Wall clock time and date at job start Tue Mar 31 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.62273 * 2 1 4 4 C 1.53230 * 109.78249 * 120.47859 * 2 1 3 5 5 C 1.52961 * 109.41628 * 65.18816 * 4 2 1 6 6 C 1.52954 * 109.81708 * 63.57423 * 5 4 2 7 7 C 1.53224 * 109.42183 * 296.42324 * 6 5 4 8 8 H 1.08999 * 109.62608 * 294.90871 * 7 6 5 9 9 C 1.52996 * 109.62922 * 174.52623 * 7 6 5 10 10 C 1.50701 * 109.47253 * 175.00274 * 9 7 6 11 11 H 1.08000 * 119.99455 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00178 * 180.02562 * 10 9 7 13 13 N 1.31522 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00326 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46801 * 59.99955 * 14 12 10 16 16 H 1.48494 * 109.47520 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47258 * 300.00369 * 14 12 10 18 18 C 1.51267 * 109.62510 * 239.61814 * 2 1 3 19 19 N 1.28017 * 120.84714 * 111.42303 * 18 2 1 20 20 N 1.40100 * 119.99996 * 354.38092 * 19 18 2 21 21 C 1.39612 * 119.99790 * 184.06084 * 20 19 18 22 22 C 1.38976 * 120.08024 * 3.59920 * 21 20 19 23 23 C 1.38065 * 119.92179 * 179.74413 * 22 21 20 24 24 C 1.38324 * 120.07561 * 0.53318 * 23 22 21 25 25 N 1.48028 * 119.91989 * 179.76566 * 24 23 22 26 26 O 1.21796 * 119.99957 * 179.97438 * 25 24 23 27 27 O 1.21801 * 119.99852 * 359.97396 * 25 24 23 28 28 C 1.38273 * 120.16128 * 359.73599 * 24 23 22 29 29 C 1.38112 * 120.07978 * 359.97438 * 28 24 23 30 30 N 1.48024 * 120.04341 * 180.02562 * 29 28 24 31 31 O 1.21792 * 120.00398 * 142.01258 * 30 29 28 32 32 O 1.21809 * 119.99753 * 322.01135 * 30 29 28 33 33 H 1.08999 * 109.46818 * 180.38145 * 1 2 3 34 34 H 1.08994 * 109.47500 * 300.37792 * 1 2 3 35 35 H 1.08995 * 109.46928 * 60.38258 * 1 2 3 36 36 H 1.08993 * 109.48477 * 185.16169 * 4 2 1 37 37 H 1.09009 * 109.48229 * 305.19066 * 4 2 1 38 38 H 1.09001 * 109.39899 * 303.47699 * 5 4 2 39 39 H 1.09000 * 109.42420 * 183.69131 * 5 4 2 40 40 H 1.09007 * 109.48139 * 176.43574 * 6 5 4 41 41 H 1.09004 * 109.47784 * 56.41480 * 6 5 4 42 42 H 1.08998 * 109.47035 * 295.00341 * 9 7 6 43 43 H 1.08997 * 109.47273 * 54.99872 * 9 7 6 44 44 H 0.96993 * 120.00302 * 179.97438 * 13 12 10 45 45 H 0.96999 * 119.99925 * 4.06017 * 20 19 18 46 46 H 1.08004 * 120.04236 * 359.97438 * 22 21 20 47 47 H 1.08004 * 119.96561 * 180.24698 * 23 22 21 48 48 H 1.08003 * 119.96474 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0486 -0.7313 1.2426 5 6 1.6511 -2.2065 1.1674 6 6 2.3285 -2.8654 -0.0353 7 6 1.8204 -2.2144 -1.3260 8 1 0.7573 -2.4224 -1.4471 9 6 2.5929 -2.7738 -2.5223 10 6 2.0093 -2.2245 -3.7985 11 1 1.1710 -1.5447 -3.7601 12 6 2.5449 -2.5905 -5.0151 13 7 3.5655 -3.4188 -5.0618 14 14 1.8211 -1.9102 -6.5970 15 1 1.9234 -0.4287 -6.5911 16 1 2.5701 -2.4539 -7.7582 17 1 0.3938 -2.3073 -6.6993 18 6 2.0381 -0.7206 -1.2291 19 7 2.6367 -0.0825 -2.1637 20 7 2.7249 1.3148 -2.1126 21 6 3.3024 2.0169 -3.1722 22 6 3.7223 1.3390 -4.3104 23 6 4.2881 2.0372 -5.3585 24 6 4.4474 3.4085 -5.2720 25 7 5.0592 4.1531 -6.3957 26 8 5.1997 5.3606 -6.3213 27 8 5.4222 3.5581 -7.3946 28 6 4.0359 4.0857 -4.1389 29 6 3.4635 3.3945 -3.0890 30 7 3.0228 4.1203 -1.8765 31 8 1.9997 3.7874 -1.3056 32 8 3.6833 5.0505 -1.4498 33 1 -0.3633 -1.0276 0.0068 34 1 -0.3634 0.5196 0.8865 35 1 -0.3633 0.5079 -0.8934 36 1 3.1346 -0.6495 1.2859 37 1 1.6144 -0.2827 2.1362 38 1 0.5691 -2.2849 1.0617 39 1 1.9625 -2.7129 2.0810 40 1 2.0925 -3.9295 -0.0475 41 1 3.4080 -2.7333 0.0381 42 1 3.6405 -2.4823 -2.4468 43 1 2.5179 -3.8612 -2.5270 44 1 3.9421 -3.6766 -5.9177 45 1 2.3847 1.7944 -1.3412 46 1 3.6027 0.2676 -4.3766 47 1 4.6111 1.5116 -6.2450 48 1 4.1613 5.1565 -4.0749 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034871745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:41 Heat of formation + Delta-G solvation = 51.106420 kcal Electronic energy + Delta-G solvation = -35820.792253 eV Core-core repulsion = 31075.994275 eV Total energy + Delta-G solvation = -4744.797977 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.64425 -42.16714 -40.09306 -39.39722 -37.03977 -36.62173 -36.32057 -34.15781 -33.31789 -32.32925 -32.15075 -30.55766 -29.06394 -27.01614 -26.93602 -26.00014 -25.19467 -23.41524 -22.95656 -22.55569 -21.42157 -20.56955 -20.18898 -19.26803 -18.89754 -18.50847 -18.23660 -17.93700 -17.60927 -17.43990 -16.53310 -16.34221 -15.45886 -15.08021 -14.82987 -14.60870 -14.49922 -14.30063 -13.87774 -13.62819 -13.25226 -13.02976 -12.65697 -12.59774 -12.43876 -12.40986 -11.93384 -11.88480 -11.64835 -11.63193 -11.50008 -11.45706 -11.28364 -11.24822 -11.20069 -11.19672 -10.97447 -10.75950 -10.65341 -10.57872 -10.25261 -10.17388 -9.99159 -9.87809 -9.21551 -9.12046 -8.47330 -8.11314 -6.10694 -4.09586 -0.33848 -0.26427 0.78787 0.89307 1.14364 1.39283 2.16385 2.37406 2.92233 3.18317 3.27939 3.29884 3.80985 4.13669 4.19195 4.27057 4.33075 4.44424 4.51682 4.61530 4.81540 4.94137 5.04241 5.15727 5.25322 5.28138 5.33862 5.36682 5.48858 5.51957 5.64259 5.66010 5.71968 5.84271 5.89579 5.92696 6.00382 6.09726 6.14318 6.19321 6.24561 6.32570 6.40521 6.55128 6.59130 6.71131 7.30586 7.48531 7.57939 7.59446 7.85213 8.17234 8.26975 8.91717 9.50678 11.00537 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007319 B = 0.004185 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3824.887294 B = 6688.194058 C = 9820.002902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.027 4.027 8 H 0.090 0.910 9 C 0.031 3.969 10 C -0.494 4.494 11 H 0.050 0.950 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.874 3.126 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.278 1.278 18 C 0.144 3.856 19 N -0.208 5.208 20 N -0.567 5.567 21 C 0.342 3.658 22 C -0.144 4.144 23 C 0.014 3.986 24 C -0.101 4.101 25 N 0.043 4.957 26 O -0.170 6.170 27 O -0.157 6.157 28 C 0.046 3.954 29 C -0.129 4.129 30 N 0.041 4.959 31 O -0.180 6.180 32 O -0.134 6.134 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.394 0.606 46 H 0.196 0.804 47 H 0.169 0.831 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 7.468 9.879 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.084 0.916 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.048 4.048 8 H 0.108 0.892 9 C -0.006 4.006 10 C -0.532 4.532 11 H 0.069 0.931 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.204 1.204 18 C -0.049 4.049 19 N -0.009 5.009 20 N -0.282 5.282 21 C 0.226 3.774 22 C -0.166 4.166 23 C -0.007 4.007 24 C -0.188 4.188 25 N 0.560 4.440 26 O -0.383 6.383 27 O -0.372 6.372 28 C 0.026 3.974 29 C -0.220 4.220 30 N 0.560 4.440 31 O -0.386 6.386 32 O -0.357 6.357 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.241 0.759 46 H 0.213 0.787 47 H 0.186 0.814 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.784 6.504 8.918 11.181 hybrid contribution -0.826 1.370 0.047 1.601 sum -2.610 7.874 8.965 12.214 Atomic orbital electron populations 1.21781 0.92818 1.03120 1.02119 1.20942 0.97917 0.98423 0.94741 0.91585 1.21534 1.00805 0.96072 0.95933 1.21617 1.01171 0.94659 0.98667 1.21705 1.00439 0.99905 0.93164 1.20574 1.01901 0.84928 0.97357 0.89233 1.19117 0.95412 0.96123 0.89972 1.20950 1.15293 1.26461 0.90532 0.93135 1.24876 0.95142 0.95456 0.98552 1.69920 1.23768 1.34099 1.25507 0.86962 0.79578 0.79399 0.83855 1.20246 1.21122 1.20406 1.25682 0.90959 0.98401 0.89841 1.75320 1.17125 0.85545 1.22899 1.46830 1.57597 1.05460 1.18339 1.17420 0.85565 0.86279 0.88135 1.21374 1.01446 1.04117 0.89675 1.21219 0.89628 0.90279 0.99542 1.20473 1.15043 0.92695 0.90570 1.43255 0.98345 1.00982 1.01389 1.94532 1.60111 0.96404 1.87242 1.94566 1.52018 1.70526 1.20130 1.20111 0.87285 1.02189 0.87832 1.20031 1.20431 0.90498 0.91031 1.43236 0.99436 1.00085 1.01222 1.94480 1.13256 1.70962 1.59925 1.94567 1.53678 1.19902 1.67564 0.91095 0.91907 0.92484 0.91953 0.91324 0.91359 0.91892 0.90867 0.91889 0.95790 0.95831 0.92919 0.75918 0.78710 0.81359 0.81030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.91 37.16 0.33 -1.17 16 2 C -0.10 -1.19 2.85 -91.37 -0.26 -1.45 16 3 H 0.07 0.82 5.70 -51.93 -0.30 0.52 16 4 C -0.11 -1.09 5.42 -26.63 -0.14 -1.23 16 5 C -0.12 -1.26 5.65 -26.77 -0.15 -1.41 16 6 C -0.11 -1.48 5.23 -26.64 -0.14 -1.62 16 7 C -0.03 -0.44 2.14 -91.38 -0.20 -0.63 16 8 H 0.09 1.42 7.82 -51.93 -0.41 1.02 16 9 C 0.03 0.66 4.13 -27.88 -0.12 0.55 16 10 C -0.49 -11.79 7.56 -34.44 -0.26 -12.05 16 11 H 0.05 1.21 7.53 -52.49 -0.40 0.82 16 12 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 14 Si 0.87 19.72 29.54 -169.99 -5.02 14.70 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.14 2.24 5.50 -78.35 -0.43 1.80 16 19 N -0.21 -3.63 7.93 35.88 0.28 -3.35 16 20 N -0.57 -8.87 6.22 32.42 0.20 -8.67 16 21 C 0.34 5.22 6.68 -83.78 -0.56 4.66 16 22 C -0.14 -2.25 9.51 -39.37 -0.37 -2.63 16 23 C 0.01 0.20 9.55 -39.61 -0.38 -0.18 16 24 C -0.10 -1.39 6.85 -79.90 -0.55 -1.94 16 25 N 0.04 0.63 4.45 33.99 0.15 0.79 16 26 O -0.17 -2.56 18.44 -29.46 -0.54 -3.10 16 27 O -0.16 -2.46 18.44 -29.46 -0.54 -3.00 16 28 C 0.05 0.60 9.17 -39.61 -0.36 0.23 16 29 C -0.13 -1.81 6.51 -79.73 -0.52 -2.33 16 30 N 0.04 0.59 4.32 34.07 0.15 0.74 16 31 O -0.18 -2.64 16.66 -29.46 -0.49 -3.14 16 32 O -0.13 -1.91 18.96 -29.46 -0.56 -2.47 16 33 H 0.07 0.73 6.00 -51.93 -0.31 0.41 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.65 6.42 -51.93 -0.33 0.31 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.39 5.69 3.59 -182.60 -0.66 5.04 16 46 H 0.20 3.58 7.37 -52.48 -0.39 3.19 16 47 H 0.17 2.18 7.60 -52.48 -0.40 1.78 16 48 H 0.17 1.91 7.56 -52.48 -0.40 1.51 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -26.90 401.78 -10.30 -37.20 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.52 Total: 5.51 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -4.21 Total: -17.94 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 1.52 Total: -33.82 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -2.14 Total: -11.71 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -26.90 -10.30 -37.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034871745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.308 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds