Wall clock time and date at job start Tue Mar 31 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 116.99915 * 2 1 4 4 C 1.38070 * 120.00329 * 0.22820 * 3 2 1 5 5 C 1.39989 * 119.84104 * 180.28277 * 4 3 2 6 6 C 1.46951 * 120.07860 * 179.74222 * 5 4 3 7 7 C 1.35050 * 119.99742 * 136.47414 * 6 5 4 8 8 C 1.46219 * 120.00259 * 348.43760 * 7 6 5 9 9 O 1.21748 * 119.99747 * 353.22825 * 8 7 6 10 10 N 1.34771 * 120.00160 * 173.22384 * 8 7 6 11 11 C 1.40054 * 119.99881 * 184.71880 * 10 8 7 12 12 C 1.38817 * 120.05256 * 325.79719 * 11 10 8 13 13 C 1.38141 * 119.97050 * 179.72260 * 12 11 10 14 14 C 1.38479 * 120.08966 * 0.55615 * 13 12 11 15 15 F 1.35099 * 119.94206 * 179.74298 * 14 13 12 16 16 C 1.38465 * 120.11061 * 359.72306 * 14 13 12 17 17 C 1.38287 * 120.02336 * 359.97438 * 16 14 13 18 18 F 1.35105 * 120.04565 * 179.97438 * 17 16 14 19 19 C 1.40033 * 119.83586 * 359.46516 * 5 4 3 20 20 C 1.37646 * 120.00609 * 0.27826 * 19 5 4 21 21 C 1.39066 * 120.15717 * 0.02562 * 20 19 5 22 22 O 1.35615 * 119.91778 * 179.97438 * 21 20 19 23 23 C 1.34763 * 116.99941 * 6.07162 * 22 21 20 24 24 H 1.07994 * 120.00072 * 5.40349 * 23 22 21 25 25 C 1.38704 * 119.99701 * 185.40705 * 23 22 21 26 26 N 1.31517 * 119.99770 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00108 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47346 * 90.00149 * 27 25 23 29 29 H 1.48498 * 109.47076 * 209.99940 * 27 25 23 30 30 H 1.48498 * 109.47088 * 329.99885 * 27 25 23 31 31 H 1.09002 * 109.46704 * 60.00099 * 1 2 3 32 32 H 1.08997 * 109.47340 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47322 * 300.00449 * 1 2 3 34 34 H 1.07995 * 120.08338 * 0.04706 * 4 3 2 35 35 H 1.07999 * 120.00369 * 316.47054 * 6 5 4 36 36 H 1.08000 * 119.99974 * 168.71862 * 7 6 5 37 37 H 0.96993 * 120.00137 * 4.71265 * 10 8 7 38 38 H 1.08000 * 120.00998 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.95285 * 180.27604 * 13 12 11 40 40 H 1.08002 * 119.98471 * 180.02562 * 16 14 13 41 41 H 1.08007 * 119.99567 * 180.25611 * 19 5 4 42 42 H 1.07995 * 119.92227 * 180.02562 * 20 19 5 43 43 H 0.96999 * 120.00166 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3693 0.0048 5 6 1.9333 3.6149 -0.0012 6 6 1.1381 4.8506 -0.0019 7 6 1.4888 5.8797 0.7992 8 6 2.4935 5.6839 1.8434 9 8 2.9237 4.5682 2.0726 10 7 2.9434 6.7383 2.5519 11 6 3.9758 6.5674 3.4827 12 6 4.0724 5.3855 4.2044 13 6 5.0947 5.2164 5.1180 14 6 6.0169 6.2289 5.3234 15 9 7.0124 6.0624 6.2213 16 6 5.9205 7.4115 4.6096 17 6 4.9026 7.5833 3.6894 18 9 4.8078 8.7372 2.9931 19 6 3.3321 3.6802 -0.0007 20 6 4.0753 2.5217 -0.0001 21 6 3.4405 1.2844 -0.0005 22 8 4.1776 0.1460 -0.0004 23 6 5.5123 0.2814 0.1271 24 1 5.9412 1.2554 0.3106 25 6 6.3352 -0.8303 0.0226 26 7 7.6378 -0.6981 0.1465 27 14 5.5933 -2.5151 -0.2942 28 1 5.5065 -2.7506 -1.7579 29 1 6.4504 -3.5577 0.3250 30 1 4.2331 -2.5763 0.2985 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2157 2.3144 0.0093 35 1 0.2732 4.9359 -0.6432 36 1 1.0239 6.8461 0.6717 37 1 2.5524 7.6156 2.4171 38 1 3.3515 4.5967 4.0482 39 1 5.1723 4.2950 5.6761 40 1 6.6410 8.1997 4.7711 41 1 3.8278 4.6398 -0.0012 42 1 5.1540 2.5737 0.0007 43 1 8.2133 -1.4756 0.0738 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033470250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:44 Heat of formation + Delta-G solvation = -90.758502 kcal Electronic energy + Delta-G solvation = -33423.005662 eV Core-core repulsion = 28458.268509 eV Total energy + Delta-G solvation = -4964.737152 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.21841 -49.05895 -40.61812 -39.65612 -38.44722 -37.69906 -36.40422 -34.69145 -33.14119 -32.33344 -31.01538 -29.76550 -29.54642 -28.51483 -26.61976 -25.37439 -24.18599 -23.48751 -22.37659 -21.57595 -21.12987 -19.65727 -18.50085 -18.09557 -17.91445 -17.65322 -17.21362 -16.72511 -16.21403 -16.12589 -15.84159 -15.47684 -15.38622 -15.25488 -14.99039 -14.71692 -14.41083 -14.27476 -14.23675 -13.83065 -13.71552 -13.61627 -13.25141 -13.07844 -12.87791 -12.60600 -12.30742 -12.26526 -12.17663 -11.80303 -11.58184 -11.52689 -11.11228 -10.84425 -10.76141 -10.57145 -10.42512 -10.19554 -9.72351 -9.47271 -9.27540 -9.16943 -8.78490 -8.26537 -7.86345 -6.85505 -6.44495 -4.04537 0.64792 0.84685 1.05690 2.16471 2.46144 2.86666 3.11356 3.24670 3.28374 3.44133 3.47476 3.69022 3.91372 4.16999 4.25977 4.42662 4.47362 4.67047 4.76059 4.79833 4.97648 4.99884 5.07742 5.26966 5.36391 5.41099 5.46446 5.53690 5.56380 5.71158 5.73783 5.75176 5.87702 6.02205 6.02883 6.12753 6.19670 6.29708 6.37112 6.54241 6.68445 6.88849 7.02028 7.22706 7.31540 7.50463 7.65105 7.93474 8.13698 8.15068 8.90200 9.54258 10.62122 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.003057 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.866317 B = 9157.676714 C =11642.494645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.158 4.158 6 C 0.035 3.965 7 C -0.264 4.264 8 C 0.541 3.459 9 O -0.489 6.489 10 N -0.674 5.674 11 C 0.116 3.884 12 C -0.066 4.066 13 C -0.138 4.138 14 C 0.109 3.891 15 F -0.133 7.133 16 C -0.173 4.173 17 C 0.094 3.906 18 F -0.132 7.132 19 C -0.010 4.010 20 C -0.208 4.208 21 C 0.160 3.840 22 O -0.196 6.196 23 C -0.384 4.384 24 H 0.108 0.892 25 C 0.065 3.935 26 N -0.872 5.872 27 Si 0.903 3.097 28 H -0.273 1.273 29 H -0.282 1.282 30 H -0.254 1.254 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.411 0.589 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 16.475 5.419 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.006 4.006 4 C -0.152 4.152 5 C -0.159 4.159 6 C 0.015 3.985 7 C -0.285 4.285 8 C 0.333 3.667 9 O -0.364 6.364 10 N -0.319 5.319 11 C 0.020 3.980 12 C -0.086 4.086 13 C -0.157 4.157 14 C 0.089 3.911 15 F -0.112 7.112 16 C -0.194 4.194 17 C 0.072 3.928 18 F -0.110 7.110 19 C -0.029 4.029 20 C -0.228 4.228 21 C 0.106 3.894 22 O -0.100 6.100 23 C -0.460 4.460 24 H 0.125 0.875 25 C -0.139 4.139 26 N -0.509 5.509 27 Si 0.728 3.272 28 H -0.198 1.198 29 H -0.208 1.208 30 H -0.177 1.177 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.247 0.753 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.090 15.123 5.506 20.130 hybrid contribution -0.220 0.390 -0.125 0.464 sum -12.310 15.513 5.381 20.522 Atomic orbital electron populations 1.22870 0.80344 1.02836 1.00334 1.86169 1.19477 1.26619 1.90219 1.17910 0.89199 0.84417 1.09038 1.20668 0.98098 0.90819 1.05636 1.18091 0.92877 0.91307 1.13619 1.22349 0.93753 0.91078 0.91289 1.22476 1.04639 1.00687 1.00667 1.18681 0.81910 0.83952 0.82121 1.91009 1.56151 1.22590 1.66640 1.43481 1.35868 1.13278 1.39296 1.17751 0.90945 0.95387 0.93900 1.21228 0.98746 0.96799 0.91807 1.21230 0.94794 0.99337 1.00372 1.17288 0.88092 0.94578 0.91179 1.91526 1.58896 1.95741 1.65000 1.20801 1.00451 0.99144 0.98960 1.17031 0.96173 0.83530 0.96058 1.91499 1.95730 1.46445 1.77363 1.20562 0.91864 0.96776 0.93670 1.20860 1.00880 0.90602 1.10450 1.18576 0.87693 0.86902 0.96251 1.83595 1.20371 1.27416 1.78583 1.20862 0.77364 0.98393 1.49347 0.87460 1.24485 0.94361 0.99475 0.95587 1.69633 1.02534 1.32054 1.46652 0.86196 0.80308 0.81516 0.79168 1.19829 1.20757 1.17744 0.93536 0.89202 0.93549 0.86279 0.85522 0.85465 0.75337 0.81904 0.83517 0.83271 0.88028 0.84462 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.31 -6.31 10.28 -34.21 -0.35 -6.66 16 3 C 0.04 0.82 6.70 -39.13 -0.26 0.55 16 4 C -0.13 -2.29 8.77 -38.99 -0.34 -2.63 16 5 C -0.16 -2.61 4.54 -105.04 -0.48 -3.09 16 6 C 0.03 0.42 9.80 -37.19 -0.36 0.05 16 7 C -0.26 -2.81 9.90 -37.51 -0.37 -3.18 16 8 C 0.54 7.08 6.61 -13.06 -0.09 6.99 16 9 O -0.49 -8.33 9.56 5.15 0.05 -8.28 16 10 N -0.67 -7.22 5.23 -11.10 -0.06 -7.27 16 11 C 0.12 1.40 6.32 -83.58 -0.53 0.87 16 12 C -0.07 -0.84 8.70 -39.40 -0.34 -1.19 16 13 C -0.14 -1.65 10.02 -39.53 -0.40 -2.04 16 14 C 0.11 1.28 7.30 -39.41 -0.29 0.99 16 15 F -0.13 -1.62 17.26 2.25 0.04 -1.58 16 16 C -0.17 -1.86 10.00 -39.48 -0.39 -2.25 16 17 C 0.09 1.06 7.31 -39.26 -0.29 0.77 16 18 F -0.13 -1.42 16.94 2.25 0.04 -1.38 16 19 C -0.01 -0.19 6.59 -39.13 -0.26 -0.45 16 20 C -0.21 -4.66 9.11 -39.49 -0.36 -5.02 16 21 C 0.16 3.85 6.67 -38.76 -0.26 3.59 16 22 O -0.20 -5.37 8.35 -13.96 -0.12 -5.49 16 23 C -0.38 -11.01 9.89 30.90 0.31 -10.71 16 24 H 0.11 3.14 5.51 -52.49 -0.29 2.85 16 25 C 0.07 1.85 5.49 -17.51 -0.10 1.75 16 26 N -0.87 -25.29 13.96 55.48 0.77 -24.51 16 27 Si 0.90 22.12 28.62 -169.99 -4.86 17.26 16 28 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.25 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 34 H 0.12 1.64 6.28 -52.49 -0.33 1.31 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.41 3.13 8.62 -40.82 -0.35 2.78 16 38 H 0.16 2.30 6.14 -52.49 -0.32 1.98 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.10 1.80 7.00 -52.48 -0.37 1.44 16 42 H 0.14 3.24 5.70 -52.49 -0.30 2.94 16 43 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -32.94 378.32 -6.61 -39.55 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.00 Total: 6.23 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.82 Total: -13.55 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.72 Total: -31.79 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.42 Total: -20.44 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.94 -6.61 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033470250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.209 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds