Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47138 * 2 1 4 4 S 1.80999 * 109.47449 * 120.00444 * 2 1 3 5 5 C 1.76205 * 99.99945 * 295.00281 * 4 2 1 6 6 N 1.31054 * 125.07504 * 0.02562 * 5 4 2 7 7 C 1.35877 * 109.61746 * 179.97438 * 6 5 4 8 8 C 1.39723 * 133.37310 * 180.02562 * 7 6 5 9 9 C 1.37695 * 119.77733 * 179.97438 * 8 7 6 10 10 C 1.38695 * 120.49292 * 0.02562 * 9 8 7 11 11 C 1.37978 * 120.43672 * 359.97438 * 10 9 8 12 12 C 1.38654 * 119.85030 * 0.02562 * 11 10 9 13 13 N 1.36629 * 125.08015 * 180.02562 * 5 4 2 14 14 C 1.46493 * 126.38381 * 359.97078 * 13 5 4 15 15 C 1.50704 * 109.47265 * 90.02724 * 14 13 5 16 16 H 1.08002 * 119.99914 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00188 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99993 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47366 * 119.99954 * 19 17 15 22 22 H 1.48503 * 109.47275 * 239.99873 * 19 17 15 23 23 C 1.50700 * 109.47205 * 240.00585 * 2 1 3 24 24 O 1.21288 * 119.99962 * 265.00081 * 23 2 1 25 25 N 1.34772 * 120.00092 * 84.99723 * 23 2 1 26 26 C 1.47147 * 120.98510 * 359.72197 * 25 23 2 27 27 C 1.53712 * 108.16419 * 129.42940 * 26 25 23 28 28 O 1.42963 * 109.14795 * 52.53994 * 27 26 25 29 29 C 1.42963 * 114.16277 * 297.28711 * 28 27 26 30 30 C 1.47160 * 120.98022 * 179.97438 * 25 23 2 31 31 H 1.09000 * 109.46897 * 299.99608 * 1 2 3 32 32 H 1.09005 * 109.46814 * 59.99755 * 1 2 3 33 33 H 1.08995 * 109.46714 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.11630 * 359.97235 * 8 7 6 35 35 H 1.07997 * 119.75101 * 179.72342 * 9 8 7 36 36 H 1.08008 * 119.78023 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.07390 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47490 * 210.02486 * 14 13 5 39 39 H 1.08998 * 109.47420 * 330.02596 * 14 13 5 40 40 H 0.96999 * 120.00205 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.68247 * 249.21089 * 26 25 23 42 42 H 1.09000 * 109.67888 * 9.76371 * 26 25 23 43 43 H 1.09001 * 109.65779 * 292.57471 * 27 26 25 44 44 H 1.08999 * 109.48155 * 172.40177 * 27 26 25 45 45 H 1.09001 * 109.51432 * 302.65547 * 29 28 27 46 46 H 1.08999 * 109.55081 * 182.52803 * 29 28 27 47 47 H 1.08999 * 109.68193 * 350.24160 * 30 25 23 48 48 H 1.09004 * 109.67710 * 110.75145 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8533 1.4778 5 6 1.5440 0.2420 2.7257 6 7 0.8653 1.3410 2.5039 7 6 0.5707 1.9418 3.6865 8 6 -0.1176 3.1100 4.0241 9 6 -0.2550 3.4645 5.3475 10 6 0.2852 2.6708 6.3484 11 6 0.9677 1.5143 6.0316 12 6 1.1157 1.1420 4.7042 13 7 1.7262 0.0726 4.0692 14 6 2.4341 -1.0340 4.7174 15 6 3.8909 -0.6788 4.8682 16 1 4.2530 0.2761 4.5168 17 6 4.7613 -1.5727 5.4549 18 7 4.3202 -2.7353 5.8833 19 14 6.5671 -1.1326 5.6412 20 1 6.8065 0.2224 5.0828 21 1 6.9344 -1.1476 7.0800 22 1 7.3962 -2.1231 4.9084 23 6 2.0324 -0.7103 -1.2305 24 8 2.3208 -1.8871 -1.1762 25 7 2.1610 -0.0379 -2.3914 26 6 1.8116 1.3886 -2.4834 27 6 2.9911 2.1300 -3.1328 28 8 3.3350 1.4808 -4.3593 29 6 3.7831 0.1324 -4.2020 30 6 2.6500 -0.7099 -3.6059 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 -0.5403 3.7328 3.2497 35 1 -0.7833 4.3698 5.6077 36 1 0.1701 2.9596 7.3828 37 1 1.3863 0.9009 6.8157 38 1 2.0009 -1.2162 5.7009 39 1 2.3405 -1.9323 4.1072 40 1 4.9327 -3.3643 6.2957 41 1 0.9173 1.5088 -3.0949 42 1 1.6307 1.7873 -1.4852 43 1 3.8487 2.1151 -2.4602 44 1 2.7048 3.1621 -3.3350 45 1 4.6435 0.1103 -3.5333 46 1 4.0663 -0.2735 -5.1732 47 1 3.0244 -1.7014 -3.3513 48 1 1.8386 -0.7983 -4.3284 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032957485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = -14.845818 kcal Electronic energy + Delta-G solvation = -31956.114803 eV Core-core repulsion = 27716.635704 eV Total energy + Delta-G solvation = -4239.479099 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.83225 -41.56823 -39.43635 -38.11274 -36.14332 -35.97714 -34.57038 -34.02675 -32.26035 -31.33202 -30.26663 -29.12454 -28.97444 -26.02212 -25.37868 -25.01074 -24.54433 -23.13335 -22.82776 -21.60752 -20.50912 -19.01320 -18.89613 -18.52426 -18.06310 -17.57238 -17.35445 -16.95906 -16.62568 -16.54678 -16.32001 -16.22937 -16.02008 -15.68520 -15.24283 -14.92044 -14.87933 -14.86604 -14.64809 -14.48638 -13.84848 -13.71952 -13.47241 -13.40973 -13.25686 -13.12998 -12.90544 -12.86543 -12.73677 -12.67727 -12.49131 -12.38366 -12.16827 -12.02485 -11.82519 -11.39229 -11.31293 -11.10034 -11.04552 -10.95158 -10.78296 -10.03903 -9.75017 -9.02329 -8.49651 -8.39169 -6.57912 -0.07743 -0.00794 0.68864 0.84751 1.31577 1.32814 1.33215 1.45256 1.66198 1.69763 2.00951 2.30066 2.81827 2.90858 2.98413 3.10995 3.46179 3.64810 3.68232 3.80613 3.95312 4.06228 4.07108 4.15893 4.21568 4.22858 4.24778 4.45785 4.46410 4.56964 4.57895 4.61494 4.69939 4.73919 4.76516 4.80361 4.82621 4.89045 4.93746 5.14934 5.23501 5.33260 5.45602 5.61249 5.63466 5.70538 5.72363 5.99275 6.00191 6.05372 6.05794 6.51094 6.72292 6.79219 7.13795 8.67316 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.003227 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.675513 B = 8675.986534 C =10938.838781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.134 0.866 4 S 0.027 5.973 5 C 0.238 3.762 6 N -0.503 5.503 7 C 0.027 3.973 8 C -0.077 4.077 9 C -0.119 4.119 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.026 3.974 13 N -0.459 5.459 14 C 0.257 3.743 15 C -0.551 4.551 16 H 0.050 0.950 17 C 0.026 3.974 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.271 1.271 21 H -0.268 1.268 22 H -0.272 1.272 23 C 0.540 3.460 24 O -0.562 6.562 25 N -0.606 5.606 26 C 0.063 3.937 27 C 0.044 3.956 28 O -0.389 6.389 29 C 0.051 3.949 30 C 0.075 3.925 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.274 0.726 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.051 0.949 44 H 0.135 0.865 45 H 0.048 0.952 46 H 0.132 0.868 47 H 0.088 0.912 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 13.159 -15.567 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.231 4.231 3 H 0.151 0.849 4 S 0.258 5.742 5 C -0.135 4.135 6 N -0.229 5.229 7 C -0.095 4.095 8 C -0.097 4.097 9 C -0.139 4.139 10 C -0.120 4.120 11 C -0.146 4.146 12 C -0.086 4.086 13 N -0.147 5.147 14 C 0.137 3.863 15 C -0.589 4.589 16 H 0.068 0.932 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.791 3.209 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.197 1.197 23 C 0.327 3.673 24 O -0.440 6.440 25 N -0.340 5.340 26 C -0.059 4.059 27 C -0.033 4.033 28 O -0.307 6.307 29 C -0.026 4.026 30 C -0.047 4.047 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.069 0.931 44 H 0.153 0.847 45 H 0.066 0.934 46 H 0.150 0.850 47 H 0.107 0.893 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.347 11.571 -16.290 21.289 hybrid contribution 0.802 -0.074 1.533 1.732 sum -6.546 11.498 -14.757 19.819 Atomic orbital electron populations 1.21967 0.88390 1.03385 1.05467 1.23493 1.03301 1.04019 0.92255 0.84872 1.86746 1.68369 1.26026 0.93045 1.25468 1.01449 0.99006 0.87603 1.70780 1.19925 1.06283 1.25938 1.19583 1.03574 0.98278 0.88051 1.20535 0.98166 0.93089 0.97893 1.21290 1.00669 1.01007 0.90897 1.21246 0.96759 0.92636 1.01389 1.20263 1.02905 0.99708 0.91760 1.19523 1.01436 0.90981 0.96660 1.45811 1.43038 1.20978 1.04919 1.19290 0.91593 0.82672 0.92737 1.21338 0.92818 1.03005 1.41759 0.93213 1.25714 1.03730 0.94260 0.93859 1.70008 1.37569 1.08234 1.39553 0.85357 0.78525 0.78457 0.78525 1.19594 1.19259 1.19700 1.19800 0.77038 0.86352 0.84129 1.90739 1.51208 1.17168 1.84923 1.48107 1.64904 1.12064 1.08891 1.22954 1.00017 0.78574 1.04337 1.23231 0.95940 0.98003 0.86109 1.87956 1.85839 1.26265 1.30656 1.23051 0.94437 0.81977 1.03140 1.22477 0.98884 0.97729 0.85626 0.89877 0.88360 0.92365 0.83217 0.81243 0.82318 0.87323 0.95113 0.94950 0.91690 0.87671 0.87627 0.93100 0.84682 0.93354 0.85019 0.89337 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.97 71.98 0.65 -2.73 16 2 C -0.10 -2.87 1.84 29.85 0.05 -2.82 16 3 H 0.13 3.50 6.22 -2.39 -0.01 3.48 16 4 S 0.03 1.10 20.30 -56.49 -1.15 -0.05 16 5 C 0.24 10.38 7.64 179.59 1.37 11.75 16 6 N -0.50 -19.61 8.63 -188.41 -1.63 -21.24 16 7 C 0.03 1.02 7.22 39.42 0.28 1.31 16 8 C -0.08 -2.17 10.10 22.50 0.23 -1.95 16 9 C -0.12 -2.78 10.01 22.25 0.22 -2.56 16 10 C -0.10 -2.72 10.03 22.32 0.22 -2.50 16 11 C -0.13 -4.69 10.04 22.31 0.22 -4.46 16 12 C 0.03 1.11 6.87 38.72 0.27 1.38 16 13 N -0.46 -22.13 2.82 -519.69 -1.46 -23.60 16 14 C 0.26 13.84 5.69 85.64 0.49 14.33 16 15 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 17 C 0.03 1.44 5.46 84.65 0.46 1.90 16 18 N -0.92 -52.84 13.29 21.45 0.28 -52.56 16 19 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C 0.54 15.66 6.83 87.66 0.60 16.26 16 24 O -0.56 -20.86 15.61 -3.05 -0.05 -20.91 16 25 N -0.61 -12.67 3.01 -816.60 -2.46 -15.13 16 26 C 0.06 0.88 6.26 86.50 0.54 1.42 16 27 C 0.04 0.59 7.00 72.22 0.51 1.09 16 28 O -0.39 -6.33 10.74 -148.98 -1.60 -7.93 16 29 C 0.05 0.76 6.98 72.07 0.50 1.27 16 30 C 0.07 1.33 6.63 86.34 0.57 1.90 16 31 H 0.08 2.40 5.86 -2.39 -0.01 2.39 16 32 H 0.10 1.76 7.85 -2.38 -0.02 1.74 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.03 1.86 7.68 -2.39 -0.02 1.84 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.11 1.41 5.49 -2.39 -0.01 1.40 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.88 7.08 -2.39 -0.02 1.87 16 48 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -74.83 405.89 2.38 -72.45 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.98 Total: 18.53 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 7.43 Total: 4.55 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.27 Total: -112.52 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.65 Total: -28.84 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -1.15 Total: -0.05 kcal Total: -74.83 2.38 -72.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.604 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds