Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00062 * 2 1 4 4 H 1.48504 * 109.46744 * 89.99620 * 3 2 1 5 5 H 1.48497 * 109.47394 * 209.99914 * 3 2 1 6 6 H 1.48503 * 109.46852 * 330.00186 * 3 2 1 7 7 C 1.37874 * 120.00064 * 180.27274 * 2 1 3 8 8 H 1.07999 * 120.00322 * 359.73091 * 7 2 1 9 9 C 1.50704 * 119.99897 * 179.72495 * 7 2 1 10 10 N 1.46505 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34257 * 125.14489 * 124.99920 * 10 9 7 12 12 C 1.38264 * 107.82847 * 180.02562 * 11 10 9 13 13 C 1.46731 * 126.84029 * 180.02562 * 12 11 10 14 14 C 1.35269 * 119.99703 * 312.71320 * 13 12 11 15 15 C 1.41527 * 119.99960 * 348.71715 * 14 13 12 16 16 O 1.21675 * 120.00095 * 353.14242 * 15 14 13 17 17 O 1.34952 * 120.00045 * 173.14321 * 15 14 13 18 18 C 1.46745 * 106.32485 * 0.02562 * 12 11 10 19 19 C 1.48245 * 126.51004 * 180.02562 * 18 12 11 20 20 C 1.39408 * 120.11526 * 324.72929 * 19 18 12 21 21 C 1.37982 * 119.87853 * 179.72517 * 20 19 18 22 22 C 1.38425 * 120.11497 * 0.56531 * 21 20 19 23 23 Br 1.89100 * 119.87999 * 179.70087 * 22 21 20 24 24 C 1.38423 * 120.23926 * 359.68674 * 22 21 20 25 25 C 1.37981 * 120.11519 * 0.03684 * 24 22 21 26 26 N 1.31368 * 106.97736 * 359.72480 * 18 12 11 27 27 H 0.97003 * 120.00018 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47330 * 300.00269 * 9 7 2 29 29 H 1.08994 * 109.46924 * 60.00601 * 9 7 2 30 30 H 1.08001 * 126.08318 * 359.97438 * 11 10 9 31 31 H 1.07999 * 120.00346 * 132.70653 * 13 12 11 32 32 H 1.07999 * 119.99733 * 168.71427 * 14 13 12 33 33 H 0.96697 * 114.00522 * 180.02562 * 17 15 14 34 34 H 1.08000 * 120.06479 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.94560 * 180.25448 * 21 20 19 36 36 H 1.08002 * 119.93905 * 180.02562 * 24 22 21 37 37 H 1.08002 * 120.05311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4646 -2.1293 -0.0057 9 6 3.5115 -1.1939 -0.0119 10 7 3.9999 -2.5752 -0.0179 11 6 4.8475 -3.0914 -0.9221 12 6 5.0659 -4.4156 -0.5900 13 6 5.9244 -5.3706 -1.2999 14 6 5.8449 -5.4807 -2.6457 15 6 4.7822 -4.8604 -3.3449 16 8 3.8735 -4.3351 -2.7293 17 8 4.7765 -4.8516 -4.6944 18 6 4.2683 -4.6759 0.6140 19 6 4.1751 -5.9594 1.3498 20 6 4.2120 -7.1679 0.6558 21 6 4.1307 -8.3598 1.3461 22 6 4.0008 -8.3567 2.7243 23 35 3.8813 -9.9940 3.6629 24 6 3.9583 -7.1595 3.4178 25 6 4.0446 -5.9621 2.7378 26 7 3.6576 -3.5536 0.9195 27 1 -0.4850 0.8401 -0.0004 28 1 3.8712 -0.6779 -0.9022 29 1 3.8785 -0.6823 0.8777 30 1 5.2808 -2.5659 -1.7603 31 1 6.6197 -5.9856 -0.7479 32 1 6.5925 -6.0418 -3.1867 33 1 4.0113 -4.4050 -5.0817 34 1 4.3082 -7.1713 -0.4199 35 1 4.1633 -9.2967 0.8099 36 1 3.8573 -7.1628 4.4931 37 1 4.0110 -5.0285 3.2799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035214606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 16.202136 kcal Electronic energy + Delta-G solvation = -24845.437552 eV Core-core repulsion = 21021.448550 eV Total energy + Delta-G solvation = -3823.989002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03110 -40.91382 -40.01779 -37.07306 -35.85306 -34.75902 -34.19709 -32.85026 -32.11870 -30.98699 -30.17998 -28.77416 -25.82804 -24.94761 -23.83281 -23.23228 -22.08950 -20.90672 -20.05237 -19.14526 -19.01531 -18.27140 -17.45365 -16.88386 -16.56749 -16.29045 -16.24839 -16.00638 -15.63602 -14.89699 -14.82937 -14.73672 -14.51108 -14.42806 -14.31205 -13.93261 -13.79047 -13.29472 -12.94180 -12.65646 -12.48303 -12.40482 -12.35641 -12.09389 -12.01757 -11.86502 -11.56127 -11.43983 -11.26301 -10.94736 -10.62708 -10.44348 -10.06583 -9.44584 -8.73354 -8.42151 -6.53202 -0.25414 -0.05758 0.30158 0.59616 1.23751 1.29817 1.34200 1.42570 1.74799 1.77355 2.23432 2.27397 2.66821 2.70522 2.89411 3.38027 3.66920 3.84794 3.91850 4.12049 4.19080 4.29475 4.36928 4.38487 4.54060 4.60688 4.65862 4.75511 4.90444 4.98625 5.04400 5.14821 5.18480 5.24679 5.49186 5.53053 5.70972 5.71774 5.76339 5.90900 6.30144 6.51742 6.89267 7.09013 7.15559 8.75207 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.002717 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.558086 B =10304.381848 C =12514.024648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.233 1.233 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.021 0.979 9 C 0.236 3.764 10 N -0.339 5.339 11 C 0.115 3.885 12 C -0.249 4.249 13 C 0.076 3.924 14 C -0.232 4.232 15 C 0.497 3.503 16 O -0.548 6.548 17 O -0.512 6.512 18 C 0.100 3.900 19 C -0.001 4.001 20 C -0.089 4.089 21 C -0.082 4.082 22 C -0.093 4.093 23 Br -0.040 7.040 24 C -0.088 4.088 25 C -0.100 4.100 26 N -0.315 5.315 27 H 0.273 0.727 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.184 0.816 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.416 0.584 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.429 -19.204 0.107 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.156 1.156 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.039 0.961 9 C 0.116 3.884 10 N -0.116 5.116 11 C -0.034 4.034 12 C -0.260 4.260 13 C 0.056 3.944 14 C -0.251 4.251 15 C 0.345 3.655 16 O -0.441 6.441 17 O -0.324 6.324 18 C -0.066 4.066 19 C -0.003 4.003 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.173 4.173 23 Br 0.045 6.955 24 C -0.107 4.107 25 C -0.120 4.120 26 N -0.136 5.136 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.193 0.807 32 H 0.195 0.805 33 H 0.275 0.725 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.459 -18.974 1.584 25.168 hybrid contribution -0.769 1.496 -1.034 1.974 sum 15.691 -17.478 0.550 23.495 Atomic orbital electron populations 1.70057 1.08605 1.28855 1.50482 1.25953 0.95819 1.03582 0.93139 0.85598 0.79716 0.77110 0.79808 1.18641 1.15570 1.20078 1.21142 0.90340 0.93624 1.53209 0.96067 1.19879 0.94386 0.74785 0.99306 1.48375 1.32681 1.10737 1.19794 1.23040 0.92027 0.95077 0.93290 1.20257 1.11191 0.94342 1.00258 1.22059 0.90866 0.88930 0.92523 1.21479 1.00747 1.08760 0.94123 1.20440 0.87046 0.76879 0.81087 1.91199 1.39684 1.44334 1.68881 1.85024 1.51381 1.74392 1.21594 1.22243 0.96988 0.92556 0.94801 1.18039 1.00228 0.89331 0.92742 1.21261 0.98957 0.90051 1.00683 1.21255 0.97824 0.99169 0.91879 1.22010 1.07831 0.92071 0.95387 1.96713 1.97326 1.25983 1.75473 1.21175 0.98396 0.90011 1.01153 1.21283 0.98889 0.98681 0.93140 1.77245 1.22975 0.97825 1.15546 0.91802 0.90888 0.93435 0.79941 0.80749 0.80488 0.72536 0.83917 0.81977 0.83124 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 41.70 27.47 68.60 1.88 43.59 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -32.75 9.76 25.60 0.25 -32.50 16 8 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 9 C 0.24 11.36 5.28 85.63 0.45 11.81 16 10 N -0.34 -15.53 3.62 -349.83 -1.27 -16.80 16 11 C 0.11 4.27 8.51 84.33 0.72 4.99 16 12 C -0.25 -8.11 4.60 -18.83 -0.09 -8.20 16 13 C 0.08 1.58 8.39 23.81 0.20 1.78 16 14 C -0.23 -4.43 9.96 22.40 0.22 -4.20 16 15 C 0.50 13.03 7.70 68.63 0.53 13.56 16 16 O -0.55 -20.42 13.09 19.26 0.25 -20.17 16 17 O -0.51 -10.66 13.54 -58.69 -0.79 -11.46 16 18 C 0.10 3.80 6.94 44.10 0.31 4.10 16 19 C 0.00 -0.03 5.84 -20.05 -0.12 -0.15 16 20 C -0.09 -2.13 9.17 22.49 0.21 -1.93 16 21 C -0.08 -1.61 9.77 22.25 0.22 -1.39 16 22 C -0.09 -1.95 6.23 22.36 0.14 -1.81 16 23 Br -0.04 -0.71 33.69 -20.37 -0.69 -1.40 16 24 C -0.09 -2.02 9.77 22.25 0.22 -1.80 16 25 C -0.10 -2.85 9.76 22.49 0.22 -2.64 16 26 N -0.31 -14.86 12.27 -44.46 -0.55 -15.41 16 27 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.07 3.14 7.10 -2.39 -0.02 3.12 16 29 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 30 H 0.18 5.73 7.94 -2.91 -0.02 5.70 16 31 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.42 6.49 8.98 -74.06 -0.67 5.83 16 34 H 0.14 3.10 6.88 -2.91 -0.02 3.08 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -81.49 350.65 3.49 -78.01 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.41 Total: 19.98 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.94 Total: -17.09 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -1.51 Total: -91.46 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.54 Total: -31.63 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.59 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -0.69 Total: -1.40 kcal Total: -81.49 3.49 -78.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035214606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.209 kcal (2) G-P(sol) polarization free energy of solvation -81.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds