Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38395 * 119.96287 * 2 1 4 4 C 1.38341 * 120.41801 * 180.49077 * 3 2 1 5 5 C 1.50697 * 119.94463 * 180.02562 * 4 3 2 6 6 C 1.38060 * 120.11627 * 0.02562 * 4 3 2 7 7 C 1.39470 * 119.62395 * 359.09332 * 6 4 3 8 8 C 1.38003 * 119.96797 * 179.97438 * 2 1 3 9 9 C 1.48031 * 119.51155 * 181.45429 * 7 6 4 10 10 O 1.21763 * 120.66992 * 193.39403 * 9 7 6 11 11 C 1.41880 * 118.65650 * 13.41067 * 9 7 6 12 12 C 1.35337 * 120.18108 * 185.87397 * 11 9 7 13 13 C 1.46782 * 120.00213 * 11.00287 * 12 11 9 14 14 C 1.40124 * 120.09740 * 227.10776 * 13 12 11 15 15 C 1.36576 * 119.89383 * 179.73446 * 14 13 12 16 16 C 1.39288 * 120.10708 * 0.54026 * 15 14 13 17 17 N 1.39042 * 119.90321 * 179.73734 * 16 15 14 18 18 C 1.46506 * 119.99997 * 179.97438 * 17 16 15 19 19 C 1.46503 * 120.00160 * 359.97438 * 17 16 15 20 20 C 1.50700 * 109.47175 * 90.00061 * 19 17 16 21 21 H 1.08005 * 119.99606 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00037 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00143 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99818 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47012 * 89.99976 * 24 22 20 26 26 H 1.48506 * 109.46789 * 209.99448 * 24 22 20 27 27 H 1.48494 * 109.47410 * 329.99749 * 24 22 20 28 28 C 1.39288 * 120.19173 * 359.71335 * 16 15 14 29 29 C 1.36584 * 120.10488 * 0.02562 * 28 16 15 30 30 C 1.50612 * 119.63468 * 5.85827 * 11 9 7 31 31 C 1.50425 * 120.02120 * 177.73003 * 6 4 3 32 32 H 1.08999 * 109.47397 * 89.99782 * 1 2 3 33 33 H 1.09002 * 109.47223 * 209.99779 * 1 2 3 34 34 H 1.09003 * 109.47299 * 329.99274 * 1 2 3 35 35 H 1.08006 * 119.79345 * 0.47283 * 3 2 1 36 36 H 1.09002 * 109.47317 * 264.19482 * 5 4 3 37 37 H 1.08998 * 109.47015 * 24.19324 * 5 4 3 38 38 H 1.09003 * 109.47321 * 144.19210 * 5 4 3 39 39 H 1.08004 * 120.15236 * 359.90671 * 8 2 1 40 40 H 1.08004 * 119.99867 * 191.00037 * 12 11 9 41 41 H 1.07997 * 120.05103 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.94623 * 180.23056 * 15 14 13 43 43 H 1.08997 * 109.47191 * 89.99602 * 18 17 16 44 44 H 1.08997 * 109.47303 * 209.99883 * 18 17 16 45 45 H 1.09006 * 109.46664 * 329.99884 * 18 17 16 46 46 H 1.09004 * 109.47037 * 210.00017 * 19 17 16 47 47 H 1.08997 * 109.46823 * 329.99578 * 19 17 16 48 48 H 0.97001 * 120.00076 * 180.02562 * 23 22 20 49 49 H 1.07997 * 119.94307 * 180.02562 * 28 16 15 50 50 H 1.07993 * 120.04970 * 179.97438 * 29 28 16 51 51 H 1.09003 * 109.25994 * 81.85050 * 30 11 9 52 52 H 1.09001 * 109.25705 * 201.33544 * 30 11 9 53 53 H 1.08999 * 109.15054 * 25.28116 * 31 6 4 54 54 H 1.09003 * 109.19529 * 266.02811 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1990 0.0000 4 6 3.5815 1.2100 -0.0102 5 6 4.3233 2.5217 -0.0095 6 6 4.2836 0.0213 -0.0210 7 6 3.5907 -1.1889 -0.0024 8 6 2.1963 -1.1955 0.0005 9 6 4.3464 -2.4616 0.0186 10 8 3.7876 -3.5195 -0.2077 11 6 5.7348 -2.4238 0.3081 12 6 6.4792 -3.5505 0.2194 13 6 5.9168 -4.7547 -0.4037 14 6 6.0469 -5.9988 0.2278 15 6 5.5173 -7.1157 -0.3530 16 6 4.8584 -7.0213 -1.5766 17 7 4.3255 -8.1619 -2.1667 18 6 3.6315 -8.0650 -3.4533 19 6 4.4580 -9.4607 -1.5019 20 6 3.2753 -9.6837 -0.5949 21 1 2.5022 -8.9332 -0.5213 22 6 3.1799 -10.8462 0.1402 23 7 2.1481 -11.0406 0.9322 24 14 4.5169 -12.1445 0.0124 25 1 5.5636 -11.8792 1.0319 26 1 3.9270 -13.4871 0.2463 27 1 5.1229 -12.0993 -1.3425 28 6 4.7313 -5.7875 -2.2104 29 6 5.2532 -4.6644 -1.6344 30 6 6.3757 -1.1228 0.7145 31 6 5.7865 0.0355 -0.0837 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5140 35 1 1.6542 2.1320 0.0077 36 1 4.5851 2.7917 -1.0326 37 1 3.6894 3.2974 0.4200 38 1 5.2321 2.4249 0.5846 39 1 1.6583 -2.1320 0.0025 40 1 7.4873 -3.5637 0.6070 41 1 6.5619 -6.0737 1.1741 42 1 5.6138 -8.0744 0.1348 43 1 4.3477 -8.2017 -4.2636 44 1 2.8649 -8.8376 -3.5118 45 1 3.1658 -7.0835 -3.5418 46 1 4.4946 -10.2508 -2.2520 47 1 5.3753 -9.4757 -0.9134 48 1 2.0811 -11.8583 1.4496 49 1 4.2192 -5.7189 -3.1588 50 1 5.1545 -3.7083 -2.1268 51 1 6.2016 -0.9527 1.7770 52 1 7.4486 -1.1776 0.5302 53 1 6.1527 0.9766 0.3267 54 1 6.1027 -0.0482 -1.1235 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035190010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = 23.752327 kcal Electronic energy + Delta-G solvation = -33485.416284 eV Core-core repulsion = 29351.540412 eV Total energy + Delta-G solvation = -4133.875871 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.83215 -40.55591 -39.55729 -37.45539 -36.85163 -34.88555 -34.51006 -33.43331 -32.22198 -31.74290 -30.38694 -29.75465 -28.17177 -27.42273 -27.17259 -25.89170 -24.33229 -23.60035 -22.87269 -22.36653 -21.22590 -21.01717 -19.12530 -18.85650 -18.35399 -17.49207 -17.13331 -16.81702 -16.67074 -16.23153 -16.05695 -15.75815 -15.54083 -15.21243 -14.88675 -14.76488 -14.74682 -14.64215 -14.44165 -14.31566 -14.26840 -14.18318 -13.99669 -13.66610 -13.40203 -13.38000 -13.16630 -13.13040 -13.04192 -12.84357 -12.70406 -12.59272 -12.52295 -12.43879 -12.13348 -12.08129 -11.86179 -11.79309 -11.59333 -11.53339 -10.97815 -10.85007 -10.38288 -9.88327 -9.69801 -9.59016 -9.35666 -8.36225 -7.81894 -6.42804 -0.56277 0.22976 0.35426 0.74704 1.08681 1.31964 1.33898 1.44639 2.08036 2.28239 2.46590 2.84674 2.97100 3.10088 3.26429 3.65545 3.81502 3.87810 3.95808 3.98866 4.02899 4.09414 4.24314 4.30762 4.31984 4.36237 4.45584 4.52165 4.57495 4.60473 4.61438 4.67230 4.70737 4.73227 4.75128 4.79757 4.83065 4.86940 4.92640 4.93887 4.98100 5.01618 5.08061 5.13083 5.20042 5.23606 5.32789 5.37830 5.40585 5.41470 5.47056 5.56144 5.58936 5.62287 5.71751 5.84904 6.02110 6.02897 6.14459 6.54321 6.64152 6.75465 6.78286 7.22340 8.81619 Molecular weight = 375.19amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.002135 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.131764 B =13109.949351 C =14009.876336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.094 4.094 4 C -0.097 4.097 5 C -0.112 4.112 6 C -0.047 4.047 7 C -0.174 4.174 8 C -0.099 4.099 9 C 0.411 3.589 10 O -0.481 6.481 11 C -0.234 4.234 12 C 0.022 3.978 13 C -0.163 4.163 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.228 3.772 17 N -0.621 5.621 18 C 0.095 3.905 19 C 0.230 3.770 20 C -0.539 4.539 21 H 0.018 0.982 22 C 0.009 3.991 23 N -0.947 5.947 24 Si 0.951 3.049 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.241 1.241 28 C -0.226 4.226 29 C -0.005 4.005 30 C -0.062 4.062 31 C -0.084 4.084 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.269 0.731 49 H 0.125 0.875 50 H 0.112 0.888 51 H 0.078 0.922 52 H 0.110 0.890 53 H 0.117 0.883 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.624 30.918 -3.492 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.112 4.112 4 C -0.097 4.097 5 C -0.168 4.168 6 C -0.047 4.047 7 C -0.175 4.175 8 C -0.117 4.117 9 C 0.296 3.704 10 O -0.362 6.362 11 C -0.235 4.235 12 C 0.004 3.996 13 C -0.166 4.166 14 C -0.069 4.069 15 C -0.249 4.249 16 C 0.122 3.878 17 N -0.327 5.327 18 C -0.048 4.048 19 C 0.108 3.892 20 C -0.577 4.577 21 H 0.036 0.964 22 C -0.188 4.188 23 N -0.587 5.587 24 Si 0.773 3.227 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.164 1.164 28 C -0.248 4.248 29 C -0.024 4.024 30 C -0.099 4.099 31 C -0.120 4.120 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.184 0.816 41 H 0.154 0.846 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.143 0.857 50 H 0.130 0.870 51 H 0.097 0.903 52 H 0.128 0.872 53 H 0.135 0.865 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.153 30.063 -3.619 31.937 hybrid contribution -0.935 -1.579 0.344 1.867 sum 9.218 28.484 -3.274 30.117 Atomic orbital electron populations 1.20823 0.89597 1.03485 1.03035 1.20141 0.97431 0.92598 1.00667 1.21450 0.93983 0.97865 0.97870 1.20163 0.93798 0.95881 0.99836 1.20917 1.00604 0.91731 1.03592 1.20121 0.97205 0.90915 0.96467 1.20488 0.94303 0.95384 1.07325 1.21198 0.93646 0.98267 0.98582 1.19727 0.90173 0.87521 0.73011 1.90825 1.73491 1.33547 1.38291 1.21400 0.93926 0.98308 1.09830 1.22662 0.99339 0.89177 0.88459 1.18773 1.07083 0.93467 0.97266 1.20849 0.96684 0.90840 0.98556 1.20457 1.07471 0.99807 0.97210 1.18278 0.90596 0.87067 0.91892 1.46645 1.58317 1.05806 1.21959 1.21671 0.96708 1.02271 0.84157 1.19410 0.95471 0.81748 0.92594 1.21630 1.07127 1.03482 1.25510 0.96387 1.25945 0.98377 1.00573 0.93943 1.70084 1.32090 1.27849 1.28699 0.85663 0.78816 0.77622 0.80570 1.18792 1.20417 1.16401 1.20364 1.09680 0.91393 1.03401 1.20508 0.91768 0.96206 0.93895 1.20339 1.00827 0.88398 1.00358 1.20591 0.88671 1.00540 1.02184 0.90494 0.92375 0.89301 0.82984 0.89914 0.90245 0.89523 0.87932 0.81597 0.84568 0.87501 0.91366 0.92248 0.91476 0.94154 0.94802 0.92242 0.85700 0.86986 0.90331 0.87213 0.86521 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.23 0.71 -1.17 16 2 C -0.11 -2.31 5.88 -19.88 -0.12 -2.43 16 3 C -0.09 -1.53 9.32 22.33 0.21 -1.32 16 4 C -0.10 -1.47 5.88 -19.88 -0.12 -1.59 16 5 C -0.11 -0.79 9.42 71.24 0.67 -0.12 16 6 C -0.05 -0.89 5.67 -19.70 -0.11 -1.00 16 7 C -0.17 -4.71 5.81 -20.09 -0.12 -4.82 16 8 C -0.10 -2.78 9.27 22.50 0.21 -2.57 16 9 C 0.41 12.75 6.08 25.77 0.16 12.90 16 10 O -0.48 -19.36 12.49 -4.55 -0.06 -19.42 16 11 C -0.23 -5.44 5.49 -19.66 -0.11 -5.55 16 12 C 0.02 0.52 9.37 23.84 0.22 0.74 16 13 C -0.16 -5.41 4.38 -20.13 -0.09 -5.50 16 14 C -0.05 -1.85 9.75 22.34 0.22 -1.63 16 15 C -0.23 -9.89 9.14 22.13 0.20 -9.68 16 16 C 0.23 10.02 6.55 38.50 0.25 10.27 16 17 N -0.62 -28.00 2.97 -726.42 -2.16 -30.16 16 18 C 0.09 3.47 10.17 127.77 1.30 4.77 16 19 C 0.23 11.37 3.97 85.63 0.34 11.71 16 20 C -0.54 -32.43 9.94 25.60 0.25 -32.17 16 21 H 0.02 1.25 8.06 -2.91 -0.02 1.23 16 22 C 0.01 0.56 5.47 84.65 0.46 1.03 16 23 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 24 Si 0.95 43.93 27.47 68.60 1.88 45.82 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 28 C -0.23 -8.78 9.14 22.14 0.20 -8.57 16 29 C 0.00 -0.17 6.70 22.34 0.15 -0.02 16 30 C -0.06 -0.84 5.89 29.66 0.17 -0.67 16 31 C -0.08 -1.01 5.54 29.60 0.16 -0.85 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.38 8.04 -2.39 -0.02 0.36 16 38 H 0.09 0.38 6.22 -2.39 -0.01 0.37 16 39 H 0.10 3.35 7.76 -2.91 -0.02 3.33 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.11 5.00 6.11 -2.91 -0.02 4.98 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 45 H 0.07 2.30 6.17 -2.38 -0.01 2.29 16 46 H 0.04 1.89 7.13 -2.38 -0.02 1.87 16 47 H 0.03 1.64 5.60 -2.39 -0.01 1.63 16 48 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 49 H 0.13 4.40 6.11 -2.91 -0.02 4.38 16 50 H 0.11 3.63 7.36 -2.91 -0.02 3.60 16 51 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.11 0.86 8.01 -2.39 -0.02 0.84 16 53 H 0.12 0.68 5.82 -2.39 -0.01 0.67 16 54 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -82.15 426.31 6.06 -76.09 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.85 Total: 26.59 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 5.24 Total: -38.24 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -1.86 Total: -90.84 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.06 Total: -19.42 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -82.15 6.06 -76.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035190010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.841 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds