Wall clock time and date at job start Tue Mar 31 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 5 5 C 1.76198 * 99.99953 * 65.00014 * 4 2 1 6 6 N 1.31049 * 125.08310 * 359.70101 * 5 4 2 7 7 C 1.35870 * 109.62485 * 179.82960 * 6 5 4 8 8 C 1.39729 * 133.37736 * 180.12538 * 7 6 5 9 9 C 1.37682 * 119.78153 * 180.34616 * 8 7 6 10 10 C 1.38702 * 120.49590 * 0.02562 * 9 8 7 11 11 C 1.37982 * 120.42943 * 359.97438 * 10 9 8 12 12 C 1.38647 * 119.85664 * 0.02562 * 11 10 9 13 13 N 1.36637 * 125.07642 * 180.02562 * 5 4 2 14 14 C 1.46496 * 126.38462 * 359.96752 * 13 5 4 15 15 C 1.50692 * 109.47490 * 90.02578 * 14 13 5 16 16 H 1.08006 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00469 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00026 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47379 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46983 * 120.00165 * 19 17 15 22 22 H 1.48506 * 109.46676 * 239.99640 * 19 17 15 23 23 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 24 24 O 1.21287 * 119.99919 * 99.99446 * 23 2 1 25 25 N 1.34772 * 120.00370 * 279.99712 * 23 2 1 26 26 C 1.47158 * 120.97956 * 359.72085 * 25 23 2 27 27 C 1.53705 * 108.16303 * 129.43106 * 26 25 23 28 28 O 1.42960 * 109.14843 * 52.53769 * 27 26 25 29 29 C 1.42961 * 114.16661 * 297.28817 * 28 27 26 30 30 C 1.47147 * 120.98760 * 179.97438 * 25 23 2 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.08004 * 120.10582 * 0.36796 * 8 7 6 35 35 H 1.08001 * 119.75657 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.78795 * 180.02562 * 10 9 8 37 37 H 1.08005 * 120.07134 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46918 * 210.02818 * 14 13 5 39 39 H 1.08999 * 109.47437 * 330.02037 * 14 13 5 40 40 H 0.96993 * 119.99747 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.67641 * 249.21232 * 26 25 23 42 42 H 1.08999 * 109.67687 * 9.75892 * 26 25 23 43 43 H 1.09005 * 109.65767 * 292.56937 * 27 26 25 44 44 H 1.09004 * 109.48634 * 172.40053 * 27 26 25 45 45 H 1.08999 * 109.51096 * 302.65633 * 29 28 27 46 46 H 1.08997 * 109.55599 * 182.53438 * 29 28 27 47 47 H 1.08998 * 109.68160 * 350.24174 * 30 25 23 48 48 H 1.09004 * 109.67864 * 110.75047 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8533 -1.4779 5 6 1.5439 0.2422 -2.7257 6 7 0.8609 1.3385 -2.5042 7 6 0.5716 1.9426 -3.6864 8 6 -0.1156 3.1115 -4.0239 9 6 -0.2528 3.4662 -5.3471 10 6 0.2857 2.6716 -6.3483 11 6 0.9672 1.5144 -6.0316 12 6 1.1149 1.1417 -4.7043 13 7 1.7252 0.0723 -4.0693 14 6 2.4331 -1.0344 -4.7175 15 6 1.4619 -2.1486 -5.0113 16 1 0.4212 -2.0427 -4.7424 17 6 1.9017 -3.3031 -5.6233 18 7 3.1688 -3.4318 -5.9512 19 14 0.6976 -4.6839 -5.9881 20 1 -0.6581 -4.2938 -5.5244 21 1 0.6665 -4.9401 -7.4505 22 1 1.1275 -5.9157 -5.2788 23 6 2.0323 -0.7104 1.2305 24 8 2.4063 -1.8617 1.1558 25 7 2.0659 -0.0664 2.4139 26 6 1.6231 1.3323 2.5280 27 6 0.6241 1.4251 3.6924 28 8 1.2114 0.8483 4.8613 29 6 1.5129 -0.5437 4.7387 30 6 2.5517 -0.7393 3.6290 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.5375 3.7347 -3.2492 35 1 -0.7837 4.3700 -5.6075 36 1 0.1717 2.9610 -7.3825 37 1 1.3845 0.9002 -6.8158 38 1 2.8779 -0.6850 -5.6493 39 1 3.2176 -1.4013 -4.0557 40 1 3.4783 -4.2442 -6.3814 41 1 2.4817 1.9742 2.7251 42 1 1.1386 1.6406 1.6016 43 1 -0.2872 0.8838 3.4378 44 1 0.3847 2.4712 3.8836 45 1 0.6050 -1.0922 4.4879 46 1 1.9134 -0.9148 5.6821 47 1 2.6824 -1.8034 3.4320 48 1 3.5027 -0.3032 3.9349 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032957486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:22 Heat of formation + Delta-G solvation = 3.016991 kcal Electronic energy + Delta-G solvation = -31919.164529 eV Core-core repulsion = 27680.460020 eV Total energy + Delta-G solvation = -4238.704510 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.33880 -40.64473 -38.57087 -36.76408 -35.13702 -34.29020 -33.35579 -32.33340 -31.48466 -29.88686 -28.89777 -28.21557 -27.23430 -25.00301 -24.18008 -23.42754 -23.17831 -22.33191 -21.53041 -20.12479 -19.49250 -17.82764 -17.29866 -16.89242 -16.65569 -16.52120 -16.08104 -15.94182 -15.83871 -15.48656 -15.26509 -14.79221 -14.56835 -14.53333 -14.19477 -13.88262 -13.55194 -13.52482 -13.34663 -12.83058 -12.58158 -12.45351 -12.40684 -12.07687 -11.95912 -11.87484 -11.77276 -11.58483 -11.49442 -11.18668 -11.10868 -10.96852 -10.88760 -10.57293 -10.33809 -10.23788 -10.02773 -9.92141 -9.50097 -9.34925 -8.91416 -8.71139 -8.61028 -7.55149 -7.02173 -6.32118 -4.40894 1.31607 1.37700 2.03000 2.20034 2.40075 2.65273 3.15694 3.18285 3.26645 3.31965 3.40690 3.64163 4.10957 4.25686 4.32181 4.33121 4.58166 4.65718 4.77936 4.78484 4.89329 4.89946 5.00687 5.02616 5.12373 5.20806 5.31822 5.33412 5.38315 5.41940 5.51468 5.57133 5.74495 5.82355 5.85766 5.91984 6.04696 6.08771 6.28266 6.37186 6.66730 6.72695 6.84400 6.90713 6.95007 7.01085 7.21857 7.32640 7.56270 7.75106 7.77085 7.85260 8.23752 8.64461 9.26977 10.75664 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008711 B = 0.003049 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.489762 B = 9180.496825 C =11718.315342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 H 0.120 0.880 4 S 0.089 5.911 5 C 0.250 3.750 6 N -0.520 5.520 7 C 0.051 3.949 8 C -0.079 4.079 9 C -0.134 4.134 10 C -0.122 4.122 11 C -0.090 4.090 12 C 0.061 3.939 13 N -0.438 5.438 14 C 0.236 3.764 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.888 5.888 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.542 3.458 24 O -0.516 6.516 25 N -0.613 5.613 26 C 0.066 3.934 27 C 0.048 3.952 28 O -0.380 6.380 29 C 0.048 3.952 30 C 0.078 3.922 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.269 0.731 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 11.922 15.425 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.252 4.252 3 H 0.138 0.862 4 S 0.321 5.679 5 C -0.123 4.123 6 N -0.247 5.247 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.111 4.111 12 C -0.053 4.053 13 N -0.124 5.124 14 C 0.118 3.882 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.204 1.204 23 C 0.328 3.672 24 O -0.391 6.391 25 N -0.349 5.349 26 C -0.057 4.057 27 C -0.030 4.030 28 O -0.298 6.298 29 C -0.029 4.029 30 C -0.045 4.045 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.260 10.353 16.102 19.419 hybrid contribution -0.974 -0.069 -1.334 1.653 sum -4.234 10.284 14.769 18.488 Atomic orbital electron populations 1.22091 0.89770 1.03860 1.04520 1.23456 1.02447 1.04370 0.94899 0.86178 1.86650 1.67061 1.24433 0.89793 1.25386 1.00803 0.97970 0.88185 1.70786 1.20402 1.07452 1.26012 1.19044 1.02378 0.96974 0.88738 1.20044 0.99435 0.94481 0.96029 1.20721 1.02273 1.00271 0.92187 1.20743 0.99779 0.94757 0.99001 1.20070 1.00821 0.97389 0.92851 1.18991 1.00742 0.90466 0.95092 1.45979 1.42562 1.19921 1.03927 1.19860 0.92555 0.81791 0.94031 1.21253 0.95345 0.99991 1.41222 0.91604 1.24910 0.95572 0.98309 0.94663 1.69922 1.14181 1.28063 1.40319 0.86312 0.81059 0.81388 0.78084 1.19453 1.20622 1.20411 1.19861 0.77431 0.86417 0.83488 1.90766 1.46900 1.16783 1.84671 1.47978 1.65445 1.13430 1.08089 1.22693 0.99536 0.82416 1.01081 1.23072 0.94727 1.00017 0.85174 1.87966 1.81905 1.23533 1.36402 1.22997 0.97942 0.82724 0.99270 1.22313 0.97617 1.00478 0.84101 0.91288 0.92065 0.88266 0.86257 0.86172 0.85979 0.85830 0.93151 0.92823 0.92176 0.90016 0.87873 0.92285 0.87375 0.92444 0.87468 0.87785 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.71 37.16 0.32 -1.57 16 2 C -0.12 -1.71 1.79 -27.88 -0.05 -1.76 16 3 H 0.12 1.57 6.87 -51.92 -0.36 1.21 16 4 S 0.09 1.71 20.24 -107.50 -2.18 -0.47 16 5 C 0.25 5.20 7.65 -88.44 -0.68 4.52 16 6 N -0.52 -10.05 8.62 -10.90 -0.09 -10.14 16 7 C 0.05 0.99 7.22 -84.69 -0.61 0.38 16 8 C -0.08 -1.26 10.10 -39.23 -0.40 -1.65 16 9 C -0.13 -1.88 10.01 -39.61 -0.40 -2.28 16 10 C -0.12 -1.84 10.03 -39.50 -0.40 -2.23 16 11 C -0.09 -1.67 10.04 -39.52 -0.40 -2.07 16 12 C 0.06 1.27 6.87 -83.84 -0.58 0.69 16 13 N -0.44 -9.92 2.82 -115.62 -0.33 -10.25 16 14 C 0.24 5.90 5.69 -5.20 -0.03 5.87 16 15 C -0.54 -14.58 9.39 -34.44 -0.32 -14.91 16 16 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 17 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.54 7.70 6.89 -10.99 -0.08 7.63 16 24 O -0.52 -9.19 15.51 5.55 0.09 -9.10 16 25 N -0.61 -6.60 3.01 -172.05 -0.52 -7.12 16 26 C 0.07 0.52 6.09 -3.32 -0.02 0.50 16 27 C 0.05 0.33 7.00 37.52 0.26 0.60 16 28 O -0.38 -3.32 10.74 -35.23 -0.38 -3.70 16 29 C 0.05 0.37 6.98 37.29 0.26 0.63 16 30 C 0.08 0.71 6.63 -3.56 -0.02 0.69 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 33 H 0.10 1.51 5.85 -51.93 -0.30 1.20 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.40 7.68 -51.93 -0.40 1.00 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.78 4.80 -51.93 -0.25 0.53 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.07 7.08 -51.93 -0.37 0.70 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -32.20 404.28 -11.47 -43.67 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.65 Total: 2.15 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.22 Total: -3.18 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.20 Total: -51.54 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.29 Total: -12.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.18 Total: -0.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.20 -11.47 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.692 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds