Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47108 * 179.72578 * 3 2 1 5 5 H 1.48500 * 109.47092 * 299.72012 * 3 2 1 6 6 H 1.48502 * 109.47508 * 59.72417 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.72067 * 2 1 3 8 8 H 1.07997 * 120.00655 * 180.27647 * 7 2 1 9 9 C 1.50702 * 119.99922 * 0.27793 * 7 2 1 10 10 N 1.46501 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.34256 * 125.14395 * 124.71995 * 10 9 7 12 12 C 1.38268 * 107.82703 * 179.84338 * 11 10 9 13 13 C 1.46743 * 126.83641 * 180.15804 * 12 11 10 14 14 C 1.35251 * 120.00078 * 312.71684 * 13 12 11 15 15 C 1.41546 * 120.00061 * 348.71702 * 14 13 12 16 16 O 1.21675 * 119.99610 * 353.14293 * 15 14 13 17 17 O 1.34953 * 119.99665 * 173.14168 * 15 14 13 18 18 C 1.46731 * 106.32326 * 0.40991 * 12 11 10 19 19 C 1.48254 * 126.50860 * 179.70911 * 18 12 11 20 20 C 1.39428 * 120.12008 * 145.01959 * 19 18 12 21 21 C 1.37989 * 119.88978 * 180.02562 * 20 19 18 22 22 C 1.38331 * 120.13787 * 359.97438 * 21 20 19 23 23 C 1.38396 * 120.24762 * 359.97438 * 22 21 20 24 24 Br 1.89100 * 119.94456 * 180.02562 * 23 22 21 25 25 C 1.38110 * 120.10780 * 359.76306 * 23 22 21 26 26 N 1.31372 * 106.98528 * 359.75007 * 18 12 11 27 27 H 0.96996 * 120.00576 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47401 * 299.99632 * 9 7 2 29 29 H 1.09003 * 109.47438 * 59.99893 * 9 7 2 30 30 H 1.07997 * 126.08903 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.99436 * 132.72226 * 13 12 11 32 32 H 1.08001 * 120.00286 * 168.71888 * 14 13 12 33 33 H 0.96706 * 113.99580 * 179.97438 * 17 15 14 34 34 H 1.08004 * 120.05704 * 0.02651 * 20 19 18 35 35 H 1.08003 * 119.92785 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.87585 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.07269 * 180.26379 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8956 2.3934 -1.2159 6 1 1.8855 2.3994 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1942 0.0103 9 6 1.2509 -2.4991 0.0059 10 7 2.2028 -3.6127 0.0120 11 6 2.2263 -4.6044 0.9166 12 6 3.2612 -5.4582 0.5821 13 6 3.6565 -6.6812 1.2901 14 6 3.7930 -6.6696 2.6357 15 6 3.7914 -5.4399 3.3366 16 8 3.7930 -4.3895 2.7223 17 8 3.7880 -5.4325 4.6861 18 6 3.8893 -4.8944 -0.6181 19 6 5.0506 -5.4530 -1.3511 20 6 5.1235 -5.3379 -2.7387 21 6 6.2063 -5.8600 -3.4161 22 6 7.2191 -6.4966 -2.7214 23 6 7.1531 -6.6132 -1.3439 24 35 8.5427 -7.4844 -0.4027 25 6 6.0766 -6.0895 -0.6551 26 7 3.2278 -3.8001 -0.9195 27 1 -0.4851 -0.8400 0.0004 28 1 0.6206 -2.5547 0.8933 29 1 0.6280 -2.5591 -0.8866 30 1 1.5548 -4.7167 1.7550 31 1 3.8385 -7.5906 0.7367 32 1 3.9033 -7.5985 3.1754 33 1 3.7875 -4.5468 5.0746 34 1 4.3337 -4.8408 -3.2824 35 1 6.2636 -5.7708 -4.4909 36 1 8.0648 -6.9033 -3.2558 37 1 6.0278 -6.1771 0.4203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034807865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = 29.462864 kcal Electronic energy + Delta-G solvation = -25009.880118 eV Core-core repulsion = 21186.466145 eV Total energy + Delta-G solvation = -3823.413974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70933 -39.75502 -38.99366 -36.00193 -34.41797 -33.47064 -32.81911 -32.01701 -30.43386 -29.36740 -28.92497 -26.71751 -24.52709 -23.80561 -22.58525 -22.18602 -20.87196 -19.59436 -18.92188 -17.98241 -17.26982 -17.01600 -16.30091 -15.70226 -15.29750 -15.15132 -14.90546 -14.50057 -13.87669 -13.79409 -13.69918 -13.56329 -13.38505 -13.36712 -12.67315 -12.47682 -12.19729 -11.83341 -11.52954 -11.36223 -11.30478 -11.15206 -11.01681 -10.77942 -10.45403 -10.43218 -10.21936 -10.19635 -9.67930 -9.47674 -8.97220 -8.83538 -8.61158 -8.25330 -7.42957 -6.62583 -4.36535 0.83429 1.03300 1.11023 1.47733 2.65881 2.96533 3.21807 3.32386 3.36475 3.38681 3.56377 3.60376 3.77128 4.36987 4.51660 4.72138 4.91592 5.04169 5.13837 5.15322 5.21406 5.27198 5.36845 5.47519 5.59924 5.72948 5.79809 6.02966 6.10070 6.21799 6.25834 6.34072 6.47603 6.53505 6.65136 6.67526 6.68927 7.03504 7.55679 7.63411 8.17746 8.29681 8.33030 8.56511 9.31036 10.75318 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.003081 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.181183 B = 9084.993723 C =10609.234783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 1.081 2.919 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.605 4.605 8 H 0.066 0.934 9 C 0.244 3.756 10 N -0.308 5.308 11 C 0.129 3.871 12 C -0.261 4.261 13 C 0.078 3.922 14 C -0.250 4.250 15 C 0.499 3.501 16 O -0.496 6.496 17 O -0.521 6.521 18 C 0.101 3.899 19 C 0.016 3.984 20 C -0.078 4.078 21 C -0.113 4.113 22 C -0.093 4.093 23 C -0.090 4.090 24 Br -0.056 7.056 25 C -0.072 4.072 26 N -0.257 5.257 27 H 0.267 0.733 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.163 0.837 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.403 0.597 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.012 -18.852 -0.008 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.908 3.092 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.643 4.643 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.084 5.084 11 C -0.023 4.023 12 C -0.273 4.273 13 C 0.058 3.942 14 C -0.270 4.270 15 C 0.345 3.655 16 O -0.385 6.385 17 O -0.331 6.331 18 C -0.064 4.064 19 C 0.013 3.987 20 C -0.098 4.098 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.169 4.169 24 Br 0.030 6.970 25 C -0.093 4.093 26 N -0.078 5.078 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.181 0.819 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.259 0.741 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.069 -16.472 -0.808 21.042 hybrid contribution -0.180 -1.540 0.897 1.791 sum 12.889 -18.012 0.089 22.149 Atomic orbital electron populations 1.70804 1.06777 1.30409 1.46121 1.25918 0.96271 1.02805 0.93029 0.83355 0.74592 0.74029 0.77184 1.21264 1.20956 1.21045 1.22118 0.95513 0.90114 1.56541 0.91596 1.19873 0.86397 0.83034 0.98110 1.48763 1.22703 1.18742 1.18147 1.22579 0.98612 0.87704 0.93381 1.19793 1.04512 1.01821 1.01219 1.21769 0.84704 0.95418 0.92323 1.21128 1.14992 0.96375 0.94509 1.19861 0.74022 0.91025 0.80576 1.91163 1.44970 1.34447 1.67897 1.85061 1.86785 1.38606 1.22679 1.21552 0.96222 0.94380 0.94286 1.17721 0.91584 0.97162 0.92257 1.21468 0.98247 0.96849 0.93212 1.21091 0.93572 0.98271 1.00285 1.21125 0.99308 0.98943 0.91984 1.21579 0.95662 1.04879 0.94814 1.96693 1.46960 1.77566 1.75819 1.21117 0.91611 0.96279 1.00302 1.77305 1.00474 1.16024 1.14021 0.92299 0.93740 0.94480 0.81947 0.84851 0.84567 0.74061 0.84666 0.84814 0.85068 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.27 13.65 55.43 0.76 -25.51 16 2 C 0.02 0.68 5.46 -17.82 -0.10 0.58 16 3 Si 1.08 25.34 29.90 -169.99 -5.08 20.25 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.60 -17.08 9.21 -34.44 -0.32 -17.40 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.24 6.10 5.52 -5.19 -0.03 6.07 16 10 N -0.31 -7.00 3.62 -61.93 -0.22 -7.23 16 11 C 0.13 2.50 8.51 -16.48 -0.14 2.36 16 12 C -0.26 -4.52 4.60 -103.02 -0.47 -5.00 16 13 C 0.08 1.00 8.39 -37.21 -0.31 0.69 16 14 C -0.25 -3.07 9.96 -39.39 -0.39 -3.47 16 15 C 0.50 7.36 7.70 31.99 0.25 7.61 16 16 O -0.50 -9.47 13.09 -19.40 -0.25 -9.72 16 17 O -0.52 -6.32 13.54 -41.19 -0.56 -6.88 16 18 C 0.10 1.91 6.94 -80.52 -0.56 1.35 16 19 C 0.02 0.24 5.84 -104.92 -0.61 -0.37 16 20 C -0.08 -1.07 9.76 -39.23 -0.38 -1.45 16 21 C -0.11 -1.23 10.03 -39.64 -0.40 -1.62 16 22 C -0.09 -0.99 9.78 -39.49 -0.39 -1.37 16 23 C -0.09 -1.07 6.22 -39.57 -0.25 -1.32 16 24 Br -0.06 -0.59 33.69 -68.01 -2.29 -2.88 16 25 C -0.07 -0.98 8.91 -39.21 -0.35 -1.33 16 26 N -0.26 -5.80 12.27 34.60 0.42 -5.37 16 27 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 28 H 0.04 1.09 7.91 -51.93 -0.41 0.68 16 29 H 0.04 0.95 8.01 -51.93 -0.42 0.54 16 30 H 0.16 2.78 7.95 -52.49 -0.42 2.37 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.40 3.61 8.98 45.56 0.41 4.02 16 34 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.85 6.88 -52.48 -0.36 1.48 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -33.41 352.95 -9.17 -42.58 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.81 Total: 4.10 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -4.45 Total: -14.67 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.96 Total: -38.11 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.81 Total: -16.60 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.41 -9.17 -42.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034807865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.042 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds