0.05 0.39 6.98 37.29 0.26 0.65 16 30 C 0.08 0.73 6.63 -3.55 -0.02 0.71 16 31 H 0.10 1.44 5.86 -51.93 -0.30 1.13 16 32 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.42 7.68 -51.93 -0.40 1.02 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.81 5.49 -51.93 -0.29 0.53 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.09 7.08 -51.93 -0.37 0.72 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -32.01 405.89 -11.50 -43.51 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.70 Total: 2.43 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.21 Total: -2.94 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.20 Total: -51.50 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.29 Total: -13.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.18 Total: -0.53 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.01 -11.50 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.877 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds