Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.77980 * 2 1 4 4 C 1.53661 * 109.68907 * 120.71697 * 2 1 3 5 5 C 1.52964 * 109.31939 * 174.47750 * 4 2 1 6 6 C 1.52954 * 109.81994 * 296.26883 * 5 4 2 7 7 C 1.53234 * 109.40379 * 63.59909 * 6 5 4 8 8 H 1.09003 * 109.62564 * 65.08988 * 7 6 5 9 9 C 1.53003 * 109.62677 * 185.65881 * 7 6 5 10 10 C 1.50702 * 109.46775 * 184.04492 * 9 7 6 11 11 H 1.07998 * 120.00307 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99384 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00247 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99619 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47170 * 90.00097 * 14 12 10 16 16 H 1.48502 * 109.46747 * 210.00102 * 14 12 10 17 17 H 1.48495 * 109.47178 * 329.99637 * 14 12 10 18 18 C 1.51268 * 108.53640 * 305.37628 * 7 6 5 19 19 N 1.28020 * 120.84889 * 231.32333 * 18 7 6 20 20 N 1.40103 * 120.00105 * 208.71112 * 19 18 7 21 21 C 1.39600 * 119.99719 * 186.91473 * 20 19 18 22 22 C 1.38986 * 120.08385 * 7.04155 * 21 20 19 23 23 C 1.38063 * 119.91627 * 179.78946 * 22 21 20 24 24 C 1.38318 * 120.08470 * 0.46618 * 23 22 21 25 25 N 1.48027 * 119.92245 * 179.76530 * 24 23 22 26 26 O 1.21798 * 119.99862 * 180.02562 * 25 24 23 27 27 O 1.21799 * 119.99904 * 0.02562 * 25 24 23 28 28 C 1.38280 * 120.16008 * 359.78563 * 24 23 22 29 29 C 1.38111 * 120.07497 * 359.97438 * 28 24 23 30 30 N 1.48031 * 120.03612 * 179.97438 * 29 28 24 31 31 O 1.21796 * 119.99864 * 8.23189 * 30 29 28 32 32 O 1.21806 * 119.99910 * 188.22727 * 30 29 28 33 33 H 1.09005 * 109.47499 * 151.03922 * 1 2 3 34 34 H 1.08998 * 109.47044 * 271.04094 * 1 2 3 35 35 H 1.09001 * 109.47388 * 31.04075 * 1 2 3 36 36 H 1.08993 * 109.63033 * 54.45865 * 4 2 1 37 37 H 1.08994 * 109.41592 * 294.36180 * 4 2 1 38 38 H 1.09003 * 109.41133 * 176.16219 * 5 4 2 39 39 H 1.09002 * 109.35862 * 56.34170 * 5 4 2 40 40 H 1.08998 * 109.48203 * 303.62548 * 6 5 4 41 41 H 1.08996 * 109.48396 * 183.57789 * 6 5 4 42 42 H 1.08994 * 109.46808 * 304.04556 * 9 7 6 43 43 H 1.08996 * 109.46664 * 64.04654 * 9 7 6 44 44 H 0.97007 * 119.99782 * 179.97438 * 13 12 10 45 45 H 0.96996 * 119.99619 * 6.63909 * 20 19 18 46 46 H 1.08001 * 120.03882 * 359.97438 * 22 21 20 47 47 H 1.08006 * 119.95700 * 180.22460 * 23 22 21 48 48 H 1.07994 * 119.96357 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0477 -0.7390 1.2438 5 6 3.5710 -0.8545 1.1663 6 6 3.9655 -1.7115 -0.0376 7 6 3.5190 -1.0143 -1.3270 8 1 4.0687 -0.0808 -1.4477 9 6 3.7836 -1.9295 -2.5243 10 6 3.4361 -1.2032 -3.7982 11 1 3.0641 -0.1901 -3.7579 12 6 3.5930 -1.8322 -5.0150 13 7 4.0455 -3.0660 -5.0640 14 14 3.1629 -0.9316 -6.5942 15 1 4.3601 -0.2090 -7.0937 16 1 2.7138 -1.9112 -7.6159 17 1 2.0728 0.0410 -6.3282 18 6 2.0380 -0.7226 -1.2280 19 7 1.2359 -1.0737 -2.1619 20 7 0.0650 -0.3397 -2.3924 21 6 -0.8793 -0.8022 -3.3107 22 6 -0.7328 -2.0580 -3.8879 23 6 -1.6711 -2.5138 -4.7923 24 6 -2.7508 -1.7185 -5.1315 25 7 -3.7519 -2.2087 -6.1055 26 8 -4.7029 -1.5094 -6.4054 27 8 -3.6246 -3.3114 -6.6069 28 6 -2.8971 -0.4664 -4.5631 29 6 -1.9650 -0.0059 -3.6539 30 7 -2.1221 1.3349 -3.0464 31 8 -3.1447 1.9705 -3.2299 32 8 -1.2287 1.8023 -2.3631 33 1 -0.3634 -0.8992 -0.4976 34 1 -0.3633 0.0187 1.0275 35 1 -0.3634 0.8805 -0.5299 36 1 1.6092 -1.7359 1.2863 37 1 1.7705 -0.1812 2.1382 38 1 3.9461 -1.3175 2.0791 39 1 4.0039 0.1402 1.0603 40 1 3.4816 -2.6855 0.0352 41 1 5.0474 -1.8430 -0.0514 42 1 4.8368 -2.2097 -2.5415 43 1 3.1703 -2.8264 -2.4385 44 1 4.1556 -3.5086 -5.9201 45 1 -0.0913 0.4878 -1.9111 46 1 0.1124 -2.6777 -3.6270 47 1 -1.5599 -3.4911 -5.2386 48 1 -3.7410 0.1520 -4.8305 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036043839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = 83.756836 kcal Electronic energy + Delta-G solvation = -36126.068418 eV Core-core repulsion = 31382.686269 eV Total energy + Delta-G solvation = -4743.382149 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.63470 -42.13727 -40.20560 -39.33386 -37.15353 -36.59502 -36.22455 -34.18591 -33.35410 -32.35022 -32.18458 -30.38364 -29.25889 -26.99233 -26.89630 -26.24987 -24.80699 -23.45884 -22.96503 -22.36411 -21.20912 -20.55070 -20.19732 -19.34501 -18.97133 -18.52146 -18.15386 -17.87724 -17.71744 -17.53846 -16.69425 -16.35492 -15.37351 -15.10472 -14.75520 -14.65500 -14.46088 -14.23744 -13.94948 -13.51508 -13.33207 -13.24706 -12.59562 -12.57358 -12.42580 -12.10421 -11.98186 -11.89053 -11.67402 -11.60453 -11.57748 -11.40118 -11.26555 -11.22078 -11.19157 -11.17529 -10.98944 -10.74995 -10.65773 -10.55395 -10.20942 -10.12860 -10.06548 -9.81493 -9.17139 -9.12348 -8.44508 -7.80281 -6.08912 -4.06301 -0.39251 -0.24985 0.92191 1.00073 1.18190 1.43570 1.87587 2.60401 3.00184 3.21288 3.29852 3.32137 3.84467 4.16860 4.22650 4.30798 4.36540 4.40326 4.55982 4.64568 4.70018 4.99320 5.04529 5.10171 5.23485 5.28441 5.29229 5.35067 5.43124 5.48286 5.52017 5.59131 5.70070 5.78309 5.87145 5.89556 5.99511 6.08314 6.12846 6.14145 6.28104 6.35742 6.44252 6.57612 6.60835 6.75980 7.38375 7.50076 7.60767 7.61778 7.87333 8.23636 8.28870 8.93837 9.54278 11.02387 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007578 B = 0.004071 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.984350 B = 6876.065191 C = 9101.977472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.100 4.100 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.027 4.027 8 H 0.093 0.907 9 C 0.032 3.968 10 C -0.490 4.490 11 H 0.048 0.952 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.280 1.280 18 C 0.139 3.861 19 N -0.215 5.215 20 N -0.541 5.541 21 C 0.337 3.663 22 C -0.148 4.148 23 C 0.016 3.984 24 C -0.108 4.108 25 N 0.044 4.956 26 O -0.171 6.171 27 O -0.160 6.160 28 C 0.055 3.945 29 C -0.138 4.138 30 N 0.056 4.944 31 O -0.141 6.141 32 O -0.203 6.203 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.023 0.977 43 H 0.026 0.974 44 H 0.260 0.740 45 H 0.412 0.588 46 H 0.185 0.815 47 H 0.169 0.831 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 3.260 11.167 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.138 4.138 5 C -0.161 4.161 6 C -0.153 4.153 7 C -0.048 4.048 8 H 0.111 0.889 9 C -0.005 4.005 10 C -0.529 4.529 11 H 0.066 0.934 12 C -0.137 4.137 13 N -0.533 5.533 14 Si 0.704 3.296 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.205 1.205 18 C -0.053 4.053 19 N -0.018 5.018 20 N -0.266 5.266 21 C 0.217 3.783 22 C -0.170 4.170 23 C -0.005 4.005 24 C -0.196 4.196 25 N 0.561 4.439 26 O -0.383 6.383 27 O -0.375 6.375 28 C 0.035 3.965 29 C -0.230 4.230 30 N 0.567 4.433 31 O -0.362 6.362 32 O -0.400 6.400 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.271 0.729 46 H 0.202 0.798 47 H 0.186 0.814 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.863 2.210 10.654 12.865 hybrid contribution -0.731 1.646 -0.359 1.837 sum -7.595 3.856 10.295 13.361 Atomic orbital electron populations 1.22553 0.95542 1.02124 1.03362 1.21233 0.94935 1.01000 0.94811 0.88964 1.21606 0.96457 1.00340 0.95421 1.21592 0.94931 1.00819 0.98744 1.21724 1.01470 0.98923 0.93220 1.20677 0.85167 1.01501 0.97447 0.88924 1.19107 0.97361 0.94233 0.89841 1.20959 1.41952 0.99335 0.90671 0.93364 1.24822 0.95660 0.94740 0.98484 1.69926 1.46506 1.11602 1.25274 0.86868 0.78725 0.79726 0.84310 1.20706 1.21106 1.20499 1.25739 0.96585 0.93029 0.89917 1.75096 0.90226 1.15090 1.21365 1.48408 1.17727 1.23620 1.36823 1.17639 0.83476 0.91277 0.85944 1.21092 1.01937 0.94681 0.99339 1.21168 0.88259 0.99816 0.91300 1.20436 0.96930 0.97863 1.04342 1.43245 1.00618 1.00290 0.99741 1.94538 1.22370 1.55753 1.65675 1.94552 1.81795 1.06759 1.54400 1.20236 0.95990 0.92845 0.87469 1.20051 1.03726 0.87284 1.11949 1.43158 0.99789 1.01716 0.98682 1.94546 1.17729 1.59501 1.64440 1.94222 1.35083 1.71798 1.38858 0.91860 0.91138 0.91182 0.91663 0.91463 0.91850 0.91721 0.91728 0.91062 0.95880 0.95558 0.93055 0.72874 0.79810 0.81380 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 7.82 37.16 0.29 -1.76 16 2 C -0.10 -1.16 2.93 -91.15 -0.27 -1.43 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.10 -0.99 5.09 -26.41 -0.13 -1.12 16 5 C -0.12 -1.23 5.81 -26.77 -0.16 -1.38 16 6 C -0.11 -1.47 5.23 -26.63 -0.14 -1.61 16 7 C -0.03 -0.45 2.43 -91.37 -0.22 -0.67 16 8 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 9 C 0.03 0.69 4.13 -27.88 -0.12 0.57 16 10 C -0.49 -12.10 7.51 -34.44 -0.26 -12.36 16 11 H 0.05 1.21 7.46 -52.49 -0.39 0.82 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.56 13.29 55.43 0.74 -23.83 16 14 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.14 2.14 5.84 -78.35 -0.46 1.69 16 19 N -0.21 -3.71 7.42 35.88 0.27 -3.45 16 20 N -0.54 -8.54 4.07 32.42 0.13 -8.41 16 21 C 0.34 5.15 6.70 -83.78 -0.56 4.58 16 22 C -0.15 -2.17 9.51 -39.37 -0.37 -2.54 16 23 C 0.02 0.21 9.55 -39.62 -0.38 -0.17 16 24 C -0.11 -1.48 6.85 -79.90 -0.55 -2.03 16 25 N 0.04 0.65 4.45 33.99 0.15 0.80 16 26 O -0.17 -2.58 18.44 -29.46 -0.54 -3.12 16 27 O -0.16 -2.45 18.44 -29.46 -0.54 -3.00 16 28 C 0.06 0.72 9.06 -39.61 -0.36 0.36 16 29 C -0.14 -1.98 6.85 -79.72 -0.55 -2.52 16 30 N 0.06 0.83 4.45 34.07 0.15 0.99 16 31 O -0.14 -2.07 18.48 -29.46 -0.54 -2.61 16 32 O -0.20 -3.14 14.64 -29.46 -0.43 -3.57 16 33 H 0.06 0.81 6.11 -51.93 -0.32 0.50 16 34 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.07 0.85 5.00 -51.93 -0.26 0.59 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.41 6.10 2.08 -182.66 -0.38 5.72 16 46 H 0.18 2.92 7.38 -52.49 -0.39 2.53 16 47 H 0.17 1.91 7.60 -52.48 -0.40 1.51 16 48 H 0.18 2.02 7.18 -52.49 -0.38 1.64 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -28.28 395.66 -10.29 -38.56 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.28 Total: 4.57 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -4.32 Total: -18.81 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 1.44 Total: -33.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -2.06 Total: -12.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.28 -10.29 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036043839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.318 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds