Wall clock time and date at job start Tue Mar 31 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38310 * 119.92741 * 2 1 4 4 C 1.38084 * 120.06856 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.93333 * 359.93636 * 4 3 2 6 6 N 1.39924 * 120.07069 * 180.32053 * 5 4 3 7 7 C 1.46499 * 119.99970 * 247.63752 * 6 5 4 8 8 C 1.50695 * 109.47297 * 89.99848 * 7 6 5 9 9 H 1.08005 * 120.00055 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00142 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99999 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00229 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.46827 * 89.99953 * 12 10 8 14 14 H 1.48491 * 109.47316 * 209.99940 * 12 10 8 15 15 H 1.48505 * 109.47038 * 330.00145 * 12 10 8 16 16 C 1.34776 * 120.00196 * 67.64294 * 6 5 4 17 17 O 1.21287 * 119.99792 * 4.73112 * 16 6 5 18 18 C 1.50698 * 120.00053 * 184.74321 * 16 6 5 19 19 O 1.42902 * 109.46840 * 179.97438 * 18 16 6 20 20 C 1.36000 * 116.99505 * 179.97438 * 19 18 16 21 21 C 1.38637 * 120.04312 * 359.72646 * 20 19 18 22 22 C 1.38184 * 119.99655 * 179.71944 * 21 20 19 23 23 C 1.38458 * 120.06705 * 0.55118 * 22 21 20 24 24 F 1.35101 * 119.95993 * 179.74448 * 23 22 21 25 25 C 1.38443 * 120.07492 * 359.72626 * 23 22 21 26 26 C 1.38329 * 120.00484 * 359.97438 * 25 23 22 27 27 F 1.35100 * 120.03243 * 179.97438 * 26 25 23 28 28 C 1.38856 * 119.85624 * 0.04273 * 5 4 3 29 29 C 1.38136 * 119.92756 * 0.02562 * 28 5 4 30 30 C 1.50700 * 119.96141 * 180.02562 * 29 28 5 31 31 H 1.09001 * 109.47239 * 270.01491 * 1 2 3 32 32 H 1.09002 * 109.47370 * 30.01845 * 1 2 3 33 33 H 1.09004 * 109.46908 * 150.02148 * 1 2 3 34 34 H 1.07997 * 119.96263 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.03154 * 179.97438 * 4 3 2 36 36 H 1.08999 * 109.47104 * 210.00620 * 7 6 5 37 37 H 1.09006 * 109.46820 * 330.00409 * 7 6 5 38 38 H 0.97001 * 120.00172 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.46524 * 299.98802 * 18 16 6 40 40 H 1.08989 * 109.47315 * 59.99459 * 18 16 6 41 41 H 1.08004 * 119.99584 * 359.97428 * 21 20 19 42 42 H 1.08001 * 119.96648 * 180.25848 * 22 21 20 43 43 H 1.08001 * 119.99325 * 180.02562 * 25 23 22 44 44 H 1.07995 * 120.03250 * 180.02562 * 28 5 4 45 45 H 1.08990 * 109.47628 * 89.99971 * 30 29 28 46 46 H 1.09008 * 109.47045 * 209.99813 * 30 29 28 47 47 H 1.08999 * 109.46964 * 329.98859 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2739 0.0001 0.0003 6 7 5.6732 0.0002 0.0065 7 6 6.4109 -0.4802 -1.1645 8 6 6.6662 0.6700 -2.1040 9 1 6.3144 1.6600 -1.8538 10 6 7.3496 0.4587 -3.2826 11 7 7.5728 1.4626 -4.1024 12 14 7.9587 -1.2534 -3.7152 13 1 6.9106 -1.9720 -4.4837 14 1 9.1905 -1.1475 -4.5377 15 1 8.2589 -2.0018 -2.4682 16 6 6.3422 0.4421 1.0898 17 8 5.7344 0.7589 2.0904 18 6 7.8455 0.5429 1.0576 19 8 8.3169 1.0335 2.3143 20 6 9.6614 1.1838 2.4533 21 6 10.5081 0.8604 1.4042 22 6 11.8736 1.0190 1.5444 23 6 12.3986 1.4900 2.7359 24 9 13.7343 1.6393 2.8724 25 6 11.5562 1.8084 3.7874 26 6 10.1883 1.6566 3.6482 27 9 9.3657 1.9667 4.6741 28 6 3.5782 -1.2016 0.0007 29 6 2.1968 -1.1982 -0.0002 30 6 1.4410 -2.5019 0.0009 31 1 -0.3634 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6553 2.1329 0.0004 35 1 4.1161 2.1384 -0.0010 36 1 7.3619 -0.9065 -0.8450 37 1 5.8240 -1.2435 -1.6756 38 1 8.0540 1.3141 -4.9314 39 1 8.2717 -0.4424 0.8689 40 1 8.1469 1.2272 0.2647 41 1 10.1000 0.4884 0.4760 42 1 12.5324 0.7709 0.7253 43 1 11.9670 2.1760 4.7161 44 1 4.1165 -2.1378 0.0017 45 1 1.2581 -2.8151 1.0287 46 1 0.4891 -2.3704 -0.5138 47 1 2.0290 -3.2632 -0.5119 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040068590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:08 Heat of formation + Delta-G solvation = -103.684860 kcal Electronic energy + Delta-G solvation = -33630.124299 eV Core-core repulsion = 28800.659713 eV Total energy + Delta-G solvation = -4829.464587 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.143 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.04291 -48.88319 -40.47600 -39.79435 -38.52306 -37.13978 -35.53002 -33.10347 -32.32885 -31.67659 -31.07836 -30.01310 -28.36203 -28.14211 -27.11376 -25.52885 -23.46945 -22.85001 -22.62728 -21.72630 -21.07656 -18.89319 -18.64321 -17.83924 -17.39102 -17.28744 -16.53722 -16.43604 -16.22773 -15.79570 -15.71636 -15.48289 -15.18774 -15.17562 -14.83659 -14.48223 -14.46656 -14.23624 -14.05134 -13.68498 -13.56999 -13.14496 -12.84683 -12.71896 -12.70354 -12.53429 -12.42464 -12.33114 -12.16889 -12.03399 -11.86162 -11.50058 -11.48517 -11.31254 -11.02848 -10.97890 -10.85261 -10.73949 -10.44683 -9.82441 -9.45680 -9.26523 -8.89428 -8.64243 -8.40239 -8.22284 -7.75804 -6.37669 -4.41993 0.79115 0.90124 1.58262 1.71177 2.62428 2.94050 3.04267 3.10219 3.15252 3.21492 3.66833 3.85149 4.01246 4.10401 4.22139 4.44355 4.64533 4.83474 4.89881 4.95580 4.97482 5.06575 5.15590 5.22800 5.25194 5.25641 5.47991 5.53907 5.56185 5.62415 5.70396 5.74072 5.76052 5.85129 5.88507 5.89514 5.93327 5.97372 6.04984 6.24387 6.37764 6.39321 6.42834 6.64196 6.84544 6.88488 7.00804 7.13488 7.22491 7.45246 7.74964 8.17233 8.56063 8.68291 9.19120 10.74294 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008459 B = 0.002854 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.346199 B = 9809.597054 C =12229.219545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.101 4.101 5 C 0.170 3.830 6 N -0.550 5.550 7 C 0.206 3.794 8 C -0.549 4.549 9 H 0.082 0.918 10 C 0.081 3.919 11 N -0.883 5.883 12 Si 0.867 3.133 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C 0.527 3.473 17 O -0.528 6.528 18 C 0.042 3.958 19 O -0.282 6.282 20 C 0.099 3.901 21 C -0.153 4.153 22 C -0.117 4.117 23 C 0.084 3.916 24 F -0.135 7.135 25 C -0.154 4.154 26 C 0.098 3.902 27 F -0.122 7.122 28 C -0.120 4.120 29 C -0.083 4.083 30 C -0.112 4.112 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.269 0.731 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -4.831 8.863 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.120 4.120 5 C 0.080 3.920 6 N -0.279 5.279 7 C 0.086 3.914 8 C -0.587 4.587 9 H 0.100 0.900 10 C -0.124 4.124 11 N -0.519 5.519 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.315 3.685 17 O -0.404 6.404 18 C -0.036 4.036 19 O -0.194 6.194 20 C 0.051 3.949 21 C -0.172 4.172 22 C -0.136 4.136 23 C 0.064 3.936 24 F -0.114 7.114 25 C -0.174 4.174 26 C 0.078 3.922 27 F -0.101 7.101 28 C -0.140 4.140 29 C -0.084 4.084 30 C -0.169 4.169 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.585 -4.558 9.387 10.451 hybrid contribution 0.778 -0.711 -0.704 1.268 sum 0.193 -5.269 8.683 10.158 Atomic orbital electron populations 1.20800 0.91589 1.02513 1.01918 1.19662 0.95691 0.92626 1.01947 1.20816 0.93519 0.97357 1.00925 1.21214 0.94097 0.97680 0.99013 1.17402 0.82472 0.93008 0.99160 1.45388 1.03629 1.62785 1.16129 1.20025 0.91563 0.96506 0.83265 1.21296 1.37977 0.95741 1.03721 0.90038 1.24841 0.95124 0.96733 0.95659 1.69875 1.39937 1.30971 1.11155 0.86991 0.79307 0.84892 0.79462 1.19655 1.20590 1.18843 1.19762 0.88429 0.77499 0.82823 1.90718 1.69628 1.48343 1.31674 1.22719 0.93616 1.01937 0.85317 1.86190 1.17209 1.80227 1.35763 1.19084 0.84146 0.98100 0.93551 1.21214 0.92946 1.03716 0.99344 1.21033 0.95550 1.00128 0.96897 1.17134 0.77454 1.04164 0.94836 1.91510 1.29852 1.93749 1.96301 1.20824 0.90861 1.04893 1.00820 1.16509 0.87147 1.04480 0.84040 1.91550 1.71463 1.90636 1.56415 1.20989 0.93516 0.97220 1.02236 1.19472 0.92918 0.94842 1.01168 1.20808 0.99902 0.94142 1.02018 0.91547 0.91838 0.91430 0.86059 0.85999 0.94633 0.94442 0.92096 0.88779 0.86496 0.82645 0.83552 0.82917 0.86119 0.91446 0.91284 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.60 36.01 0.35 -0.83 16 2 C -0.10 -1.43 5.88 -104.59 -0.62 -2.04 16 3 C -0.11 -1.70 9.69 -39.61 -0.38 -2.09 16 4 C -0.10 -1.89 9.54 -39.39 -0.38 -2.27 16 5 C 0.17 3.31 4.76 -83.69 -0.40 2.91 16 6 N -0.55 -11.00 2.51 -114.74 -0.29 -11.29 16 7 C 0.21 4.23 3.95 -5.20 -0.02 4.20 16 8 C -0.55 -13.41 9.71 -34.44 -0.33 -13.74 16 9 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 10 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.88 -24.14 13.96 55.43 0.77 -23.36 16 12 Si 0.87 18.28 27.47 -169.99 -4.67 13.61 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.26 -5.08 6.54 56.52 0.37 -4.71 16 16 C 0.53 10.60 7.60 -10.99 -0.08 10.52 16 17 O -0.53 -12.05 16.25 -14.36 -0.23 -12.28 16 18 C 0.04 0.71 3.88 36.00 0.14 0.85 16 19 O -0.28 -4.95 9.53 -39.65 -0.38 -5.33 16 20 C 0.10 1.46 6.69 -39.19 -0.26 1.20 16 21 C -0.15 -1.92 9.04 -39.45 -0.36 -2.28 16 22 C -0.12 -1.30 10.02 -39.52 -0.40 -1.69 16 23 C 0.08 0.96 7.30 -39.42 -0.29 0.67 16 24 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 25 C -0.15 -1.77 10.00 -39.47 -0.39 -2.17 16 26 C 0.10 1.38 7.31 -39.31 -0.29 1.09 16 27 F -0.12 -1.89 17.11 2.25 0.04 -1.85 16 28 C -0.12 -2.04 9.34 -39.39 -0.37 -2.41 16 29 C -0.08 -1.23 5.88 -104.65 -0.62 -1.85 16 30 C -0.11 -1.23 9.60 36.01 0.35 -0.89 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.07 0.62 5.94 -51.93 -0.31 0.32 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 36 H 0.04 0.67 5.53 -51.93 -0.29 0.38 16 37 H 0.04 0.76 7.29 -51.93 -0.38 0.39 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 40 H 0.12 1.98 7.45 -51.93 -0.39 1.60 16 41 H 0.16 1.81 6.30 -52.48 -0.33 1.48 16 42 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.65 5.94 -51.92 -0.31 0.34 16 47 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -30.40 404.41 -8.81 -39.21 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.74 Total: 5.61 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.45 Total: -8.88 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.49 Total: -34.65 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.61 Total: -17.61 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.67 Total: 13.61 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.40 -8.81 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040068590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.478 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds