Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47108 * 179.72578 * 3 2 1 5 5 H 1.48500 * 109.47092 * 299.72012 * 3 2 1 6 6 H 1.48502 * 109.47508 * 59.72417 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.72067 * 2 1 3 8 8 H 1.07997 * 120.00655 * 180.27647 * 7 2 1 9 9 C 1.50702 * 119.99922 * 0.27793 * 7 2 1 10 10 N 1.46501 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.34256 * 125.14395 * 124.71995 * 10 9 7 12 12 C 1.38268 * 107.82703 * 179.84338 * 11 10 9 13 13 C 1.46743 * 126.83641 * 180.15804 * 12 11 10 14 14 C 1.35251 * 120.00078 * 312.71684 * 13 12 11 15 15 C 1.41546 * 120.00061 * 348.71702 * 14 13 12 16 16 O 1.21675 * 119.99610 * 353.14293 * 15 14 13 17 17 O 1.34953 * 119.99665 * 173.14168 * 15 14 13 18 18 C 1.46731 * 106.32326 * 0.40991 * 12 11 10 19 19 C 1.48254 * 126.50860 * 179.70911 * 18 12 11 20 20 C 1.39428 * 120.12008 * 145.01959 * 19 18 12 21 21 C 1.37989 * 119.88978 * 180.02562 * 20 19 18 22 22 C 1.38331 * 120.13787 * 359.97438 * 21 20 19 23 23 C 1.38396 * 120.24762 * 359.97438 * 22 21 20 24 24 Br 1.89100 * 119.94456 * 180.02562 * 23 22 21 25 25 C 1.38110 * 120.10780 * 359.76306 * 23 22 21 26 26 N 1.31372 * 106.98528 * 359.75007 * 18 12 11 27 27 H 0.96996 * 120.00576 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47401 * 299.99632 * 9 7 2 29 29 H 1.09003 * 109.47438 * 59.99893 * 9 7 2 30 30 H 1.07997 * 126.08903 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.99436 * 132.72226 * 13 12 11 32 32 H 1.08001 * 120.00286 * 168.71888 * 14 13 12 33 33 H 0.96706 * 113.99580 * 179.97438 * 17 15 14 34 34 H 1.08004 * 120.05704 * 0.02651 * 20 19 18 35 35 H 1.08003 * 119.92785 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.87585 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.07269 * 180.26379 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8956 2.3934 -1.2159 6 1 1.8855 2.3994 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1942 0.0103 9 6 1.2509 -2.4991 0.0059 10 7 2.2028 -3.6127 0.0120 11 6 2.2263 -4.6044 0.9166 12 6 3.2612 -5.4582 0.5821 13 6 3.6565 -6.6812 1.2901 14 6 3.7930 -6.6696 2.6357 15 6 3.7914 -5.4399 3.3366 16 8 3.7930 -4.3895 2.7223 17 8 3.7880 -5.4325 4.6861 18 6 3.8893 -4.8944 -0.6181 19 6 5.0506 -5.4530 -1.3511 20 6 5.1235 -5.3379 -2.7387 21 6 6.2063 -5.8600 -3.4161 22 6 7.2191 -6.4966 -2.7214 23 6 7.1531 -6.6132 -1.3439 24 35 8.5427 -7.4844 -0.4027 25 6 6.0766 -6.0895 -0.6551 26 7 3.2278 -3.8001 -0.9195 27 1 -0.4851 -0.8400 0.0004 28 1 0.6206 -2.5547 0.8933 29 1 0.6280 -2.5591 -0.8866 30 1 1.5548 -4.7167 1.7550 31 1 3.8385 -7.5906 0.7367 32 1 3.9033 -7.5985 3.1754 33 1 3.7875 -4.5468 5.0746 34 1 4.3337 -4.8408 -3.2824 35 1 6.2636 -5.7708 -4.4909 36 1 8.0648 -6.9033 -3.2558 37 1 6.0278 -6.1771 0.4203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034807865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = 9.062734 kcal Electronic energy + Delta-G solvation = -25010.764734 eV Core-core repulsion = 21186.466145 eV Total energy + Delta-G solvation = -3824.298590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10089 -40.97818 -40.04102 -37.14406 -36.20625 -34.87693 -34.12684 -33.09289 -31.79828 -30.63779 -30.05970 -28.40099 -25.87406 -25.42990 -23.75656 -23.47122 -22.18536 -20.93668 -20.14149 -19.36881 -18.94455 -18.30018 -17.53851 -16.93784 -16.44800 -16.35214 -16.23300 -15.92798 -15.67412 -15.09761 -14.87739 -14.79794 -14.52197 -14.35720 -14.19495 -13.94323 -13.74716 -13.41562 -13.15749 -12.63932 -12.51274 -12.47357 -12.27307 -12.06302 -12.01776 -11.79396 -11.52762 -11.30594 -11.27288 -10.80617 -10.66869 -10.54286 -9.84633 -9.57480 -8.97141 -8.73297 -6.62346 -0.23612 -0.04860 0.13544 0.56461 1.18111 1.44395 1.52186 1.64684 1.71938 1.73727 2.20901 2.41395 2.59714 2.67817 2.93953 3.30063 3.62584 3.86144 3.97084 4.06803 4.12689 4.19345 4.29346 4.34548 4.46199 4.57570 4.58439 4.70117 4.78906 4.91354 5.08038 5.16360 5.25387 5.37826 5.46975 5.51313 5.64874 5.66203 5.75328 5.82420 6.16679 6.33309 6.81927 7.08916 7.12262 8.51399 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.003081 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.181183 B = 9084.993723 C =10609.234783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 1.123 2.877 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.618 4.618 8 H 0.038 0.962 9 C 0.257 3.743 10 N -0.338 5.338 11 C 0.113 3.887 12 C -0.249 4.249 13 C 0.072 3.928 14 C -0.232 4.232 15 C 0.498 3.502 16 O -0.548 6.548 17 O -0.511 6.511 18 C 0.105 3.895 19 C -0.014 4.014 20 C -0.090 4.090 21 C -0.102 4.102 22 C -0.080 4.080 23 C -0.095 4.095 24 Br -0.038 7.038 25 C -0.072 4.072 26 N -0.312 5.312 27 H 0.261 0.739 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.417 0.583 34 H 0.122 0.878 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.385 -21.118 0.151 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.944 3.056 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.656 4.656 8 H 0.057 0.943 9 C 0.138 3.862 10 N -0.114 5.114 11 C -0.037 4.037 12 C -0.261 4.261 13 C 0.053 3.947 14 C -0.251 4.251 15 C 0.346 3.654 16 O -0.440 6.440 17 O -0.322 6.322 18 C -0.061 4.061 19 C -0.017 4.017 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.174 4.174 24 Br 0.047 6.953 25 C -0.093 4.093 26 N -0.133 5.133 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.192 0.808 31 H 0.190 0.810 32 H 0.195 0.805 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.437 -18.788 -0.608 24.324 hybrid contribution -0.758 -1.018 0.924 1.570 sum 14.679 -19.807 0.316 24.655 Atomic orbital electron populations 1.70889 1.07279 1.30154 1.47372 1.27249 0.96450 1.05933 0.91964 0.82837 0.73426 0.70984 0.78370 1.21264 1.19380 1.19354 1.22242 0.94339 0.92139 1.56851 0.94331 1.19409 0.86596 0.83161 0.97080 1.48426 1.23619 1.19487 1.19913 1.22941 0.99817 0.87602 0.93317 1.20234 1.02886 1.02478 1.00465 1.22040 0.85225 0.94766 0.92665 1.21490 1.12774 0.96752 0.94106 1.20391 0.72647 0.91183 0.81152 1.91179 1.47439 1.36435 1.68985 1.85029 1.85985 1.39793 1.21414 1.22213 0.96193 0.93071 0.94647 1.17776 0.91603 0.99294 0.93033 1.21515 0.99230 0.97503 0.92718 1.21410 0.92127 0.96699 1.01821 1.21534 0.99657 0.97263 0.91516 1.21740 0.95503 1.04593 0.95594 1.96716 1.45781 1.77057 1.75723 1.21037 0.91762 0.96362 1.00144 1.77195 1.01961 1.18527 1.15645 0.92955 0.93769 0.96132 0.80793 0.81048 0.80481 0.72482 0.85957 0.81554 0.81917 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.65 21.45 0.29 -54.58 16 2 C -0.02 -0.93 5.46 84.65 0.46 -0.47 16 3 Si 1.12 51.87 29.90 68.60 2.05 53.92 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.62 -36.81 9.21 25.60 0.24 -36.58 16 8 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 9 C 0.26 13.77 5.52 85.63 0.47 14.24 16 10 N -0.34 -16.41 3.62 -349.83 -1.27 -17.68 16 11 C 0.11 4.56 8.51 84.33 0.72 5.28 16 12 C -0.25 -8.71 4.60 -18.83 -0.09 -8.80 16 13 C 0.07 1.72 8.39 23.80 0.20 1.92 16 14 C -0.23 -5.03 9.96 22.40 0.22 -4.81 16 15 C 0.50 14.04 7.70 68.64 0.53 14.57 16 16 O -0.55 -21.24 13.09 19.26 0.25 -20.99 16 17 O -0.51 -11.41 13.54 -58.70 -0.79 -12.21 16 18 C 0.10 4.10 6.94 44.10 0.31 4.41 16 19 C -0.01 -0.44 5.84 -20.06 -0.12 -0.56 16 20 C -0.09 -2.44 9.76 22.50 0.22 -2.22 16 21 C -0.10 -1.95 10.03 22.23 0.22 -1.72 16 22 C -0.08 -1.41 9.78 22.33 0.22 -1.19 16 23 C -0.09 -2.02 6.22 22.28 0.14 -1.88 16 24 Br -0.04 -0.69 33.69 -20.37 -0.69 -1.38 16 25 C -0.07 -1.87 8.91 22.51 0.20 -1.67 16 26 N -0.31 -15.01 12.27 -44.46 -0.55 -15.55 16 27 H 0.26 15.38 7.22 -92.71 -0.67 14.71 16 28 H 0.04 2.32 7.91 -2.39 -0.02 2.30 16 29 H 0.02 1.15 8.01 -2.39 -0.02 1.13 16 30 H 0.17 6.26 7.95 -2.91 -0.02 6.24 16 31 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.42 6.97 8.98 -74.05 -0.67 6.31 16 34 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.13 3.43 6.88 -2.91 -0.02 3.41 16 Total: -1.00 -76.99 352.95 3.81 -73.18 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.56 Total: 14.77 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.94 Total: -19.48 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.52 Total: -87.82 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.54 Total: -33.20 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.38 kcal Total: -76.99 3.81 -73.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034807865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.245 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds