Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48504 * 109.46744 * 89.99620 * 3 2 1 5 5 H 1.48497 * 109.47394 * 209.99914 * 3 2 1 6 6 H 1.48503 * 109.46852 * 330.00186 * 3 2 1 7 7 C 1.37874 * 120.00064 * 180.27274 * 2 1 3 8 8 H 1.07999 * 120.00322 * 359.73091 * 7 2 1 9 9 C 1.50704 * 119.99897 * 179.72495 * 7 2 1 10 10 N 1.46505 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34257 * 125.14489 * 124.99920 * 10 9 7 12 12 C 1.38264 * 107.82847 * 180.02562 * 11 10 9 13 13 C 1.46731 * 126.84029 * 180.02562 * 12 11 10 14 14 C 1.35269 * 119.99703 * 312.71320 * 13 12 11 15 15 C 1.41527 * 119.99960 * 348.71715 * 14 13 12 16 16 O 1.21675 * 120.00095 * 353.14242 * 15 14 13 17 17 O 1.34952 * 120.00045 * 173.14321 * 15 14 13 18 18 C 1.46745 * 106.32485 * 0.02562 * 12 11 10 19 19 C 1.48245 * 126.51004 * 180.02562 * 18 12 11 20 20 C 1.39408 * 120.11526 * 324.72929 * 19 18 12 21 21 C 1.37982 * 119.87853 * 179.72517 * 20 19 18 22 22 C 1.38425 * 120.11497 * 0.56531 * 21 20 19 23 23 Br 1.89100 * 119.87999 * 179.70087 * 22 21 20 24 24 C 1.38423 * 120.23926 * 359.68674 * 22 21 20 25 25 C 1.37981 * 120.11519 * 0.03684 * 24 22 21 26 26 N 1.31368 * 106.97736 * 359.72480 * 18 12 11 27 27 H 0.97003 * 120.00018 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47330 * 300.00269 * 9 7 2 29 29 H 1.08994 * 109.46924 * 60.00601 * 9 7 2 30 30 H 1.08001 * 126.08318 * 359.97438 * 11 10 9 31 31 H 1.07999 * 120.00346 * 132.70653 * 13 12 11 32 32 H 1.07999 * 119.99733 * 168.71427 * 14 13 12 33 33 H 0.96697 * 114.00522 * 180.02562 * 17 15 14 34 34 H 1.08000 * 120.06479 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.94560 * 180.25448 * 21 20 19 36 36 H 1.08002 * 119.93905 * 180.02562 * 24 22 21 37 37 H 1.08002 * 120.05311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4646 -2.1293 -0.0057 9 6 3.5115 -1.1939 -0.0119 10 7 3.9999 -2.5752 -0.0179 11 6 4.8475 -3.0914 -0.9221 12 6 5.0659 -4.4156 -0.5900 13 6 5.9244 -5.3706 -1.2999 14 6 5.8449 -5.4807 -2.6457 15 6 4.7822 -4.8604 -3.3449 16 8 3.8735 -4.3351 -2.7293 17 8 4.7765 -4.8516 -4.6944 18 6 4.2683 -4.6759 0.6140 19 6 4.1751 -5.9594 1.3498 20 6 4.2120 -7.1679 0.6558 21 6 4.1307 -8.3598 1.3461 22 6 4.0008 -8.3567 2.7243 23 35 3.8813 -9.9940 3.6629 24 6 3.9583 -7.1595 3.4178 25 6 4.0446 -5.9621 2.7378 26 7 3.6576 -3.5536 0.9195 27 1 -0.4850 0.8401 -0.0004 28 1 3.8712 -0.6779 -0.9022 29 1 3.8785 -0.6823 0.8777 30 1 5.2808 -2.5659 -1.7603 31 1 6.6197 -5.9856 -0.7479 32 1 6.5925 -6.0418 -3.1867 33 1 4.0113 -4.4050 -5.0817 34 1 4.3082 -7.1713 -0.4199 35 1 4.1633 -9.2967 0.8099 36 1 3.8573 -7.1628 4.4931 37 1 4.0110 -5.0285 3.2799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035214606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = 38.334801 kcal Electronic energy + Delta-G solvation = -24844.477808 eV Core-core repulsion = 21021.448550 eV Total energy + Delta-G solvation = -3823.029258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71766 -39.75584 -38.96947 -36.00226 -34.30318 -33.33947 -32.79869 -31.46253 -31.13111 -29.63521 -28.97203 -27.24749 -24.59367 -23.47464 -22.82707 -21.85929 -20.79868 -19.60931 -18.92816 -17.93098 -17.21165 -16.90832 -16.28811 -15.65237 -15.29659 -15.15378 -15.05429 -14.53676 -14.25422 -13.74992 -13.63706 -13.44611 -13.35882 -13.33553 -12.63481 -12.59357 -12.45519 -11.96491 -11.45383 -11.38509 -11.31583 -11.20266 -11.01290 -10.83121 -10.51895 -10.41196 -10.22066 -10.17120 -9.71711 -9.53447 -9.11436 -9.09638 -8.80027 -8.22234 -7.43432 -6.26778 -4.29803 0.78333 0.98575 1.27585 1.50947 2.64047 2.95809 3.09946 3.14361 3.16066 3.25947 3.32174 3.60249 3.79878 4.18216 4.56430 4.72166 4.82859 4.97934 5.07413 5.16990 5.28515 5.29439 5.37310 5.56278 5.59542 5.68421 5.90307 6.06003 6.07689 6.12868 6.24824 6.29910 6.41760 6.49707 6.61602 6.67578 6.72042 6.99704 7.23824 7.57133 8.17781 8.23656 8.34287 8.83710 9.26714 10.85829 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.002717 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.558086 B =10304.381848 C =12514.024648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.087 0.913 9 C 0.227 3.773 10 N -0.309 5.309 11 C 0.129 3.871 12 C -0.260 4.260 13 C 0.079 3.921 14 C -0.251 4.251 15 C 0.498 3.502 16 O -0.494 6.494 17 O -0.521 6.521 18 C 0.100 3.900 19 C 0.027 3.973 20 C -0.095 4.095 21 C -0.091 4.091 22 C -0.092 4.092 23 Br -0.061 7.061 24 C -0.090 4.090 25 C -0.088 4.088 26 N -0.252 5.252 27 H 0.269 0.731 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.165 0.835 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.404 0.596 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.170 -17.613 1.063 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.105 0.895 9 C 0.108 3.892 10 N -0.085 5.085 11 C -0.023 4.023 12 C -0.272 4.272 13 C 0.059 3.941 14 C -0.270 4.270 15 C 0.344 3.656 16 O -0.383 6.383 17 O -0.332 6.332 18 C -0.066 4.066 19 C 0.024 3.976 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.172 4.172 23 Br 0.025 6.975 24 C -0.110 4.110 25 C -0.108 4.108 26 N -0.073 5.073 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.182 0.818 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.260 0.740 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.159 -17.334 2.578 21.915 hybrid contribution 0.303 1.297 -1.281 1.848 sum 13.463 -16.036 1.297 20.978 Atomic orbital electron populations 1.69870 1.06123 1.27311 1.48841 1.24816 0.94868 0.98699 0.94250 0.86916 0.80195 0.83945 0.79024 1.19617 1.19082 1.20491 1.21037 0.87394 0.95861 1.52870 0.89490 1.20166 0.97952 0.72774 0.98311 1.48612 1.30509 1.11137 1.18226 1.22584 0.92265 0.94003 0.93409 1.19790 1.12016 0.94207 1.01170 1.21771 0.90882 0.89231 0.92263 1.21133 1.01424 1.09957 0.94527 1.19864 0.87199 0.77970 0.80585 1.91179 1.37483 1.41820 1.67786 1.85053 1.50740 1.74696 1.22738 1.21623 0.98258 0.92506 0.94171 1.17913 0.97679 0.89725 0.92256 1.21190 0.99459 0.90572 1.00281 1.20965 0.99406 0.98720 0.91959 1.21795 1.09056 0.91455 0.94893 1.96682 1.97445 1.27597 1.75801 1.21026 0.99116 0.90547 1.00286 1.21317 0.97990 0.98246 0.93252 1.77353 1.20325 0.96100 1.13516 0.92111 0.93024 0.94167 0.81822 0.84777 0.84611 0.74007 0.84825 0.84840 0.84823 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.64 6.54 56.52 0.37 -5.27 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.05 9.76 -34.44 -0.34 -15.39 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.23 5.28 5.28 -5.19 -0.03 5.25 16 10 N -0.31 -6.75 3.62 -61.92 -0.22 -6.97 16 11 C 0.13 2.36 8.51 -16.48 -0.14 2.22 16 12 C -0.26 -4.28 4.60 -103.02 -0.47 -4.75 16 13 C 0.08 0.94 8.39 -37.21 -0.31 0.62 16 14 C -0.25 -2.86 9.96 -39.39 -0.39 -3.25 16 15 C 0.50 7.00 7.70 31.98 0.25 7.24 16 16 O -0.49 -9.15 13.09 -19.40 -0.25 -9.40 16 17 O -0.52 -6.04 13.54 -41.18 -0.56 -6.60 16 18 C 0.10 1.83 6.94 -80.52 -0.56 1.28 16 19 C 0.03 0.40 5.84 -104.91 -0.61 -0.21 16 20 C -0.09 -1.21 9.17 -39.24 -0.36 -1.57 16 21 C -0.09 -1.01 9.77 -39.61 -0.39 -1.40 16 22 C -0.09 -1.06 6.23 -39.44 -0.25 -1.31 16 23 Br -0.06 -0.61 33.69 -68.01 -2.29 -2.90 16 24 C -0.09 -1.07 9.77 -39.61 -0.39 -1.46 16 25 C -0.09 -1.22 9.76 -39.24 -0.38 -1.61 16 26 N -0.25 -5.56 12.27 34.60 0.42 -5.13 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.05 1.12 7.10 -51.93 -0.37 0.75 16 29 H 0.04 0.91 7.57 -51.93 -0.39 0.51 16 30 H 0.16 2.59 7.94 -52.49 -0.42 2.17 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.40 3.44 8.98 45.56 0.41 3.85 16 34 H 0.13 1.60 6.88 -52.49 -0.36 1.24 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -33.81 350.65 -8.82 -42.62 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -2.83 Total: 5.79 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.47 Total: -12.23 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.97 Total: -37.88 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.81 Total: -16.00 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.81 -8.82 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035214606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.959 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds