Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35953 * 116.99693 * 2 1 4 4 C 1.38031 * 119.99995 * 0.26155 * 3 2 1 5 5 C 1.40060 * 119.82992 * 180.25403 * 4 3 2 6 6 C 1.46838 * 120.07685 * 179.76471 * 5 4 3 7 7 C 1.35308 * 119.99445 * 179.71543 * 6 5 4 8 8 C 1.41768 * 119.99660 * 179.97438 * 7 6 5 9 9 O 1.21775 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.47810 * 119.99772 * 180.02562 * 8 7 6 11 11 C 1.39697 * 120.11580 * 359.95603 * 10 8 7 12 12 C 1.37825 * 119.90398 * 180.02562 * 11 10 8 13 13 C 1.38662 * 120.13166 * 0.02562 * 12 11 10 14 14 F 1.35100 * 119.87946 * 179.97438 * 13 12 11 15 15 C 1.38755 * 120.23226 * 359.97438 * 13 12 11 16 16 Cl 1.73605 * 119.95063 * 180.02562 * 15 13 12 17 17 C 1.37956 * 120.09688 * 0.02562 * 15 13 12 18 18 C 1.40109 * 119.83437 * 359.48606 * 5 4 3 19 19 C 1.37601 * 119.99615 * 0.25750 * 18 5 4 20 20 C 1.39106 * 120.16688 * 359.97438 * 19 18 5 21 21 O 1.35579 * 119.91620 * 180.02562 * 20 19 18 22 22 C 1.34735 * 116.99998 * 354.37602 * 21 20 19 23 23 H 1.08000 * 120.00047 * 5.06637 * 22 21 20 24 24 C 1.38747 * 119.99778 * 185.06771 * 22 21 20 25 25 N 1.31492 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47520 * 89.99853 * 26 24 22 28 28 H 1.48500 * 109.47009 * 210.00140 * 26 24 22 29 29 H 1.48506 * 109.47022 * 329.99570 * 26 24 22 30 30 H 1.08999 * 109.46833 * 59.99662 * 1 2 3 31 31 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46753 * 299.99610 * 1 2 3 33 33 H 1.07997 * 120.08351 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00482 * 359.72469 * 6 5 4 35 35 H 1.07997 * 120.00073 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.04832 * 0.02562 * 11 10 8 37 37 H 1.07996 * 119.93536 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.06182 * 179.70352 * 17 15 13 39 39 H 1.07995 * 119.99963 * 180.23553 * 18 5 4 40 40 H 1.07994 * 119.91730 * 180.02562 * 19 18 5 41 41 H 0.96996 * 120.00004 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2944 2.3690 0.0055 5 6 1.9339 3.6151 0.0001 6 6 1.1394 4.8499 0.0006 7 6 1.7589 6.0528 0.0012 8 6 0.9918 7.2451 0.0012 9 8 -0.2245 7.1866 0.0011 10 6 1.6686 8.5592 0.0012 11 6 3.0638 8.6291 0.0023 12 6 3.6903 9.8567 0.0029 13 6 2.9385 11.0219 0.0030 14 9 3.5578 12.2225 0.0041 15 6 1.5523 10.9589 0.0020 16 17 0.6183 12.4222 0.0015 17 6 0.9154 9.7352 0.0014 18 6 3.3335 3.6803 0.0000 19 6 4.0761 2.5219 0.0000 20 6 3.4410 1.2843 0.0004 21 8 4.1777 0.1462 0.0009 22 6 5.5130 0.2819 -0.1168 23 1 5.9573 1.2662 -0.1236 24 6 6.3173 -0.8431 -0.2293 25 7 5.7765 -2.0416 -0.2205 26 14 8.1688 -0.6550 -0.3917 27 1 8.7866 -0.6536 0.9585 28 1 8.7136 -1.7866 -1.1842 29 1 8.4779 0.6246 -1.0790 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2159 2.3140 0.0101 34 1 0.0606 4.7981 0.0007 35 1 2.8376 6.1047 0.0008 36 1 3.6507 7.7224 0.0026 37 1 4.7688 9.9114 0.0032 38 1 -0.1635 9.6868 0.0054 39 1 3.8293 4.6397 -0.0003 40 1 5.1548 2.5737 0.0004 41 1 6.3388 -2.8280 -0.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040140040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = -76.403058 kcal Electronic energy + Delta-G solvation = -29147.164566 eV Core-core repulsion = 24513.667626 eV Total energy + Delta-G solvation = -4633.496940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.071 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.42188 -40.31221 -39.79823 -38.44072 -37.81046 -36.90291 -36.64716 -33.31595 -32.49118 -31.46119 -31.31802 -29.85298 -28.82098 -26.79724 -25.82452 -24.84990 -23.57794 -22.84886 -21.87724 -20.84457 -18.99903 -18.46729 -18.34210 -17.80400 -17.08501 -16.88374 -16.21328 -16.19972 -15.64565 -15.42088 -15.30176 -14.86004 -14.75156 -14.54989 -14.40497 -14.10356 -13.97991 -13.73092 -13.66838 -13.57703 -13.28345 -13.25444 -12.54826 -12.28349 -11.95135 -11.88462 -11.83960 -11.75316 -11.56486 -11.39136 -11.20533 -11.10649 -10.88446 -10.80040 -10.60216 -9.86797 -9.71615 -9.53571 -9.50322 -9.14661 -8.96279 -8.10777 -7.04187 -6.75804 -4.24451 0.00396 0.58343 0.85861 1.55861 2.01092 2.20321 2.82928 2.97404 2.99976 3.03687 3.54941 3.55882 3.72318 3.84028 3.94825 4.16414 4.34276 4.55578 4.66661 4.76927 4.85646 4.88847 5.06623 5.16459 5.30871 5.39746 5.42644 5.44553 5.46928 5.50227 5.56743 5.70140 5.75838 5.79415 5.88143 6.08847 6.13705 6.32712 6.35748 6.45915 6.73034 6.88152 6.96092 7.12817 7.35020 7.61662 7.64785 7.97118 8.66655 9.34464 10.39224 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.001745 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.906346 B =16045.385954 C =18386.046089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.132 4.132 5 C -0.181 4.181 6 C 0.063 3.937 7 C -0.317 4.317 8 C 0.431 3.569 9 O -0.481 6.481 10 C -0.148 4.148 11 C -0.041 4.041 12 C -0.153 4.153 13 C 0.130 3.870 14 F -0.124 7.124 15 C -0.088 4.088 16 Cl -0.048 7.048 17 C -0.033 4.033 18 C -0.049 4.049 19 C -0.229 4.229 20 C 0.151 3.849 21 O -0.140 6.140 22 C -0.389 4.389 23 H 0.100 0.900 24 C 0.042 3.958 25 N -0.838 5.838 26 Si 0.947 3.053 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.264 1.264 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 18.991 0.261 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.152 4.152 5 C -0.183 4.183 6 C 0.044 3.956 7 C -0.336 4.336 8 C 0.317 3.683 9 O -0.363 6.363 10 C -0.150 4.150 11 C -0.059 4.059 12 C -0.172 4.172 13 C 0.109 3.891 14 F -0.102 7.102 15 C -0.115 4.115 16 Cl -0.019 7.019 17 C -0.051 4.051 18 C -0.067 4.067 19 C -0.248 4.248 20 C 0.093 3.907 21 O -0.040 6.040 22 C -0.464 4.464 23 H 0.118 0.882 24 C -0.166 4.166 25 N -0.469 5.469 26 Si 0.770 3.230 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.188 1.188 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.942 18.394 0.261 19.332 hybrid contribution 0.848 0.709 -0.065 1.107 sum -5.095 19.103 0.196 19.772 Atomic orbital electron populations 1.22930 0.80051 1.03174 1.00446 1.86239 1.19670 1.26138 1.89685 1.18039 0.89347 0.84676 1.07309 1.20904 0.98640 0.90916 1.04715 1.18182 0.92871 0.91410 1.15794 1.22539 0.99207 0.91338 0.82468 1.21979 1.01077 0.92766 1.17766 1.18929 0.88344 0.88014 0.73007 1.90646 1.15890 1.89703 1.40085 1.20729 0.94158 0.95367 1.04701 1.21523 0.93577 0.98034 0.92757 1.21171 1.01364 0.90416 1.04206 1.17689 0.88783 0.81619 1.00962 1.91558 1.82557 1.42816 1.93285 1.20899 0.90374 0.89744 1.10515 1.98397 1.72313 1.34162 1.97003 1.21193 1.01717 0.88733 0.93490 1.20961 0.92444 0.97401 0.95915 1.20829 1.00777 0.90703 1.12510 1.18924 0.88267 0.87577 0.95941 1.83963 1.19883 1.26159 1.73966 1.21600 0.78256 0.95246 1.51276 0.88250 1.25479 1.01166 0.94097 0.95886 1.70028 1.36969 0.97955 1.41912 0.85614 0.79468 0.78871 0.79008 1.19487 1.19928 1.18785 0.93386 0.88897 0.93402 0.85771 0.85848 0.85374 0.82976 0.83049 0.82904 0.86461 0.84396 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.14 10.28 -34.20 -0.35 -6.49 16 3 C 0.05 1.04 6.70 -39.13 -0.26 0.78 16 4 C -0.13 -2.21 8.78 -38.97 -0.34 -2.55 16 5 C -0.18 -2.86 5.87 -105.03 -0.62 -3.47 16 6 C 0.06 0.86 9.42 -37.15 -0.35 0.51 16 7 C -0.32 -3.83 8.73 -39.28 -0.34 -4.18 16 8 C 0.43 5.38 6.91 -34.32 -0.24 5.15 16 9 O -0.48 -7.25 16.11 5.12 0.08 -7.17 16 10 C -0.15 -1.54 5.88 -104.91 -0.62 -2.15 16 11 C -0.04 -0.33 9.43 -39.19 -0.37 -0.70 16 12 C -0.15 -1.17 10.01 -39.58 -0.40 -1.57 16 13 C 0.13 1.21 7.28 -39.23 -0.29 0.93 16 14 F -0.12 -1.22 16.83 2.25 0.04 -1.18 16 15 C -0.09 -0.87 6.32 -39.49 -0.25 -1.11 16 16 Cl -0.05 -0.45 28.61 -51.86 -1.48 -1.94 16 17 C -0.03 -0.33 9.37 -39.16 -0.37 -0.70 16 18 C -0.05 -0.78 9.40 -39.11 -0.37 -1.15 16 19 C -0.23 -4.39 9.14 -39.49 -0.36 -4.75 16 20 C 0.15 3.39 6.67 -38.73 -0.26 3.13 16 21 O -0.14 -3.74 9.52 -13.77 -0.13 -3.87 16 22 C -0.39 -9.91 9.48 30.92 0.29 -9.62 16 23 H 0.10 2.27 5.18 -52.49 -0.27 2.00 16 24 C 0.04 1.05 5.50 -17.51 -0.10 0.96 16 25 N -0.84 -22.84 13.67 55.48 0.76 -22.08 16 26 Si 0.95 18.60 29.55 -169.99 -5.02 13.57 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 29 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 30 H 0.05 0.58 7.67 -51.93 -0.40 0.19 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 33 H 0.12 1.72 6.28 -52.49 -0.33 1.39 16 34 H 0.12 1.62 7.45 -52.49 -0.39 1.22 16 35 H 0.13 1.29 4.23 -52.49 -0.22 1.06 16 36 H 0.15 0.94 6.20 -52.48 -0.33 0.62 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.54 7.65 -52.49 -0.40 1.14 16 39 H 0.12 1.47 6.15 -52.49 -0.32 1.15 16 40 H 0.14 2.56 5.61 -52.49 -0.29 2.27 16 41 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -30.04 379.16 -7.96 -38.00 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.33 Total: 4.56 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -4.23 Total: -19.11 kcal Atomic # 7 Polarization: -22.84 SS G_CDS: 0.76 Total: -22.08 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.40 Total: -17.54 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.04 -7.96 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040140040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.402 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds