Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35953 * 116.99693 * 2 1 4 4 C 1.38031 * 119.99995 * 0.26155 * 3 2 1 5 5 C 1.40060 * 119.82992 * 180.25403 * 4 3 2 6 6 C 1.46838 * 120.07685 * 179.76471 * 5 4 3 7 7 C 1.35308 * 119.99445 * 179.71543 * 6 5 4 8 8 C 1.41768 * 119.99660 * 179.97438 * 7 6 5 9 9 O 1.21775 * 120.00139 * 0.02562 * 8 7 6 10 10 C 1.47810 * 119.99772 * 180.02562 * 8 7 6 11 11 C 1.39697 * 120.11580 * 359.95603 * 10 8 7 12 12 C 1.37825 * 119.90398 * 180.02562 * 11 10 8 13 13 C 1.38662 * 120.13166 * 0.02562 * 12 11 10 14 14 F 1.35100 * 119.87946 * 179.97438 * 13 12 11 15 15 C 1.38755 * 120.23226 * 359.97438 * 13 12 11 16 16 Cl 1.73605 * 119.95063 * 180.02562 * 15 13 12 17 17 C 1.37956 * 120.09688 * 0.02562 * 15 13 12 18 18 C 1.40109 * 119.83437 * 359.48606 * 5 4 3 19 19 C 1.37601 * 119.99615 * 0.25750 * 18 5 4 20 20 C 1.39106 * 120.16688 * 359.97438 * 19 18 5 21 21 O 1.35579 * 119.91620 * 180.02562 * 20 19 18 22 22 C 1.34735 * 116.99998 * 354.37602 * 21 20 19 23 23 H 1.08000 * 120.00047 * 5.06637 * 22 21 20 24 24 C 1.38747 * 119.99778 * 185.06771 * 22 21 20 25 25 N 1.31492 * 120.00236 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47520 * 89.99853 * 26 24 22 28 28 H 1.48500 * 109.47009 * 210.00140 * 26 24 22 29 29 H 1.48506 * 109.47022 * 329.99570 * 26 24 22 30 30 H 1.08999 * 109.46833 * 59.99662 * 1 2 3 31 31 H 1.09001 * 109.46778 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46753 * 299.99610 * 1 2 3 33 33 H 1.07997 * 120.08351 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00482 * 359.72469 * 6 5 4 35 35 H 1.07997 * 120.00073 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.04832 * 0.02562 * 11 10 8 37 37 H 1.07996 * 119.93536 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.06182 * 179.70352 * 17 15 13 39 39 H 1.07995 * 119.99963 * 180.23553 * 18 5 4 40 40 H 1.07994 * 119.91730 * 180.02562 * 19 18 5 41 41 H 0.96996 * 120.00004 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2944 2.3690 0.0055 5 6 1.9339 3.6151 0.0001 6 6 1.1394 4.8499 0.0006 7 6 1.7589 6.0528 0.0012 8 6 0.9918 7.2451 0.0012 9 8 -0.2245 7.1866 0.0011 10 6 1.6686 8.5592 0.0012 11 6 3.0638 8.6291 0.0023 12 6 3.6903 9.8567 0.0029 13 6 2.9385 11.0219 0.0030 14 9 3.5578 12.2225 0.0041 15 6 1.5523 10.9589 0.0020 16 17 0.6183 12.4222 0.0015 17 6 0.9154 9.7352 0.0014 18 6 3.3335 3.6803 0.0000 19 6 4.0761 2.5219 0.0000 20 6 3.4410 1.2843 0.0004 21 8 4.1777 0.1462 0.0009 22 6 5.5130 0.2819 -0.1168 23 1 5.9573 1.2662 -0.1236 24 6 6.3173 -0.8431 -0.2293 25 7 5.7765 -2.0416 -0.2205 26 14 8.1688 -0.6550 -0.3917 27 1 8.7866 -0.6536 0.9585 28 1 8.7136 -1.7866 -1.1842 29 1 8.4779 0.6246 -1.0790 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2159 2.3140 0.0101 34 1 0.0606 4.7981 0.0007 35 1 2.8376 6.1047 0.0008 36 1 3.6507 7.7224 0.0026 37 1 4.7688 9.9114 0.0032 38 1 -0.1635 9.6868 0.0054 39 1 3.8293 4.6397 -0.0003 40 1 5.1548 2.5737 0.0004 41 1 6.3388 -2.8280 -0.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040140040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -91.967872 kcal Electronic energy + Delta-G solvation = -29147.839507 eV Core-core repulsion = 24513.667626 eV Total energy + Delta-G solvation = -4634.171881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.071 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.15452 -41.39375 -41.10107 -39.36368 -39.30766 -38.05226 -37.63011 -34.69920 -34.02734 -32.22437 -32.16488 -31.25186 -30.10289 -27.98427 -27.44020 -25.98004 -24.33705 -23.87582 -23.30133 -22.01129 -20.10091 -19.92438 -19.46485 -18.99086 -18.03673 -17.89648 -17.43419 -16.99940 -16.94235 -16.67412 -16.41815 -16.22940 -15.84959 -15.59555 -15.56559 -15.28490 -15.22254 -15.04936 -14.89929 -14.54924 -14.06333 -14.03975 -13.92891 -13.63262 -13.31342 -13.20219 -12.90012 -12.68755 -12.59484 -12.58721 -12.40104 -12.16171 -12.12154 -12.07827 -12.00778 -11.32222 -10.98681 -10.90756 -10.50657 -10.19539 -9.88846 -9.47847 -8.54050 -8.47472 -6.11059 -0.89792 -0.21614 -0.06505 0.56694 0.83791 0.99339 1.38918 1.48289 1.56704 1.91660 2.17704 2.55894 2.59631 2.84953 2.87377 3.01264 3.15041 3.35583 3.51575 3.79817 3.87544 3.95174 3.97603 4.14552 4.23424 4.32195 4.39369 4.42854 4.48520 4.54308 4.62881 4.67227 4.71947 4.73525 4.88480 4.95667 5.02613 5.08840 5.14395 5.31894 5.45908 5.51789 5.54209 5.76064 5.92246 5.98466 6.58027 6.60643 6.95183 7.75027 8.73992 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.001745 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.906346 B =16045.385954 C =18386.046089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.034 3.966 4 C -0.130 4.130 5 C -0.146 4.146 6 C 0.042 3.958 7 C -0.276 4.276 8 C 0.434 3.566 9 O -0.504 6.504 10 C -0.164 4.164 11 C -0.028 4.028 12 C -0.142 4.142 13 C 0.125 3.875 14 F -0.128 7.128 15 C -0.098 4.098 16 Cl -0.051 7.051 17 C -0.037 4.037 18 C -0.055 4.055 19 C -0.221 4.221 20 C 0.105 3.895 21 O -0.210 6.210 22 C -0.414 4.414 23 H 0.113 0.887 24 C -0.022 4.022 25 N -0.913 5.913 26 Si 1.021 2.979 27 H -0.263 1.263 28 H -0.276 1.276 29 H -0.246 1.246 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.182 0.818 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.139 0.861 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 23.706 0.233 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C -0.011 4.011 4 C -0.148 4.148 5 C -0.147 4.147 6 C 0.023 3.977 7 C -0.294 4.294 8 C 0.321 3.679 9 O -0.387 6.387 10 C -0.165 4.165 11 C -0.046 4.046 12 C -0.161 4.161 13 C 0.105 3.895 14 F -0.106 7.106 15 C -0.126 4.126 16 Cl -0.023 7.023 17 C -0.056 4.056 18 C -0.073 4.073 19 C -0.241 4.241 20 C 0.053 3.947 21 O -0.115 6.115 22 C -0.489 4.489 23 H 0.131 0.869 24 C -0.221 4.221 25 N -0.549 5.549 26 Si 0.840 3.160 27 H -0.188 1.188 28 H -0.201 1.201 29 H -0.169 1.169 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.149 0.851 35 H 0.177 0.823 36 H 0.199 0.801 37 H 0.200 0.800 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.157 0.843 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.060 23.205 0.237 23.985 hybrid contribution 0.307 0.029 -0.035 0.310 sum -5.753 23.235 0.202 23.937 Atomic orbital electron populations 1.23274 0.77104 1.04953 1.02098 1.86196 1.22939 1.26943 1.89918 1.18402 0.89171 0.85852 1.07678 1.21301 1.00149 0.90110 1.03285 1.18573 0.93205 0.91974 1.10932 1.22488 0.99570 0.90678 0.84955 1.22382 1.02671 0.91898 1.12480 1.19224 0.87927 0.89048 0.71732 1.90661 1.17301 1.90202 1.40546 1.20570 0.95195 0.94038 1.06714 1.21815 0.92521 0.99340 0.90941 1.21501 1.02763 0.89362 1.02426 1.17955 0.88703 0.82126 1.00756 1.91555 1.82531 1.43275 1.93282 1.20962 0.90813 0.89584 1.11214 1.98396 1.72504 1.34300 1.97053 1.21165 1.01630 0.89071 0.93748 1.21378 0.92460 0.98110 0.95366 1.21067 1.01268 0.90735 1.10988 1.19667 0.89544 0.88216 0.97292 1.83962 1.20352 1.28034 1.79142 1.22020 0.78719 0.95991 1.52201 0.86943 1.26706 1.06209 0.93564 0.95637 1.70190 1.38603 0.98883 1.47258 0.84554 0.73087 0.79238 0.79164 1.18790 1.20081 1.16877 0.91602 0.87383 0.91528 0.82686 0.85092 0.82280 0.80106 0.80049 0.83488 0.81812 0.84312 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.34 -14.56 10.28 -79.05 -0.81 -15.38 16 3 C 0.03 1.40 6.70 22.56 0.15 1.55 16 4 C -0.13 -4.04 8.78 22.66 0.20 -3.84 16 5 C -0.15 -4.00 5.87 -20.13 -0.12 -4.12 16 6 C 0.04 0.91 9.42 23.85 0.22 1.14 16 7 C -0.28 -4.96 8.73 22.47 0.20 -4.76 16 8 C 0.43 8.75 6.91 25.68 0.18 8.93 16 9 O -0.50 -13.39 16.11 -4.59 -0.07 -13.46 16 10 C -0.16 -2.66 5.88 -20.05 -0.12 -2.77 16 11 C -0.03 -0.29 9.43 22.52 0.21 -0.08 16 12 C -0.14 -1.43 10.01 22.27 0.22 -1.21 16 13 C 0.12 1.88 7.28 22.49 0.16 2.05 16 14 F -0.13 -2.14 16.83 44.97 0.76 -1.38 16 15 C -0.10 -1.67 6.32 22.33 0.14 -1.53 16 16 Cl -0.05 -0.89 28.61 -2.72 -0.08 -0.97 16 17 C -0.04 -0.65 9.37 22.54 0.21 -0.44 16 18 C -0.06 -1.55 9.40 22.57 0.21 -1.34 16 19 C -0.22 -8.35 9.14 22.33 0.20 -8.15 16 20 C 0.11 4.95 6.67 22.82 0.15 5.10 16 21 O -0.21 -12.19 9.52 -5.92 -0.06 -12.25 16 22 C -0.41 -22.63 9.48 67.94 0.64 -21.99 16 23 H 0.11 5.40 5.18 -2.91 -0.02 5.38 16 24 C -0.02 -1.21 5.50 84.87 0.47 -0.75 16 25 N -0.91 -54.52 13.67 21.63 0.30 -54.22 16 26 Si 1.02 40.15 29.55 68.60 2.03 42.18 16 27 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 28 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 29 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 30 H 0.07 1.51 7.67 -2.39 -0.02 1.49 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 1.51 7.65 -2.39 -0.02 1.49 16 33 H 0.16 3.77 6.28 -2.91 -0.02 3.76 16 34 H 0.13 2.80 7.45 -2.91 -0.02 2.78 16 35 H 0.16 1.88 4.23 -2.91 -0.01 1.87 16 36 H 0.18 0.80 6.20 -2.91 -0.02 0.78 16 37 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 38 H 0.15 2.69 7.65 -2.91 -0.02 2.67 16 39 H 0.16 2.98 6.15 -2.91 -0.02 2.96 16 40 H 0.14 5.12 5.61 -2.91 -0.02 5.10 16 41 H 0.27 14.96 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -75.03 379.16 7.64 -67.39 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.13 Total: 18.66 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.45 Total: -30.56 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.30 Total: -54.22 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.94 Total: -41.08 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.76 Total: -1.38 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -75.03 7.64 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040140040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.576 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds