Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.77980 * 2 1 4 4 C 1.53661 * 109.68907 * 120.71697 * 2 1 3 5 5 C 1.52964 * 109.31939 * 174.47750 * 4 2 1 6 6 C 1.52954 * 109.81994 * 296.26883 * 5 4 2 7 7 C 1.53234 * 109.40379 * 63.59909 * 6 5 4 8 8 H 1.09003 * 109.62564 * 65.08988 * 7 6 5 9 9 C 1.53003 * 109.62677 * 185.65881 * 7 6 5 10 10 C 1.50702 * 109.46775 * 184.04492 * 9 7 6 11 11 H 1.07998 * 120.00307 * 0.02562 * 10 9 7 12 12 C 1.37876 * 119.99384 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00247 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99619 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47170 * 90.00097 * 14 12 10 16 16 H 1.48502 * 109.46747 * 210.00102 * 14 12 10 17 17 H 1.48495 * 109.47178 * 329.99637 * 14 12 10 18 18 C 1.51268 * 108.53640 * 305.37628 * 7 6 5 19 19 N 1.28020 * 120.84889 * 231.32333 * 18 7 6 20 20 N 1.40103 * 120.00105 * 208.71112 * 19 18 7 21 21 C 1.39600 * 119.99719 * 186.91473 * 20 19 18 22 22 C 1.38986 * 120.08385 * 7.04155 * 21 20 19 23 23 C 1.38063 * 119.91627 * 179.78946 * 22 21 20 24 24 C 1.38318 * 120.08470 * 0.46618 * 23 22 21 25 25 N 1.48027 * 119.92245 * 179.76530 * 24 23 22 26 26 O 1.21798 * 119.99862 * 180.02562 * 25 24 23 27 27 O 1.21799 * 119.99904 * 0.02562 * 25 24 23 28 28 C 1.38280 * 120.16008 * 359.78563 * 24 23 22 29 29 C 1.38111 * 120.07497 * 359.97438 * 28 24 23 30 30 N 1.48031 * 120.03612 * 179.97438 * 29 28 24 31 31 O 1.21796 * 119.99864 * 8.23189 * 30 29 28 32 32 O 1.21806 * 119.99910 * 188.22727 * 30 29 28 33 33 H 1.09005 * 109.47499 * 151.03922 * 1 2 3 34 34 H 1.08998 * 109.47044 * 271.04094 * 1 2 3 35 35 H 1.09001 * 109.47388 * 31.04075 * 1 2 3 36 36 H 1.08993 * 109.63033 * 54.45865 * 4 2 1 37 37 H 1.08994 * 109.41592 * 294.36180 * 4 2 1 38 38 H 1.09003 * 109.41133 * 176.16219 * 5 4 2 39 39 H 1.09002 * 109.35862 * 56.34170 * 5 4 2 40 40 H 1.08998 * 109.48203 * 303.62548 * 6 5 4 41 41 H 1.08996 * 109.48396 * 183.57789 * 6 5 4 42 42 H 1.08994 * 109.46808 * 304.04556 * 9 7 6 43 43 H 1.08996 * 109.46664 * 64.04654 * 9 7 6 44 44 H 0.97007 * 119.99782 * 179.97438 * 13 12 10 45 45 H 0.96996 * 119.99619 * 6.63909 * 20 19 18 46 46 H 1.08001 * 120.03882 * 359.97438 * 22 21 20 47 47 H 1.08006 * 119.95700 * 180.22460 * 23 22 21 48 48 H 1.07994 * 119.96357 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0477 -0.7390 1.2438 5 6 3.5710 -0.8545 1.1663 6 6 3.9655 -1.7115 -0.0376 7 6 3.5190 -1.0143 -1.3270 8 1 4.0687 -0.0808 -1.4477 9 6 3.7836 -1.9295 -2.5243 10 6 3.4361 -1.2032 -3.7982 11 1 3.0641 -0.1901 -3.7579 12 6 3.5930 -1.8322 -5.0150 13 7 4.0455 -3.0660 -5.0640 14 14 3.1629 -0.9316 -6.5942 15 1 4.3601 -0.2090 -7.0937 16 1 2.7138 -1.9112 -7.6159 17 1 2.0728 0.0410 -6.3282 18 6 2.0380 -0.7226 -1.2280 19 7 1.2359 -1.0737 -2.1619 20 7 0.0650 -0.3397 -2.3924 21 6 -0.8793 -0.8022 -3.3107 22 6 -0.7328 -2.0580 -3.8879 23 6 -1.6711 -2.5138 -4.7923 24 6 -2.7508 -1.7185 -5.1315 25 7 -3.7519 -2.2087 -6.1055 26 8 -4.7029 -1.5094 -6.4054 27 8 -3.6246 -3.3114 -6.6069 28 6 -2.8971 -0.4664 -4.5631 29 6 -1.9650 -0.0059 -3.6539 30 7 -2.1221 1.3349 -3.0464 31 8 -3.1447 1.9705 -3.2299 32 8 -1.2287 1.8023 -2.3631 33 1 -0.3634 -0.8992 -0.4976 34 1 -0.3633 0.0187 1.0275 35 1 -0.3634 0.8805 -0.5299 36 1 1.6092 -1.7359 1.2863 37 1 1.7705 -0.1812 2.1382 38 1 3.9461 -1.3175 2.0791 39 1 4.0039 0.1402 1.0603 40 1 3.4816 -2.6855 0.0352 41 1 5.0474 -1.8430 -0.0514 42 1 4.8368 -2.2097 -2.5415 43 1 3.1703 -2.8264 -2.4385 44 1 4.1556 -3.5086 -5.9201 45 1 -0.0913 0.4878 -1.9111 46 1 0.1124 -2.6777 -3.6270 47 1 -1.5599 -3.4911 -5.2386 48 1 -3.7410 0.1520 -4.8305 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036043839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = 73.186869 kcal Electronic energy + Delta-G solvation = -36126.526766 eV Core-core repulsion = 31382.686269 eV Total energy + Delta-G solvation = -4743.840497 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.80047 -43.30791 -41.34987 -40.45385 -38.31666 -37.77814 -37.37189 -35.67173 -34.46230 -33.87488 -33.42053 -31.53141 -30.55922 -28.29684 -28.13998 -27.45073 -25.96816 -24.80597 -24.33264 -23.51280 -22.24423 -21.76372 -21.36005 -20.50558 -20.15374 -19.69005 -19.32088 -19.04053 -18.84642 -18.70365 -18.33918 -17.75075 -16.57839 -16.48941 -16.23521 -15.86029 -15.57363 -15.25211 -15.05736 -14.72103 -14.55378 -14.28633 -14.02358 -13.68177 -13.67697 -13.40687 -13.19019 -13.08999 -12.96146 -12.87501 -12.79693 -12.75342 -12.65476 -12.55841 -12.42665 -12.37352 -12.31855 -12.20894 -11.96120 -11.72585 -11.44429 -11.39535 -11.28064 -11.22423 -10.77185 -10.51407 -10.38242 -8.99656 -8.12678 -6.12299 -1.53559 -1.40147 -0.23702 -0.15003 0.01077 0.28214 0.69493 1.27510 1.32959 1.36970 1.45421 1.85273 2.38097 2.71094 3.06737 3.11735 3.21110 3.23626 3.35025 3.49012 3.67904 3.80929 3.98160 4.02887 4.12972 4.26196 4.28228 4.35970 4.37707 4.46795 4.49090 4.59057 4.70123 4.74099 4.88992 4.93916 5.01109 5.02497 5.09300 5.14732 5.19715 5.27789 5.33605 5.38053 5.50977 5.56673 5.60787 5.80819 5.92705 6.21395 6.32415 6.40697 6.96470 7.06700 7.50221 8.99229 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007578 B = 0.004071 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.984350 B = 6876.065191 C = 9101.977472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 H 0.107 0.893 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.025 4.025 8 H 0.098 0.902 9 C 0.039 3.961 10 C -0.479 4.479 11 H 0.042 0.958 12 C 0.020 3.980 13 N -0.926 5.926 14 Si 0.921 3.079 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.283 1.283 18 C 0.139 3.861 19 N -0.255 5.255 20 N -0.540 5.540 21 C 0.327 3.673 22 C -0.159 4.159 23 C 0.030 3.970 24 C -0.110 4.110 25 N 0.045 4.955 26 O -0.169 6.169 27 O -0.174 6.174 28 C 0.069 3.931 29 C -0.140 4.140 30 N 0.055 4.945 31 O -0.128 6.128 32 O -0.219 6.219 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.000 1.000 43 H 0.001 0.999 44 H 0.258 0.742 45 H 0.416 0.584 46 H 0.168 0.832 47 H 0.185 0.815 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 4.739 12.816 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.115 4.115 3 H 0.125 0.875 4 C -0.134 4.134 5 C -0.153 4.153 6 C -0.149 4.149 7 C -0.045 4.045 8 H 0.116 0.884 9 C 0.002 3.998 10 C -0.518 4.518 11 H 0.060 0.940 12 C -0.177 4.177 13 N -0.568 5.568 14 Si 0.749 3.251 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.209 1.209 18 C -0.053 4.053 19 N -0.059 5.059 20 N -0.265 5.265 21 C 0.207 3.793 22 C -0.182 4.182 23 C 0.008 3.992 24 C -0.198 4.198 25 N 0.561 4.439 26 O -0.383 6.383 27 O -0.386 6.386 28 C 0.049 3.951 29 C -0.232 4.232 30 N 0.566 4.434 31 O -0.353 6.353 32 O -0.412 6.412 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.067 0.933 45 H 0.276 0.724 46 H 0.185 0.815 47 H 0.202 0.798 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.659 3.681 12.318 14.965 hybrid contribution -0.524 1.198 -0.857 1.564 sum -8.184 4.879 11.461 14.904 Atomic orbital electron populations 1.22491 0.95283 1.00863 1.04506 1.21317 0.95090 1.01479 0.93643 0.87528 1.21640 0.96208 1.00215 0.95328 1.21560 0.95080 1.00882 0.97823 1.21676 1.01586 0.98739 0.92859 1.20542 0.86446 1.00663 0.96867 0.88427 1.18916 0.95154 0.94238 0.91461 1.21203 1.39986 0.98868 0.91716 0.93963 1.25361 0.96319 0.95283 1.00780 1.70016 1.48502 1.12771 1.25505 0.86149 0.78260 0.78683 0.82028 1.20452 1.21158 1.20891 1.25911 0.95760 0.92751 0.90830 1.74975 0.91456 1.16424 1.23013 1.48304 1.17496 1.23615 1.37111 1.17811 0.83826 0.91634 0.86079 1.20918 1.02133 0.94739 1.00452 1.21285 0.87416 1.00287 0.90173 1.20411 0.96816 0.98147 1.04381 1.43322 1.00656 1.00186 0.99737 1.94530 1.22499 1.55637 1.65626 1.94558 1.82055 1.07052 1.54951 1.20392 0.95880 0.92613 0.86263 1.20033 1.03773 0.87096 1.12324 1.43182 0.99762 1.01804 0.98670 1.94531 1.17497 1.59407 1.63879 1.94227 1.35353 1.72050 1.39537 0.93643 0.88719 0.91851 0.92267 0.88482 0.89553 0.90519 0.92729 0.90695 0.98164 0.98029 0.93311 0.72439 0.81483 0.79808 0.78673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 7.82 71.98 0.56 -3.13 16 2 C -0.09 -2.02 2.93 -11.14 -0.03 -2.05 16 3 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.10 -1.57 5.09 30.80 0.16 -1.42 16 5 C -0.12 -1.93 5.81 30.57 0.18 -1.75 16 6 C -0.11 -2.70 5.23 30.66 0.16 -2.54 16 7 C -0.02 -0.80 2.43 -11.28 -0.03 -0.82 16 8 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 9 C 0.04 1.77 4.13 29.85 0.12 1.89 16 10 C -0.48 -24.17 7.51 25.60 0.19 -23.98 16 11 H 0.04 2.15 7.46 -2.91 -0.02 2.13 16 12 C 0.02 1.07 5.46 84.65 0.46 1.53 16 13 N -0.93 -52.45 13.29 21.45 0.28 -52.16 16 14 Si 0.92 43.61 29.54 68.60 2.03 45.63 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 18 C 0.14 4.22 5.84 46.89 0.27 4.49 16 19 N -0.26 -8.97 7.42 -40.33 -0.30 -9.26 16 20 N -0.54 -17.10 4.07 -51.35 -0.21 -17.31 16 21 C 0.33 9.99 6.70 38.25 0.26 10.24 16 22 C -0.16 -4.77 9.51 22.41 0.21 -4.56 16 23 C 0.03 0.76 9.55 22.25 0.21 0.98 16 24 C -0.11 -2.87 6.85 36.40 0.25 -2.62 16 25 N 0.05 1.28 4.45 -46.39 -0.21 1.07 16 26 O -0.17 -4.81 18.44 18.89 0.35 -4.46 16 27 O -0.17 -5.17 18.44 18.89 0.35 -4.82 16 28 C 0.07 1.70 9.06 22.25 0.20 1.90 16 29 C -0.14 -3.88 6.85 36.51 0.25 -3.63 16 30 N 0.06 1.58 4.45 -46.12 -0.21 1.37 16 31 O -0.13 -3.51 18.48 18.89 0.35 -3.17 16 32 O -0.22 -6.56 14.64 18.88 0.28 -6.29 16 33 H 0.04 1.14 6.11 -2.38 -0.01 1.12 16 34 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 35 H 0.06 1.44 5.00 -2.39 -0.01 1.43 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.00 0.06 8.08 -2.39 -0.02 0.05 16 44 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 45 H 0.42 12.14 2.08 -214.25 -0.45 11.70 16 46 H 0.17 5.62 7.38 -2.91 -0.02 5.60 16 47 H 0.18 4.09 7.60 -2.91 -0.02 4.07 16 48 H 0.20 4.01 7.18 -2.91 -0.02 3.99 16 Total: -1.00 -61.87 395.66 6.72 -55.15 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.58 Total: 19.71 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.43 Total: -25.47 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -0.64 Total: -76.29 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 1.32 Total: -18.73 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.87 6.72 -55.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036043839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.333 kcal (2) G-P(sol) polarization free energy of solvation -61.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds