Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.62550 * 2 1 4 4 C 1.53237 * 109.62590 * 239.61895 * 2 1 3 5 5 C 1.52958 * 109.40093 * 185.66037 * 4 2 1 6 6 C 1.52956 * 109.82115 * 63.59994 * 5 4 2 7 7 C 1.53231 * 109.40064 * 296.39981 * 6 5 4 8 8 H 1.09001 * 109.62985 * 294.91026 * 7 6 5 9 9 C 1.53001 * 109.62272 * 174.34396 * 7 6 5 10 10 C 1.50701 * 109.47226 * 175.00143 * 9 7 6 11 11 H 1.08004 * 119.99742 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99624 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00190 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47176 * 89.99866 * 14 12 10 16 16 H 1.48499 * 109.47316 * 209.99926 * 14 12 10 17 17 H 1.48497 * 109.47353 * 330.00137 * 14 12 10 18 18 C 1.51268 * 108.53847 * 54.63026 * 7 6 5 19 19 N 1.28015 * 120.85161 * 128.63163 * 18 7 6 20 20 N 1.40100 * 120.00035 * 151.19866 * 19 18 7 21 21 C 1.39603 * 119.99872 * 173.14899 * 20 19 18 22 22 C 1.38990 * 120.07983 * 353.57154 * 21 20 19 23 23 C 1.38066 * 119.91871 * 179.97438 * 22 21 20 24 24 C 1.38324 * 120.08230 * 0.02562 * 23 22 21 25 25 N 1.48025 * 119.92241 * 180.02562 * 24 23 22 26 26 O 1.21799 * 119.99534 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00293 * 180.02562 * 25 24 23 28 28 C 1.38275 * 120.15793 * 359.97438 * 24 23 22 29 29 C 1.38110 * 120.08112 * 359.74389 * 28 24 23 30 30 N 1.48026 * 120.04407 * 180.25694 * 29 28 24 31 31 O 1.21798 * 119.99985 * 5.55744 * 30 29 28 32 32 O 1.21794 * 120.00300 * 185.55804 * 30 29 28 33 33 H 1.09005 * 109.47260 * 210.83627 * 1 2 3 34 34 H 1.08995 * 109.47439 * 330.84322 * 1 2 3 35 35 H 1.09001 * 109.47204 * 90.84230 * 1 2 3 36 36 H 1.09002 * 109.48226 * 65.67787 * 4 2 1 37 37 H 1.09002 * 109.49282 * 305.64517 * 4 2 1 38 38 H 1.09001 * 109.41648 * 303.48761 * 5 4 2 39 39 H 1.09001 * 109.35174 * 183.67160 * 5 4 2 40 40 H 1.08997 * 109.48279 * 176.42206 * 6 5 4 41 41 H 1.09000 * 109.49336 * 56.38411 * 6 5 4 42 42 H 1.09003 * 109.47200 * 294.99812 * 9 7 6 43 43 H 1.08998 * 109.47411 * 55.00013 * 9 7 6 44 44 H 0.97007 * 119.99573 * 179.97438 * 13 12 10 45 45 H 0.97002 * 120.00373 * 353.15115 * 20 19 18 46 46 H 1.07995 * 120.04338 * 359.95893 * 22 21 20 47 47 H 1.07997 * 119.95932 * 180.02562 * 23 22 21 48 48 H 1.07997 * 119.96125 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0266 0.0000 4 6 2.0447 -0.7300 -1.2451 5 6 3.5676 -0.8509 -1.1700 6 6 3.9608 -1.7146 0.0295 7 6 3.5182 -1.0217 1.3225 8 1 4.0711 -0.0906 1.4468 9 6 3.7813 -1.9431 2.5153 10 6 3.4600 -1.2136 3.7942 11 1 3.1041 -0.1944 3.7597 12 6 3.6203 -1.8471 5.0083 13 7 4.0532 -3.0882 5.0502 14 14 3.2227 -0.9425 6.5935 15 1 1.7975 -1.1653 6.9465 16 1 4.0890 -1.4538 7.6859 17 1 3.4654 0.5108 6.4084 18 6 2.0380 -0.7248 1.2267 19 7 1.2358 -1.0781 2.1597 20 7 0.0685 -0.3405 2.3966 21 6 -0.8758 -0.8039 3.3144 22 6 -0.7265 -2.0582 3.8943 23 6 -1.6622 -2.5130 4.8020 24 6 -2.7475 -1.7223 5.1340 25 7 -3.7482 -2.2132 6.1080 26 8 -3.6156 -3.3124 6.6157 27 8 -4.7046 -1.5183 6.4011 28 6 -2.8993 -0.4739 4.5591 29 6 -1.9642 -0.0100 3.6547 30 7 -2.1245 1.3288 3.0440 31 8 -3.0238 2.0628 3.4130 32 8 -1.3572 1.6966 2.1726 33 1 -0.3634 -0.8824 0.5268 34 1 -0.3634 0.8974 0.5006 35 1 -0.3634 -0.0151 -1.0276 36 1 1.7681 -0.1672 -2.1368 37 1 1.6028 -1.7253 -1.2919 38 1 4.0049 0.1415 -1.0608 39 1 3.9389 -1.3116 -2.0855 40 1 5.0423 -1.8497 0.0413 41 1 3.4737 -2.6868 -0.0471 42 1 3.1525 -2.8299 2.4351 43 1 4.8299 -2.2406 2.5203 44 1 4.1664 -3.5338 5.9044 45 1 -0.0836 0.4922 1.9228 46 1 0.1202 -2.6764 3.6350 47 1 -1.5466 -3.4873 5.2533 48 1 -3.7476 0.1409 4.8209 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034871744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = 73.426716 kcal Electronic energy + Delta-G solvation = -36116.507579 eV Core-core repulsion = 31372.677482 eV Total energy + Delta-G solvation = -4743.830097 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.80492 -43.31078 -41.34901 -40.45689 -38.33413 -37.78052 -37.36569 -35.67615 -34.46310 -33.87643 -33.41993 -31.52916 -30.54727 -28.29093 -28.14576 -27.43353 -25.96753 -24.80956 -24.34997 -23.51742 -22.22746 -21.75748 -21.36390 -20.50281 -20.14483 -19.69591 -19.27339 -19.05531 -18.89776 -18.71216 -18.34029 -17.74667 -16.57616 -16.47820 -16.22995 -15.85848 -15.58196 -15.26039 -15.03673 -14.72189 -14.55004 -14.26986 -14.02627 -13.68322 -13.67034 -13.41210 -13.17192 -13.10226 -12.94630 -12.84037 -12.79906 -12.71592 -12.64866 -12.55103 -12.42691 -12.37596 -12.30391 -12.20632 -11.94443 -11.72708 -11.44128 -11.39455 -11.27430 -11.22222 -10.77037 -10.51443 -10.38770 -8.99081 -8.12915 -6.12953 -1.53679 -1.40187 -0.23394 -0.14986 0.01415 0.28250 0.69605 1.27094 1.33072 1.37561 1.44805 1.85118 2.37990 2.70901 3.06593 3.11588 3.20963 3.23259 3.36314 3.49066 3.70103 3.84739 3.98556 4.03418 4.13756 4.26464 4.29821 4.37367 4.38697 4.46786 4.50740 4.61320 4.72549 4.74655 4.89508 4.98081 5.03155 5.05483 5.09373 5.16185 5.20539 5.27958 5.33801 5.38442 5.51138 5.57483 5.60631 5.80630 5.92596 6.23244 6.31984 6.40526 6.95992 7.07184 7.49739 8.98933 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.004067 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.771714 B = 6883.641064 C = 9127.811114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 H 0.106 0.894 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.025 4.025 8 H 0.098 0.902 9 C 0.040 3.960 10 C -0.480 4.480 11 H 0.042 0.958 12 C 0.020 3.980 13 N -0.926 5.926 14 Si 0.920 3.080 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.141 3.859 19 N -0.258 5.258 20 N -0.539 5.539 21 C 0.328 3.672 22 C -0.160 4.160 23 C 0.029 3.971 24 C -0.110 4.110 25 N 0.045 4.955 26 O -0.176 6.176 27 O -0.167 6.167 28 C 0.070 3.930 29 C -0.139 4.139 30 N 0.057 4.943 31 O -0.132 6.132 32 O -0.215 6.215 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.258 0.742 45 H 0.417 0.583 46 H 0.167 0.833 47 H 0.183 0.817 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 5.003 -12.680 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.115 4.115 3 H 0.124 0.876 4 C -0.134 4.134 5 C -0.153 4.153 6 C -0.149 4.149 7 C -0.046 4.046 8 H 0.116 0.884 9 C 0.002 3.998 10 C -0.519 4.519 11 H 0.060 0.940 12 C -0.178 4.178 13 N -0.568 5.568 14 Si 0.748 3.252 15 H -0.210 1.210 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.050 4.050 19 N -0.062 5.062 20 N -0.265 5.265 21 C 0.207 3.793 22 C -0.183 4.183 23 C 0.008 3.992 24 C -0.198 4.198 25 N 0.561 4.439 26 O -0.387 6.387 27 O -0.382 6.382 28 C 0.049 3.951 29 C -0.232 4.232 30 N 0.567 4.433 31 O -0.356 6.356 32 O -0.408 6.408 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.277 0.723 46 H 0.184 0.816 47 H 0.201 0.799 48 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.747 3.934 -12.213 14.989 hybrid contribution -0.497 1.137 0.854 1.507 sum -8.244 5.071 -11.359 14.924 Atomic orbital electron populations 1.22542 0.94989 1.01386 1.04465 1.21236 0.95336 1.01428 0.93545 0.87600 1.21574 0.96181 1.00302 0.95376 1.21558 0.95134 1.00815 0.97837 1.21676 1.01582 0.98740 0.92867 1.20544 0.86524 1.00632 0.96855 0.88441 1.18914 0.95141 0.94214 0.91483 1.21204 1.40710 0.98288 0.91702 0.93981 1.25372 0.96272 0.95298 1.00839 1.70019 1.48746 1.12335 1.25681 0.86157 0.77917 0.79232 0.81929 1.20969 1.21167 1.20103 1.25902 0.95660 0.92639 0.90843 1.74937 0.91639 1.16393 1.23185 1.48281 1.17767 1.23078 1.37389 1.17793 0.83928 0.91478 0.86058 1.20908 1.02165 0.94870 1.00311 1.21278 0.87491 1.00223 0.90210 1.20410 0.96635 0.98383 1.04356 1.43323 1.00671 1.00163 0.99756 1.94559 1.82186 1.07334 1.54647 1.94528 1.21982 1.55790 1.65906 1.20393 0.96284 0.92415 0.85991 1.20015 1.03673 0.87271 1.12230 1.43176 0.99284 1.01957 0.98887 1.94542 1.25202 1.51107 1.64753 1.94147 1.41858 1.78504 1.26261 0.93663 0.91168 0.88978 0.88475 0.92326 0.90522 0.89598 0.90728 0.92746 0.98033 0.98194 0.93315 0.72273 0.81560 0.79949 0.78628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 7.85 71.98 0.56 -3.18 16 2 C -0.09 -2.02 2.90 -11.28 -0.03 -2.05 16 3 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.10 -1.59 5.05 30.66 0.15 -1.44 16 5 C -0.12 -1.94 5.81 30.57 0.18 -1.77 16 6 C -0.11 -2.71 5.23 30.66 0.16 -2.55 16 7 C -0.03 -0.81 2.42 -11.28 -0.03 -0.84 16 8 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 9 C 0.04 1.78 4.12 29.85 0.12 1.90 16 10 C -0.48 -24.22 7.55 25.60 0.19 -24.03 16 11 H 0.04 2.14 7.53 -2.91 -0.02 2.11 16 12 C 0.02 1.05 5.46 84.65 0.46 1.51 16 13 N -0.93 -52.47 13.29 21.45 0.28 -52.18 16 14 Si 0.92 43.42 29.54 68.60 2.03 45.45 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 C 0.14 4.27 5.86 46.89 0.28 4.54 16 19 N -0.26 -9.01 7.48 -40.33 -0.30 -9.31 16 20 N -0.54 -16.88 4.08 -51.34 -0.21 -17.09 16 21 C 0.33 9.92 6.70 38.25 0.26 10.18 16 22 C -0.16 -4.78 9.51 22.41 0.21 -4.57 16 23 C 0.03 0.76 9.55 22.25 0.21 0.97 16 24 C -0.11 -2.89 6.85 36.40 0.25 -2.64 16 25 N 0.05 1.28 4.45 -46.39 -0.21 1.07 16 26 O -0.18 -5.25 18.44 18.89 0.35 -4.90 16 27 O -0.17 -4.77 18.44 18.89 0.35 -4.43 16 28 C 0.07 1.70 9.06 22.25 0.20 1.90 16 29 C -0.14 -3.82 6.86 36.51 0.25 -3.57 16 30 N 0.06 1.59 4.45 -46.12 -0.21 1.39 16 31 O -0.13 -3.62 18.46 18.89 0.35 -3.27 16 32 O -0.21 -6.16 14.16 18.89 0.27 -5.89 16 33 H 0.04 1.14 5.96 -2.38 -0.01 1.13 16 34 H 0.07 1.58 4.69 -2.39 -0.01 1.56 16 35 H 0.09 1.51 7.84 -2.39 -0.02 1.49 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.00 0.06 8.05 -2.39 -0.02 0.04 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 45 H 0.42 12.00 2.22 -218.89 -0.49 11.52 16 46 H 0.17 5.64 7.38 -2.91 -0.02 5.62 16 47 H 0.18 4.14 7.60 -2.91 -0.02 4.12 16 48 H 0.20 3.98 7.17 -2.91 -0.02 3.96 16 Total: -1.00 -61.43 394.93 6.67 -54.75 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.54 Total: 20.03 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.43 Total: -25.62 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -0.64 Total: -76.12 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 1.31 Total: -18.49 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -61.43 6.67 -54.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034871744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.180 kcal (2) G-P(sol) polarization free energy of solvation -61.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds