Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.62273 * 2 1 4 4 C 1.53230 * 109.78249 * 120.47859 * 2 1 3 5 5 C 1.52961 * 109.41628 * 65.18816 * 4 2 1 6 6 C 1.52954 * 109.81708 * 63.57423 * 5 4 2 7 7 C 1.53224 * 109.42183 * 296.42324 * 6 5 4 8 8 H 1.08999 * 109.62608 * 294.90871 * 7 6 5 9 9 C 1.52996 * 109.62922 * 174.52623 * 7 6 5 10 10 C 1.50701 * 109.47253 * 175.00274 * 9 7 6 11 11 H 1.08000 * 119.99455 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00178 * 180.02562 * 10 9 7 13 13 N 1.31522 * 120.00031 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00326 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46801 * 59.99955 * 14 12 10 16 16 H 1.48494 * 109.47520 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47258 * 300.00369 * 14 12 10 18 18 C 1.51267 * 109.62510 * 239.61814 * 2 1 3 19 19 N 1.28017 * 120.84714 * 111.42303 * 18 2 1 20 20 N 1.40100 * 119.99996 * 354.38092 * 19 18 2 21 21 C 1.39612 * 119.99790 * 184.06084 * 20 19 18 22 22 C 1.38976 * 120.08024 * 3.59920 * 21 20 19 23 23 C 1.38065 * 119.92179 * 179.74413 * 22 21 20 24 24 C 1.38324 * 120.07561 * 0.53318 * 23 22 21 25 25 N 1.48028 * 119.91989 * 179.76566 * 24 23 22 26 26 O 1.21796 * 119.99957 * 179.97438 * 25 24 23 27 27 O 1.21801 * 119.99852 * 359.97396 * 25 24 23 28 28 C 1.38273 * 120.16128 * 359.73599 * 24 23 22 29 29 C 1.38112 * 120.07978 * 359.97438 * 28 24 23 30 30 N 1.48024 * 120.04341 * 180.02562 * 29 28 24 31 31 O 1.21792 * 120.00398 * 142.01258 * 30 29 28 32 32 O 1.21809 * 119.99753 * 322.01135 * 30 29 28 33 33 H 1.08999 * 109.46818 * 180.38145 * 1 2 3 34 34 H 1.08994 * 109.47500 * 300.37792 * 1 2 3 35 35 H 1.08995 * 109.46928 * 60.38258 * 1 2 3 36 36 H 1.08993 * 109.48477 * 185.16169 * 4 2 1 37 37 H 1.09009 * 109.48229 * 305.19066 * 4 2 1 38 38 H 1.09001 * 109.39899 * 303.47699 * 5 4 2 39 39 H 1.09000 * 109.42420 * 183.69131 * 5 4 2 40 40 H 1.09007 * 109.48139 * 176.43574 * 6 5 4 41 41 H 1.09004 * 109.47784 * 56.41480 * 6 5 4 42 42 H 1.08998 * 109.47035 * 295.00341 * 9 7 6 43 43 H 1.08997 * 109.47273 * 54.99872 * 9 7 6 44 44 H 0.96993 * 120.00302 * 179.97438 * 13 12 10 45 45 H 0.96999 * 119.99925 * 4.06017 * 20 19 18 46 46 H 1.08004 * 120.04236 * 359.97438 * 22 21 20 47 47 H 1.08004 * 119.96561 * 180.24698 * 23 22 21 48 48 H 1.08003 * 119.96474 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0486 -0.7313 1.2426 5 6 1.6511 -2.2065 1.1674 6 6 2.3285 -2.8654 -0.0353 7 6 1.8204 -2.2144 -1.3260 8 1 0.7573 -2.4224 -1.4471 9 6 2.5929 -2.7738 -2.5223 10 6 2.0093 -2.2245 -3.7985 11 1 1.1710 -1.5447 -3.7601 12 6 2.5449 -2.5905 -5.0151 13 7 3.5655 -3.4188 -5.0618 14 14 1.8211 -1.9102 -6.5970 15 1 1.9234 -0.4287 -6.5911 16 1 2.5701 -2.4539 -7.7582 17 1 0.3938 -2.3073 -6.6993 18 6 2.0381 -0.7206 -1.2291 19 7 2.6367 -0.0825 -2.1637 20 7 2.7249 1.3148 -2.1126 21 6 3.3024 2.0169 -3.1722 22 6 3.7223 1.3390 -4.3104 23 6 4.2881 2.0372 -5.3585 24 6 4.4474 3.4085 -5.2720 25 7 5.0592 4.1531 -6.3957 26 8 5.1997 5.3606 -6.3213 27 8 5.4222 3.5581 -7.3946 28 6 4.0359 4.0857 -4.1389 29 6 3.4635 3.3945 -3.0890 30 7 3.0228 4.1203 -1.8765 31 8 1.9997 3.7874 -1.3056 32 8 3.6833 5.0505 -1.4498 33 1 -0.3633 -1.0276 0.0068 34 1 -0.3634 0.5196 0.8865 35 1 -0.3633 0.5079 -0.8934 36 1 3.1346 -0.6495 1.2859 37 1 1.6144 -0.2827 2.1362 38 1 0.5691 -2.2849 1.0617 39 1 1.9625 -2.7129 2.0810 40 1 2.0925 -3.9295 -0.0475 41 1 3.4080 -2.7333 0.0381 42 1 3.6405 -2.4823 -2.4468 43 1 2.5179 -3.8612 -2.5270 44 1 3.9421 -3.6766 -5.9177 45 1 2.3847 1.7944 -1.3412 46 1 3.6027 0.2676 -4.3766 47 1 4.6111 1.5116 -6.2450 48 1 4.1613 5.1565 -4.0749 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034871745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = 41.398783 kcal Electronic energy + Delta-G solvation = -35821.213207 eV Core-core repulsion = 31075.994275 eV Total energy + Delta-G solvation = -4745.218932 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.79268 -43.34241 -41.25737 -40.52592 -38.18293 -37.81599 -37.46901 -35.67346 -34.50050 -33.71121 -33.47696 -31.70754 -30.33028 -28.34803 -28.15030 -27.16035 -26.34153 -24.77822 -24.26797 -23.73909 -22.59673 -21.76211 -21.35143 -20.41015 -20.03513 -19.67206 -19.44026 -19.08191 -18.78222 -18.58344 -18.30912 -17.60707 -16.61154 -16.43176 -16.17819 -15.83172 -15.72325 -15.47444 -14.98742 -14.70028 -14.61522 -14.12660 -13.88827 -13.77018 -13.74912 -13.42699 -13.27061 -13.07730 -12.95124 -12.88592 -12.83470 -12.63148 -12.59666 -12.49571 -12.45130 -12.40643 -12.31411 -12.20392 -12.01265 -11.70015 -11.56876 -11.39827 -11.26009 -11.13424 -10.87336 -10.49734 -10.37627 -9.32640 -8.08850 -6.10937 -1.51130 -1.39672 -0.35894 -0.26536 -0.04725 0.23195 0.97831 1.19110 1.35624 1.40829 1.45246 1.74354 2.43090 2.67037 3.01605 3.04922 3.13012 3.26077 3.37246 3.41233 3.62770 3.89408 3.96722 3.98048 4.14935 4.20903 4.30450 4.33512 4.41961 4.44956 4.54008 4.73381 4.77963 4.83853 4.90711 4.96536 4.99926 5.06821 5.07667 5.08561 5.20500 5.28120 5.30779 5.35510 5.44450 5.53381 5.62444 5.78943 5.93226 6.16548 6.34522 6.36758 6.97324 6.99330 7.52315 9.02848 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007319 B = 0.004185 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3824.887294 B = 6688.194058 C = 9820.002902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.023 4.023 8 H 0.096 0.904 9 C 0.038 3.962 10 C -0.483 4.483 11 H 0.048 0.952 12 C 0.016 3.984 13 N -0.930 5.930 14 Si 0.921 3.079 15 H -0.265 1.265 16 H -0.290 1.290 17 H -0.278 1.278 18 C 0.144 3.856 19 N -0.251 5.251 20 N -0.565 5.565 21 C 0.337 3.663 22 C -0.159 4.159 23 C 0.025 3.975 24 C -0.101 4.101 25 N 0.044 4.956 26 O -0.158 6.158 27 O -0.180 6.180 28 C 0.065 3.935 29 C -0.127 4.127 30 N 0.042 4.958 31 O -0.190 6.190 32 O -0.122 6.122 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.049 0.951 42 H -0.006 1.006 43 H -0.001 1.001 44 H 0.258 0.742 45 H 0.399 0.601 46 H 0.166 0.834 47 H 0.176 0.824 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 9.272 11.765 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.082 0.918 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.043 4.043 8 H 0.114 0.886 9 C 0.001 3.999 10 C -0.521 4.521 11 H 0.067 0.933 12 C -0.181 4.181 13 N -0.572 5.572 14 Si 0.748 3.252 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.204 1.204 18 C -0.048 4.048 19 N -0.052 5.052 20 N -0.281 5.281 21 C 0.221 3.779 22 C -0.182 4.182 23 C 0.004 3.996 24 C -0.188 4.188 25 N 0.561 4.439 26 O -0.375 6.375 27 O -0.390 6.390 28 C 0.045 3.955 29 C -0.218 4.218 30 N 0.562 4.438 31 O -0.394 6.394 32 O -0.349 6.349 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.012 0.988 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.247 0.753 46 H 0.184 0.816 47 H 0.193 0.807 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.054 8.262 10.786 13.926 hybrid contribution -0.409 0.862 -0.488 1.072 sum -3.463 9.125 10.298 14.188 Atomic orbital electron populations 1.21799 0.91410 1.03766 1.02620 1.21009 0.98933 0.97948 0.93672 0.91825 1.21574 1.00471 0.96099 0.95915 1.21588 1.01654 0.94311 0.97758 1.21670 0.99912 1.00323 0.92925 1.20436 1.01344 0.85839 0.96718 0.88579 1.18927 0.94436 0.94623 0.91892 1.21189 1.14404 1.25152 0.91390 0.93337 1.25466 0.95542 0.95915 1.01199 1.70036 1.25428 1.35994 1.25747 0.86190 0.78622 0.79537 0.80860 1.18951 1.21566 1.20392 1.25858 0.90073 0.97988 0.90883 1.75234 1.18726 0.86712 1.24572 1.46699 1.57848 1.04861 1.18653 1.17497 0.85609 0.86889 0.87928 1.21018 1.03431 1.02880 0.90826 1.21228 0.88540 0.90620 0.99191 1.20379 1.15409 0.92404 0.90626 1.43319 0.98211 1.00973 1.01437 1.94518 1.59428 0.96454 1.87106 1.94581 1.53163 1.70617 1.20676 1.20297 0.85429 1.03130 0.86668 1.19960 1.20547 0.89912 0.91350 1.43205 0.99396 1.00058 1.01167 1.94488 1.13532 1.71274 1.60124 1.94563 1.53424 1.19593 1.67282 0.90420 0.89335 0.94038 0.92800 0.88420 0.89920 0.89588 0.90357 0.93173 0.98774 0.98218 0.93325 0.75320 0.81613 0.80659 0.78689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.91 71.98 0.64 -1.95 16 2 C -0.09 -2.09 2.85 -11.28 -0.03 -2.13 16 3 H 0.06 1.47 5.70 -2.39 -0.01 1.45 16 4 C -0.10 -1.81 5.42 30.66 0.17 -1.64 16 5 C -0.12 -1.99 5.65 30.57 0.17 -1.82 16 6 C -0.11 -2.76 5.23 30.65 0.16 -2.60 16 7 C -0.02 -0.74 2.14 -11.28 -0.02 -0.76 16 8 H 0.10 3.00 7.82 -2.39 -0.02 2.98 16 9 C 0.04 1.73 4.13 29.85 0.12 1.85 16 10 C -0.48 -23.81 7.56 25.60 0.19 -23.62 16 11 H 0.05 2.38 7.53 -2.91 -0.02 2.35 16 12 C 0.02 0.84 5.46 84.65 0.46 1.30 16 13 N -0.93 -52.26 13.29 21.45 0.28 -51.98 16 14 Si 0.92 41.34 29.54 68.60 2.03 43.37 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.14 4.46 5.50 46.89 0.26 4.71 16 19 N -0.25 -8.97 7.93 -40.33 -0.32 -9.29 16 20 N -0.56 -17.71 6.22 -51.35 -0.32 -18.03 16 21 C 0.34 10.26 6.68 38.25 0.26 10.51 16 22 C -0.16 -5.09 9.51 22.41 0.21 -4.88 16 23 C 0.03 0.70 9.55 22.25 0.21 0.91 16 24 C -0.10 -2.66 6.85 36.40 0.25 -2.41 16 25 N 0.04 1.25 4.45 -46.39 -0.21 1.05 16 26 O -0.16 -4.41 18.44 18.89 0.35 -4.06 16 27 O -0.18 -5.52 18.44 18.89 0.35 -5.18 16 28 C 0.07 1.54 9.17 22.25 0.20 1.74 16 29 C -0.13 -3.38 6.51 36.51 0.24 -3.15 16 30 N 0.04 1.13 4.32 -46.12 -0.20 0.93 16 31 O -0.19 -5.30 16.66 18.90 0.31 -4.98 16 32 O -0.12 -3.18 18.96 18.88 0.36 -2.83 16 33 H 0.08 1.35 6.00 -2.39 -0.01 1.34 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.08 1.23 6.42 -2.39 -0.02 1.22 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 42 H -0.01 -0.31 8.06 -2.39 -0.02 -0.33 16 43 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.40 11.31 3.59 -213.32 -0.77 10.54 16 46 H 0.17 6.46 7.37 -2.91 -0.02 6.44 16 47 H 0.18 4.58 7.60 -2.91 -0.02 4.56 16 48 H 0.20 3.69 7.56 -2.91 -0.02 3.67 16 Total: -1.00 -59.81 401.78 6.39 -53.42 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.26 Total: 21.49 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.49 Total: -23.92 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -0.76 Total: -77.32 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 1.37 Total: -17.04 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -59.81 6.39 -53.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034871745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.823 kcal (2) G-P(sol) polarization free energy of solvation -59.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds