Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.62550 * 2 1 4 4 C 1.53237 * 109.62590 * 239.61895 * 2 1 3 5 5 C 1.52958 * 109.40093 * 185.66037 * 4 2 1 6 6 C 1.52956 * 109.82115 * 63.59994 * 5 4 2 7 7 C 1.53231 * 109.40064 * 296.39981 * 6 5 4 8 8 H 1.09001 * 109.62985 * 294.91026 * 7 6 5 9 9 C 1.53001 * 109.62272 * 174.34396 * 7 6 5 10 10 C 1.50701 * 109.47226 * 175.00143 * 9 7 6 11 11 H 1.08004 * 119.99742 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99624 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00190 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47176 * 89.99866 * 14 12 10 16 16 H 1.48499 * 109.47316 * 209.99926 * 14 12 10 17 17 H 1.48497 * 109.47353 * 330.00137 * 14 12 10 18 18 C 1.51268 * 108.53847 * 54.63026 * 7 6 5 19 19 N 1.28015 * 120.85161 * 128.63163 * 18 7 6 20 20 N 1.40100 * 120.00035 * 151.19866 * 19 18 7 21 21 C 1.39603 * 119.99872 * 173.14899 * 20 19 18 22 22 C 1.38990 * 120.07983 * 353.57154 * 21 20 19 23 23 C 1.38066 * 119.91871 * 179.97438 * 22 21 20 24 24 C 1.38324 * 120.08230 * 0.02562 * 23 22 21 25 25 N 1.48025 * 119.92241 * 180.02562 * 24 23 22 26 26 O 1.21799 * 119.99534 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00293 * 180.02562 * 25 24 23 28 28 C 1.38275 * 120.15793 * 359.97438 * 24 23 22 29 29 C 1.38110 * 120.08112 * 359.74389 * 28 24 23 30 30 N 1.48026 * 120.04407 * 180.25694 * 29 28 24 31 31 O 1.21798 * 119.99985 * 5.55744 * 30 29 28 32 32 O 1.21794 * 120.00300 * 185.55804 * 30 29 28 33 33 H 1.09005 * 109.47260 * 210.83627 * 1 2 3 34 34 H 1.08995 * 109.47439 * 330.84322 * 1 2 3 35 35 H 1.09001 * 109.47204 * 90.84230 * 1 2 3 36 36 H 1.09002 * 109.48226 * 65.67787 * 4 2 1 37 37 H 1.09002 * 109.49282 * 305.64517 * 4 2 1 38 38 H 1.09001 * 109.41648 * 303.48761 * 5 4 2 39 39 H 1.09001 * 109.35174 * 183.67160 * 5 4 2 40 40 H 1.08997 * 109.48279 * 176.42206 * 6 5 4 41 41 H 1.09000 * 109.49336 * 56.38411 * 6 5 4 42 42 H 1.09003 * 109.47200 * 294.99812 * 9 7 6 43 43 H 1.08998 * 109.47411 * 55.00013 * 9 7 6 44 44 H 0.97007 * 119.99573 * 179.97438 * 13 12 10 45 45 H 0.97002 * 120.00373 * 353.15115 * 20 19 18 46 46 H 1.07995 * 120.04338 * 359.95893 * 22 21 20 47 47 H 1.07997 * 119.95932 * 180.02562 * 23 22 21 48 48 H 1.07997 * 119.96125 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0266 0.0000 4 6 2.0447 -0.7300 -1.2451 5 6 3.5676 -0.8509 -1.1700 6 6 3.9608 -1.7146 0.0295 7 6 3.5182 -1.0217 1.3225 8 1 4.0711 -0.0906 1.4468 9 6 3.7813 -1.9431 2.5153 10 6 3.4600 -1.2136 3.7942 11 1 3.1041 -0.1944 3.7597 12 6 3.6203 -1.8471 5.0083 13 7 4.0532 -3.0882 5.0502 14 14 3.2227 -0.9425 6.5935 15 1 1.7975 -1.1653 6.9465 16 1 4.0890 -1.4538 7.6859 17 1 3.4654 0.5108 6.4084 18 6 2.0380 -0.7248 1.2267 19 7 1.2358 -1.0781 2.1597 20 7 0.0685 -0.3405 2.3966 21 6 -0.8758 -0.8039 3.3144 22 6 -0.7265 -2.0582 3.8943 23 6 -1.6622 -2.5130 4.8020 24 6 -2.7475 -1.7223 5.1340 25 7 -3.7482 -2.2132 6.1080 26 8 -3.6156 -3.3124 6.6157 27 8 -4.7046 -1.5183 6.4011 28 6 -2.8993 -0.4739 4.5591 29 6 -1.9642 -0.0100 3.6547 30 7 -2.1245 1.3288 3.0440 31 8 -3.0238 2.0628 3.4130 32 8 -1.3572 1.6966 2.1726 33 1 -0.3634 -0.8824 0.5268 34 1 -0.3634 0.8974 0.5006 35 1 -0.3634 -0.0151 -1.0276 36 1 1.7681 -0.1672 -2.1368 37 1 1.6028 -1.7253 -1.2919 38 1 4.0049 0.1415 -1.0608 39 1 3.9389 -1.3116 -2.0855 40 1 5.0423 -1.8497 0.0413 41 1 3.4737 -2.6868 -0.0471 42 1 3.1525 -2.8299 2.4351 43 1 4.8299 -2.2406 2.5203 44 1 4.1664 -3.5338 5.9044 45 1 -0.0836 0.4922 1.9228 46 1 0.1202 -2.6764 3.6350 47 1 -1.5466 -3.4873 5.2533 48 1 -3.7476 0.1409 4.8209 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034871744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = 83.865699 kcal Electronic energy + Delta-G solvation = -36116.054911 eV Core-core repulsion = 31372.677482 eV Total energy + Delta-G solvation = -4743.377428 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.64930 -42.14154 -40.20793 -39.33819 -37.18240 -36.59640 -36.22345 -34.18774 -33.35544 -32.34982 -32.18929 -30.38268 -29.24412 -27.01390 -26.87733 -26.23961 -24.80491 -23.47440 -22.97603 -22.36947 -21.19430 -20.54181 -20.20424 -19.34438 -18.97195 -18.52935 -18.10795 -17.89516 -17.78131 -17.54608 -16.68822 -16.36008 -15.35814 -15.10101 -14.75423 -14.65589 -14.46843 -14.24709 -13.92694 -13.51682 -13.32595 -13.22804 -12.59871 -12.57891 -12.40803 -12.12385 -11.94250 -11.88079 -11.64331 -11.60566 -11.56924 -11.42009 -11.26273 -11.22449 -11.18532 -11.17602 -10.97758 -10.75816 -10.64117 -10.55404 -10.20898 -10.12237 -10.07355 -9.80723 -9.17980 -9.12466 -8.44955 -7.80157 -6.09254 -4.06939 -0.40269 -0.25185 0.91807 0.99399 1.18184 1.43265 1.87498 2.59665 2.99884 3.20342 3.29622 3.31672 3.83888 4.16516 4.22270 4.30996 4.36070 4.41822 4.58001 4.64886 4.73532 5.00295 5.05483 5.11444 5.26006 5.28901 5.30653 5.35668 5.44539 5.50744 5.52146 5.62051 5.70654 5.81098 5.88637 5.91030 6.02149 6.09322 6.14956 6.15482 6.28162 6.36141 6.44512 6.57733 6.61117 6.76550 7.38402 7.49912 7.60679 7.61807 7.86850 8.23681 8.28598 8.93233 9.53757 11.02038 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.004067 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.771714 B = 6883.641064 C = 9127.811114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.028 4.028 8 H 0.093 0.907 9 C 0.032 3.968 10 C -0.491 4.491 11 H 0.047 0.953 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.141 3.859 19 N -0.218 5.218 20 N -0.541 5.541 21 C 0.337 3.663 22 C -0.148 4.148 23 C 0.017 3.983 24 C -0.108 4.108 25 N 0.044 4.956 26 O -0.160 6.160 27 O -0.170 6.170 28 C 0.055 3.945 29 C -0.138 4.138 30 N 0.058 4.942 31 O -0.139 6.139 32 O -0.207 6.207 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.414 0.586 46 H 0.185 0.815 47 H 0.169 0.831 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 3.399 -11.017 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.138 4.138 5 C -0.161 4.161 6 C -0.153 4.153 7 C -0.048 4.048 8 H 0.111 0.889 9 C -0.005 4.005 10 C -0.530 4.530 11 H 0.066 0.934 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.704 3.296 15 H -0.210 1.210 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.050 4.050 19 N -0.021 5.021 20 N -0.266 5.266 21 C 0.217 3.783 22 C -0.170 4.170 23 C -0.005 4.005 24 C -0.196 4.196 25 N 0.561 4.439 26 O -0.375 6.375 27 O -0.383 6.383 28 C 0.035 3.965 29 C -0.231 4.231 30 N 0.568 4.432 31 O -0.361 6.361 32 O -0.402 6.402 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.273 0.727 46 H 0.202 0.798 47 H 0.186 0.814 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.953 2.340 -10.539 12.841 hybrid contribution -0.718 1.622 0.357 1.810 sum -7.671 3.962 -10.182 13.350 Atomic orbital electron populations 1.22605 0.95235 1.02595 1.03392 1.21156 0.95203 1.00932 0.94719 0.89088 1.21539 0.96430 1.00416 0.95455 1.21591 0.94980 1.00775 0.98745 1.21723 1.01480 0.98899 0.93230 1.20683 0.85207 1.01520 0.97428 0.88913 1.19106 0.97373 0.94177 0.89873 1.20954 1.42696 0.98707 0.90654 0.93443 1.24824 0.95648 0.94755 0.98487 1.69927 1.46762 1.11152 1.25439 0.86863 0.78303 0.80150 0.84289 1.20960 1.21107 1.20242 1.25742 0.96503 0.92864 0.89935 1.75053 0.90404 1.15091 1.21566 1.48393 1.18016 1.23095 1.37121 1.17639 0.83580 0.91173 0.85953 1.21093 1.02001 0.94757 0.99179 1.21169 0.88253 0.99778 0.91263 1.20437 0.96759 0.98072 1.04284 1.43243 1.00626 1.00269 0.99757 1.94552 1.81901 1.07011 1.54045 1.94537 1.21868 1.55925 1.65992 1.20236 0.96365 0.92712 0.87222 1.20040 1.03691 0.87417 1.11916 1.43155 0.99278 1.01886 0.98872 1.94551 1.25396 1.51158 1.64989 1.94144 1.41644 1.78389 1.25990 0.91835 0.90629 0.91285 0.91440 0.91694 0.91732 0.91873 0.91070 0.91731 0.95536 0.95880 0.93049 0.72696 0.79811 0.81403 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 7.85 37.16 0.29 -1.80 16 2 C -0.10 -1.17 2.90 -91.37 -0.27 -1.43 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.10 -1.00 5.05 -26.63 -0.13 -1.13 16 5 C -0.12 -1.24 5.81 -26.78 -0.16 -1.39 16 6 C -0.11 -1.48 5.23 -26.63 -0.14 -1.62 16 7 C -0.03 -0.45 2.42 -91.37 -0.22 -0.67 16 8 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 9 C 0.03 0.69 4.12 -27.88 -0.11 0.57 16 10 C -0.49 -12.13 7.55 -34.44 -0.26 -12.39 16 11 H 0.05 1.19 7.53 -52.48 -0.40 0.80 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 14 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.14 2.18 5.86 -78.35 -0.46 1.72 16 19 N -0.22 -3.76 7.48 35.87 0.27 -3.49 16 20 N -0.54 -8.48 4.08 32.42 0.13 -8.35 16 21 C 0.34 5.11 6.70 -83.78 -0.56 4.55 16 22 C -0.15 -2.17 9.51 -39.37 -0.37 -2.55 16 23 C 0.02 0.22 9.55 -39.61 -0.38 -0.16 16 24 C -0.11 -1.48 6.85 -79.90 -0.55 -2.03 16 25 N 0.04 0.65 4.45 33.99 0.15 0.80 16 26 O -0.16 -2.46 18.44 -29.46 -0.54 -3.00 16 27 O -0.17 -2.57 18.44 -29.46 -0.54 -3.11 16 28 C 0.06 0.72 9.06 -39.61 -0.36 0.36 16 29 C -0.14 -1.96 6.86 -79.73 -0.55 -2.51 16 30 N 0.06 0.85 4.45 34.07 0.15 1.00 16 31 O -0.14 -2.03 18.46 -29.46 -0.54 -2.58 16 32 O -0.21 -3.09 14.16 -29.46 -0.42 -3.51 16 33 H 0.06 0.83 5.96 -51.93 -0.31 0.52 16 34 H 0.08 0.91 4.69 -51.93 -0.24 0.67 16 35 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.41 6.08 2.22 -182.95 -0.41 5.67 16 46 H 0.18 2.94 7.38 -52.49 -0.39 2.55 16 47 H 0.17 1.93 7.60 -52.49 -0.40 1.53 16 48 H 0.18 2.01 7.17 -52.49 -0.38 1.63 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -28.11 394.93 -10.28 -38.39 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.28 Total: 4.74 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -4.32 Total: -18.90 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 1.44 Total: -33.85 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -2.05 Total: -12.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.11 -10.28 -38.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034871744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.256 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds