Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 5 5 C 1.76198 * 99.99953 * 65.00014 * 4 2 1 6 6 N 1.31049 * 125.08310 * 359.70101 * 5 4 2 7 7 C 1.35870 * 109.62485 * 179.82960 * 6 5 4 8 8 C 1.39729 * 133.37736 * 180.12538 * 7 6 5 9 9 C 1.37682 * 119.78153 * 180.34616 * 8 7 6 10 10 C 1.38702 * 120.49590 * 0.02562 * 9 8 7 11 11 C 1.37982 * 120.42943 * 359.97438 * 10 9 8 12 12 C 1.38647 * 119.85664 * 0.02562 * 11 10 9 13 13 N 1.36637 * 125.07642 * 180.02562 * 5 4 2 14 14 C 1.46496 * 126.38462 * 359.96752 * 13 5 4 15 15 C 1.50692 * 109.47490 * 90.02578 * 14 13 5 16 16 H 1.08006 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00469 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00026 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47379 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46983 * 120.00165 * 19 17 15 22 22 H 1.48506 * 109.46676 * 239.99640 * 19 17 15 23 23 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 24 24 O 1.21287 * 119.99919 * 99.99446 * 23 2 1 25 25 N 1.34772 * 120.00370 * 279.99712 * 23 2 1 26 26 C 1.47158 * 120.97956 * 359.72085 * 25 23 2 27 27 C 1.53705 * 108.16303 * 129.43106 * 26 25 23 28 28 O 1.42960 * 109.14843 * 52.53769 * 27 26 25 29 29 C 1.42961 * 114.16661 * 297.28817 * 28 27 26 30 30 C 1.47147 * 120.98760 * 179.97438 * 25 23 2 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.08004 * 120.10582 * 0.36796 * 8 7 6 35 35 H 1.08001 * 119.75657 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.78795 * 180.02562 * 10 9 8 37 37 H 1.08005 * 120.07134 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46918 * 210.02818 * 14 13 5 39 39 H 1.08999 * 109.47437 * 330.02037 * 14 13 5 40 40 H 0.96993 * 119.99747 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.67641 * 249.21232 * 26 25 23 42 42 H 1.08999 * 109.67687 * 9.75892 * 26 25 23 43 43 H 1.09005 * 109.65767 * 292.56937 * 27 26 25 44 44 H 1.09004 * 109.48634 * 172.40053 * 27 26 25 45 45 H 1.08999 * 109.51096 * 302.65633 * 29 28 27 46 46 H 1.08997 * 109.55599 * 182.53438 * 29 28 27 47 47 H 1.08998 * 109.68160 * 350.24174 * 30 25 23 48 48 H 1.09004 * 109.67864 * 110.75047 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8533 -1.4779 5 6 1.5439 0.2422 -2.7257 6 7 0.8609 1.3385 -2.5042 7 6 0.5716 1.9426 -3.6864 8 6 -0.1156 3.1115 -4.0239 9 6 -0.2528 3.4662 -5.3471 10 6 0.2857 2.6716 -6.3483 11 6 0.9672 1.5144 -6.0316 12 6 1.1149 1.1417 -4.7043 13 7 1.7252 0.0723 -4.0693 14 6 2.4331 -1.0344 -4.7175 15 6 1.4619 -2.1486 -5.0113 16 1 0.4212 -2.0427 -4.7424 17 6 1.9017 -3.3031 -5.6233 18 7 3.1688 -3.4318 -5.9512 19 14 0.6976 -4.6839 -5.9881 20 1 -0.6581 -4.2938 -5.5244 21 1 0.6665 -4.9401 -7.4505 22 1 1.1275 -5.9157 -5.2788 23 6 2.0323 -0.7104 1.2305 24 8 2.4063 -1.8617 1.1558 25 7 2.0659 -0.0664 2.4139 26 6 1.6231 1.3323 2.5280 27 6 0.6241 1.4251 3.6924 28 8 1.2114 0.8483 4.8613 29 6 1.5129 -0.5437 4.7387 30 6 2.5517 -0.7393 3.6290 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.5375 3.7347 -3.2492 35 1 -0.7837 4.3700 -5.6075 36 1 0.1717 2.9610 -7.3825 37 1 1.3845 0.9002 -6.8158 38 1 2.8779 -0.6850 -5.6493 39 1 3.2176 -1.4013 -4.0557 40 1 3.4783 -4.2442 -6.3814 41 1 2.4817 1.9742 2.7251 42 1 1.1386 1.6406 1.6016 43 1 -0.2872 0.8838 3.4378 44 1 0.3847 2.4712 3.8836 45 1 0.6050 -1.0922 4.4879 46 1 1.9134 -0.9148 5.6821 47 1 2.6824 -1.8034 3.4320 48 1 3.5027 -0.3032 3.9349 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032957486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = -15.477493 kcal Electronic energy + Delta-G solvation = -31919.966510 eV Core-core repulsion = 27680.460020 eV Total energy + Delta-G solvation = -4239.506490 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.82928 -41.57892 -39.41780 -38.11111 -36.15507 -35.97589 -34.58862 -34.03874 -32.20416 -31.33097 -30.26270 -29.12550 -29.01024 -25.92689 -25.37668 -24.97520 -24.54794 -23.22916 -22.85857 -21.60449 -20.43845 -19.02657 -18.85637 -18.52479 -18.06186 -17.55795 -17.30761 -16.85622 -16.72825 -16.56352 -16.36884 -16.19477 -16.01553 -15.71182 -15.17717 -14.93458 -14.87997 -14.86096 -14.70818 -14.49306 -13.85264 -13.65625 -13.52395 -13.42484 -13.22592 -13.12547 -12.88256 -12.82167 -12.73370 -12.66164 -12.52270 -12.36813 -12.15398 -12.02717 -11.80054 -11.39308 -11.28596 -11.10805 -11.05709 -10.95684 -10.78111 -10.03521 -9.74485 -9.02285 -8.49114 -8.39059 -6.57385 -0.07521 0.00249 0.68971 0.86284 1.29671 1.31577 1.33640 1.45577 1.66765 1.70164 2.01258 2.30400 2.84709 2.90966 2.98499 3.11058 3.46318 3.66789 3.70644 3.85676 3.93724 4.06444 4.08330 4.13351 4.21668 4.24225 4.24986 4.43833 4.46469 4.51697 4.57541 4.63035 4.69053 4.74963 4.76293 4.82443 4.83113 4.90163 4.93846 5.15203 5.24531 5.33367 5.46053 5.61408 5.63554 5.70897 5.72496 5.99416 6.00486 6.05987 6.08534 6.51487 6.72481 6.79383 7.14146 8.67383 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008711 B = 0.003049 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.489762 B = 9180.496825 C =11718.315342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.136 0.864 4 S 0.028 5.972 5 C 0.237 3.763 6 N -0.503 5.503 7 C 0.027 3.973 8 C -0.077 4.077 9 C -0.119 4.119 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.025 3.975 13 N -0.459 5.459 14 C 0.257 3.743 15 C -0.550 4.550 16 H 0.049 0.951 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.272 1.272 23 C 0.540 3.460 24 O -0.562 6.562 25 N -0.605 5.605 26 C 0.060 3.940 27 C 0.048 3.952 28 O -0.391 6.391 29 C 0.054 3.946 30 C 0.073 3.927 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.274 0.726 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.134 0.866 45 H 0.055 0.945 46 H 0.130 0.870 47 H 0.089 0.911 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 14.837 16.344 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.230 4.230 3 H 0.154 0.846 4 S 0.260 5.740 5 C -0.136 4.136 6 N -0.229 5.229 7 C -0.095 4.095 8 C -0.097 4.097 9 C -0.139 4.139 10 C -0.120 4.120 11 C -0.146 4.146 12 C -0.086 4.086 13 N -0.148 5.148 14 C 0.138 3.862 15 C -0.588 4.588 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.791 3.209 20 H -0.196 1.196 21 H -0.192 1.192 22 H -0.197 1.197 23 C 0.327 3.673 24 O -0.441 6.441 25 N -0.339 5.339 26 C -0.062 4.062 27 C -0.029 4.029 28 O -0.309 6.309 29 C -0.023 4.023 30 C -0.049 4.049 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.152 0.848 45 H 0.073 0.927 46 H 0.147 0.853 47 H 0.107 0.893 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.620 13.339 17.051 22.366 hybrid contribution -0.292 -0.760 -1.598 1.793 sum -5.911 12.579 15.453 20.784 Atomic orbital electron populations 1.22006 0.88688 1.03287 1.05440 1.23446 1.03085 1.04152 0.92273 0.84588 1.86784 1.68049 1.26372 0.92834 1.25500 1.01744 0.98698 0.87664 1.70770 1.19461 1.06678 1.26016 1.19588 1.03546 0.98285 0.88067 1.20534 0.98103 0.93143 0.97902 1.21290 1.00620 1.01061 0.90895 1.21247 0.96790 0.92630 1.01375 1.20262 1.03243 0.99405 0.91719 1.19529 1.01852 0.90610 0.96653 1.45813 1.43851 1.20217 1.04869 1.19284 0.91937 0.82317 0.92711 1.21333 0.94805 1.01142 1.41530 0.93260 1.25717 0.97222 1.00437 0.94262 1.70006 1.15653 1.28921 1.40781 0.85361 0.78630 0.78407 0.78495 1.19628 1.19218 1.19731 1.19810 0.77314 0.85908 0.84286 1.90746 1.49222 1.18697 1.85386 1.48083 1.63987 1.14507 1.07320 1.22974 1.00567 0.80615 1.02047 1.23228 0.94099 1.01509 0.84113 1.87962 1.81980 1.23807 1.37155 1.23029 0.97278 0.82541 0.99470 1.22481 0.98891 0.99669 0.83857 0.92667 0.88157 0.89988 0.83197 0.81237 0.82322 0.87330 0.95088 0.94955 0.91703 0.88705 0.87305 0.92071 0.84792 0.92695 0.85251 0.89298 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.71 71.98 0.63 -2.89 16 2 C -0.10 -2.83 1.79 29.85 0.05 -2.78 16 3 H 0.14 3.47 6.87 -2.39 -0.02 3.46 16 4 S 0.03 1.16 20.24 -56.49 -1.14 0.02 16 5 C 0.24 10.36 7.65 179.59 1.37 11.74 16 6 N -0.50 -19.63 8.62 -188.41 -1.62 -21.26 16 7 C 0.03 1.02 7.22 39.42 0.28 1.31 16 8 C -0.08 -2.17 10.10 22.50 0.23 -1.95 16 9 C -0.12 -2.78 10.01 22.25 0.22 -2.56 16 10 C -0.10 -2.73 10.03 22.32 0.22 -2.50 16 11 C -0.13 -4.69 10.04 22.31 0.22 -4.47 16 12 C 0.03 1.09 6.87 38.72 0.27 1.36 16 13 N -0.46 -22.18 2.82 -519.70 -1.46 -23.65 16 14 C 0.26 13.90 5.69 85.63 0.49 14.38 16 15 C -0.55 -31.43 9.39 25.60 0.24 -31.19 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 17 C 0.03 1.40 5.46 84.65 0.46 1.87 16 18 N -0.92 -53.05 13.29 21.45 0.28 -52.76 16 19 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.54 15.60 6.89 87.66 0.60 16.20 16 24 O -0.56 -21.01 15.51 -3.05 -0.05 -21.06 16 25 N -0.60 -12.43 3.01 -816.63 -2.46 -14.89 16 26 C 0.06 0.81 6.09 86.49 0.53 1.33 16 27 C 0.05 0.52 7.00 72.22 0.51 1.03 16 28 O -0.39 -5.77 10.74 -148.98 -1.60 -7.37 16 29 C 0.05 0.72 6.98 72.07 0.50 1.22 16 30 C 0.07 1.28 6.63 86.34 0.57 1.86 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.78 6.86 -2.39 -0.02 1.76 16 33 H 0.08 2.47 5.85 -2.39 -0.01 2.45 16 34 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 1.85 7.68 -2.39 -0.02 1.84 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 1.35 4.80 -2.39 -0.01 1.33 16 43 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.87 7.08 -2.39 -0.02 1.85 16 48 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.44 404.28 2.36 -73.08 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.98 Total: 17.59 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 7.40 Total: 3.95 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -5.27 Total: -112.56 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.65 Total: -28.43 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.14 Total: 0.02 kcal Total: -75.44 2.36 -73.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.604 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds