Wall clock time and date at job start Tue Mar 31 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 116.99915 * 2 1 4 4 C 1.38070 * 120.00329 * 0.22820 * 3 2 1 5 5 C 1.39989 * 119.84104 * 180.28277 * 4 3 2 6 6 C 1.46951 * 120.07860 * 179.74222 * 5 4 3 7 7 C 1.35050 * 119.99742 * 136.47414 * 6 5 4 8 8 C 1.46219 * 120.00259 * 348.43760 * 7 6 5 9 9 O 1.21748 * 119.99747 * 353.22825 * 8 7 6 10 10 N 1.34771 * 120.00160 * 173.22384 * 8 7 6 11 11 C 1.40054 * 119.99881 * 184.71880 * 10 8 7 12 12 C 1.38817 * 120.05256 * 325.79719 * 11 10 8 13 13 C 1.38141 * 119.97050 * 179.72260 * 12 11 10 14 14 C 1.38479 * 120.08966 * 0.55615 * 13 12 11 15 15 F 1.35099 * 119.94206 * 179.74298 * 14 13 12 16 16 C 1.38465 * 120.11061 * 359.72306 * 14 13 12 17 17 C 1.38287 * 120.02336 * 359.97438 * 16 14 13 18 18 F 1.35105 * 120.04565 * 179.97438 * 17 16 14 19 19 C 1.40033 * 119.83586 * 359.46516 * 5 4 3 20 20 C 1.37646 * 120.00609 * 0.27826 * 19 5 4 21 21 C 1.39066 * 120.15717 * 0.02562 * 20 19 5 22 22 O 1.35615 * 119.91778 * 179.97438 * 21 20 19 23 23 C 1.34763 * 116.99941 * 6.07162 * 22 21 20 24 24 H 1.07994 * 120.00072 * 5.40349 * 23 22 21 25 25 C 1.38704 * 119.99701 * 185.40705 * 23 22 21 26 26 N 1.31517 * 119.99770 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00108 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47346 * 90.00149 * 27 25 23 29 29 H 1.48498 * 109.47076 * 209.99940 * 27 25 23 30 30 H 1.48498 * 109.47088 * 329.99885 * 27 25 23 31 31 H 1.09002 * 109.46704 * 60.00099 * 1 2 3 32 32 H 1.08997 * 109.47340 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47322 * 300.00449 * 1 2 3 34 34 H 1.07995 * 120.08338 * 0.04706 * 4 3 2 35 35 H 1.07999 * 120.00369 * 316.47054 * 6 5 4 36 36 H 1.08000 * 119.99974 * 168.71862 * 7 6 5 37 37 H 0.96993 * 120.00137 * 4.71265 * 10 8 7 38 38 H 1.08000 * 120.00998 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.95285 * 180.27604 * 13 12 11 40 40 H 1.08002 * 119.98471 * 180.02562 * 16 14 13 41 41 H 1.08007 * 119.99567 * 180.25611 * 19 5 4 42 42 H 1.07995 * 119.92227 * 180.02562 * 20 19 5 43 43 H 0.96999 * 120.00166 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3693 0.0048 5 6 1.9333 3.6149 -0.0012 6 6 1.1381 4.8506 -0.0019 7 6 1.4888 5.8797 0.7992 8 6 2.4935 5.6839 1.8434 9 8 2.9237 4.5682 2.0726 10 7 2.9434 6.7383 2.5519 11 6 3.9758 6.5674 3.4827 12 6 4.0724 5.3855 4.2044 13 6 5.0947 5.2164 5.1180 14 6 6.0169 6.2289 5.3234 15 9 7.0124 6.0624 6.2213 16 6 5.9205 7.4115 4.6096 17 6 4.9026 7.5833 3.6894 18 9 4.8078 8.7372 2.9931 19 6 3.3321 3.6802 -0.0007 20 6 4.0753 2.5217 -0.0001 21 6 3.4405 1.2844 -0.0005 22 8 4.1776 0.1460 -0.0004 23 6 5.5123 0.2814 0.1271 24 1 5.9412 1.2554 0.3106 25 6 6.3352 -0.8303 0.0226 26 7 7.6378 -0.6981 0.1465 27 14 5.5933 -2.5151 -0.2942 28 1 5.5065 -2.7506 -1.7579 29 1 6.4504 -3.5577 0.3250 30 1 4.2331 -2.5763 0.2985 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2157 2.3144 0.0093 35 1 0.2732 4.9359 -0.6432 36 1 1.0239 6.8461 0.6717 37 1 2.5524 7.6156 2.4171 38 1 3.3515 4.5967 4.0482 39 1 5.1723 4.2950 5.6761 40 1 6.6410 8.1997 4.7711 41 1 3.8278 4.6398 -0.0012 42 1 5.1540 2.5737 0.0007 43 1 8.2133 -1.4756 0.0738 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033470250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:43 Heat of formation + Delta-G solvation = -111.536332 kcal Electronic energy + Delta-G solvation = -33423.906656 eV Core-core repulsion = 28458.268509 eV Total energy + Delta-G solvation = -4965.638147 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.11603 -50.03041 -41.73735 -41.15062 -39.52070 -39.33432 -37.82235 -35.77227 -34.63058 -34.09013 -31.96208 -31.18289 -30.82711 -29.76921 -27.85201 -27.23033 -25.34983 -24.49120 -23.54293 -23.15711 -22.36999 -20.75143 -19.90522 -19.62378 -19.27962 -18.74084 -18.40851 -17.91481 -17.46352 -17.14318 -16.95340 -16.75914 -16.65621 -16.42499 -16.34354 -15.92428 -15.71609 -15.55225 -15.38017 -15.32549 -15.18524 -14.92281 -14.64015 -14.31648 -14.10830 -14.00648 -13.75696 -13.56242 -13.30163 -13.11198 -12.88771 -12.77930 -12.65859 -12.55654 -12.08082 -12.05467 -11.86529 -11.50942 -11.39522 -10.98049 -10.77430 -10.35907 -10.12801 -9.48502 -9.14531 -8.51803 -8.44244 -6.19053 -0.36532 -0.10376 -0.00660 0.60396 1.01878 1.27974 1.33563 1.52318 1.93704 2.12998 2.28338 2.45482 2.56784 2.75149 2.77022 3.05427 3.12128 3.22191 3.51416 3.74392 3.82143 3.92764 4.04702 4.08161 4.19186 4.36325 4.37315 4.48314 4.54946 4.58465 4.62635 4.69885 4.75717 4.82638 4.91240 4.94580 5.03156 5.07978 5.22370 5.24379 5.40958 5.51621 5.59113 5.71686 5.76264 5.85193 6.06982 6.38503 6.65479 6.82789 7.15511 7.60942 8.60090 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.003057 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.866317 B = 9157.676714 C =11642.494645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.346 6.346 3 C 0.039 3.961 4 C -0.130 4.130 5 C -0.117 4.117 6 C 0.014 3.986 7 C -0.224 4.224 8 C 0.529 3.471 9 O -0.536 6.536 10 N -0.657 5.657 11 C 0.109 3.891 12 C -0.079 4.079 13 C -0.145 4.145 14 C 0.101 3.899 15 F -0.137 7.137 16 C -0.165 4.165 17 C 0.098 3.902 18 F -0.125 7.125 19 C -0.023 4.023 20 C -0.216 4.216 21 C 0.104 3.896 22 O -0.235 6.235 23 C -0.396 4.396 24 H 0.077 0.923 25 C 0.013 3.987 26 N -0.921 5.921 27 Si 0.968 3.032 28 H -0.265 1.265 29 H -0.263 1.263 30 H -0.267 1.267 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.429 0.571 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.174 0.826 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.095 19.785 4.945 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C -0.006 4.006 4 C -0.149 4.149 5 C -0.117 4.117 6 C -0.005 4.005 7 C -0.245 4.245 8 C 0.322 3.678 9 O -0.414 6.414 10 N -0.304 5.304 11 C 0.012 3.988 12 C -0.100 4.100 13 C -0.165 4.165 14 C 0.081 3.919 15 F -0.115 7.115 16 C -0.185 4.185 17 C 0.076 3.924 18 F -0.103 7.103 19 C -0.042 4.042 20 C -0.235 4.235 21 C 0.054 3.946 22 O -0.142 6.142 23 C -0.472 4.472 24 H 0.094 0.906 25 C -0.186 4.186 26 N -0.561 5.561 27 Si 0.790 3.210 28 H -0.189 1.189 29 H -0.188 1.188 30 H -0.192 1.192 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.268 0.732 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.191 0.809 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.588 18.526 5.035 25.372 hybrid contribution 0.784 -0.087 0.151 0.804 sum -15.804 18.439 5.186 24.832 Atomic orbital electron populations 1.23292 0.76847 1.05029 1.02270 1.86125 1.23183 1.26687 1.90148 1.18176 0.88271 0.86172 1.07954 1.21193 1.00199 0.89463 1.04028 1.18711 0.92206 0.93732 1.07098 1.22654 0.95264 0.88596 0.93942 1.22979 1.01462 1.02280 0.97747 1.19384 0.82112 0.83624 0.82709 1.91036 1.57876 1.24621 1.67841 1.43349 1.35107 1.13780 1.38171 1.17810 0.91640 0.95260 0.94056 1.21104 0.99000 0.97028 0.92824 1.21336 0.94857 0.99853 1.00409 1.17359 0.88023 0.94989 0.91512 1.91518 1.59001 1.95810 1.65179 1.21034 1.00443 0.99147 0.97891 1.16959 0.95964 0.83453 0.96032 1.91519 1.95681 1.45963 1.77185 1.20664 0.93304 0.95617 0.94574 1.20807 0.99783 0.92008 1.10912 1.19155 0.89400 0.86678 0.99354 1.83535 1.19148 1.28836 1.82725 1.20708 0.78783 0.97507 1.50244 0.90565 1.25228 0.94730 1.02795 0.95805 1.69713 1.03545 1.33115 1.49776 0.85255 0.78756 0.77653 0.79298 1.18943 1.18782 1.19194 0.91042 0.87249 0.91784 0.81547 0.80211 0.79997 0.73162 0.83579 0.83112 0.80900 0.87090 0.87746 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 16 2 O -0.35 -14.01 10.28 -79.05 -0.81 -14.82 16 3 C 0.04 1.65 6.70 22.56 0.15 1.80 16 4 C -0.13 -4.09 8.77 22.65 0.20 -3.89 16 5 C -0.12 -3.49 4.54 -20.14 -0.09 -3.59 16 6 C 0.01 0.25 9.80 23.82 0.23 0.48 16 7 C -0.22 -3.34 9.90 23.61 0.23 -3.10 16 8 C 0.53 12.10 6.61 86.32 0.57 12.67 16 9 O -0.54 -17.78 9.56 -4.50 -0.04 -17.82 16 10 N -0.66 -12.03 5.23 -307.22 -1.61 -13.63 16 11 C 0.11 2.46 6.32 38.16 0.24 2.71 16 12 C -0.08 -2.06 8.70 22.39 0.19 -1.87 16 13 C -0.15 -3.57 10.02 22.30 0.22 -3.35 16 14 C 0.10 2.34 7.30 22.38 0.16 2.51 16 15 F -0.14 -3.30 17.26 44.97 0.78 -2.52 16 16 C -0.17 -3.28 10.00 22.34 0.22 -3.06 16 17 C 0.10 2.01 7.31 22.48 0.16 2.17 16 18 F -0.12 -2.32 16.94 44.97 0.76 -1.56 16 19 C -0.02 -0.87 6.59 22.57 0.15 -0.72 16 20 C -0.22 -10.41 9.11 22.33 0.20 -10.20 16 21 C 0.10 5.34 6.67 22.80 0.15 5.49 16 22 O -0.23 -13.99 8.35 -6.60 -0.06 -14.04 16 23 C -0.40 -24.98 9.89 67.93 0.67 -24.31 16 24 H 0.08 5.06 5.51 -2.91 -0.02 5.04 16 25 C 0.01 0.79 5.49 84.85 0.47 1.26 16 26 N -0.92 -57.36 13.96 21.62 0.30 -57.06 16 27 Si 0.97 48.55 28.62 68.60 1.96 50.51 16 28 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 30 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 31 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 34 H 0.17 3.62 6.28 -2.91 -0.02 3.60 16 35 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.43 4.58 8.62 -92.71 -0.80 3.78 16 38 H 0.15 4.32 6.14 -2.91 -0.02 4.31 16 39 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.11 3.90 7.00 -2.91 -0.02 3.88 16 42 H 0.10 5.61 5.70 -2.91 -0.02 5.59 16 43 H 0.29 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -82.90 378.32 6.86 -76.04 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.31 Total: 18.31 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 5.26 Total: -23.41 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.31 Total: -70.70 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -0.91 Total: -46.68 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 1.54 Total: -4.09 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 1.96 Total: 50.51 kcal Total: -82.90 6.86 -76.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033470250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.491 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds