Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37932 * 120.00295 * 56.80937 * 3 2 1 5 5 C 1.46280 * 119.99944 * 353.73042 * 4 3 2 6 6 C 1.40223 * 120.25532 * 327.61195 * 5 4 3 7 7 C 1.37617 * 119.87097 * 180.25264 * 6 5 4 8 8 C 1.38722 * 120.39432 * 359.74668 * 7 6 5 9 9 C 1.38040 * 120.51365 * 359.97438 * 8 7 6 10 10 C 1.38788 * 120.12138 * 359.97438 * 9 8 7 11 11 O 1.35428 * 120.19733 * 180.02562 * 10 9 8 12 12 C 1.34736 * 117.00151 * 5.79337 * 11 10 9 13 13 H 1.08001 * 120.00236 * 354.89426 * 12 11 10 14 14 C 1.38782 * 119.99952 * 174.62602 * 12 11 10 15 15 N 1.31462 * 120.00345 * 0.26739 * 14 12 11 16 16 Si 1.86795 * 119.99931 * 180.27365 * 14 12 11 17 17 H 1.48504 * 109.47229 * 59.99812 * 16 14 12 18 18 H 1.48504 * 109.47259 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47343 * 299.99526 * 16 14 12 20 20 C 1.47149 * 119.99800 * 236.80953 * 3 2 1 21 21 O 1.21796 * 119.99829 * 186.18560 * 20 3 2 22 22 C 1.46925 * 119.99930 * 6.18881 * 20 3 2 23 23 C 1.36480 * 126.76934 * 6.05428 * 22 20 3 24 24 N 1.35527 * 109.73674 * 179.83128 * 23 22 20 25 25 H 0.96999 * 124.78451 * 180.18327 * 24 23 22 26 26 C 1.37993 * 110.42943 * 0.44888 * 24 23 22 27 27 C 1.39100 * 133.14272 * 179.70796 * 26 24 23 28 28 C 1.37983 * 119.91449 * 180.02562 * 27 26 24 29 29 F 1.35094 * 119.70993 * 180.02562 * 28 27 26 30 30 C 1.38939 * 120.57560 * 0.02562 * 28 27 26 31 31 C 1.37750 * 120.27619 * 359.95068 * 30 28 27 32 32 C 1.39269 * 119.70775 * 0.05244 * 31 30 28 33 33 H 1.07997 * 119.99960 * 173.73106 * 4 3 2 34 34 H 1.08000 * 120.06358 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.80786 * 179.76155 * 7 6 5 36 36 H 1.07995 * 119.74650 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.94173 * 180.02562 * 9 8 7 38 38 H 0.97001 * 120.00496 * 180.02562 * 15 14 12 39 39 H 1.07999 * 125.13340 * 359.96564 * 23 22 20 40 40 H 1.08008 * 120.04245 * 0.04967 * 27 26 24 41 41 H 1.08003 * 119.86059 * 180.02562 * 30 28 27 42 42 H 1.07999 * 120.14373 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2580 -0.6529 -0.9996 5 6 2.5335 -1.4605 -1.9809 6 6 1.3620 -2.1372 -1.6123 7 6 0.6896 -2.8989 -2.5405 8 6 1.1609 -2.9976 -3.8415 9 6 2.3093 -2.3337 -4.2232 10 6 3.0037 -1.5587 -3.3048 11 8 4.1303 -0.9062 -3.6778 12 6 4.4598 -0.9517 -4.9834 13 1 3.8826 -1.5588 -5.6652 14 6 5.5374 -0.2142 -5.4533 15 7 6.2400 0.5248 -4.6236 16 14 5.9895 -0.2713 -7.2648 17 1 4.8433 0.2112 -8.0765 18 1 7.1686 0.5979 -7.5085 19 1 6.3156 -1.6680 -7.6499 20 6 3.3033 0.6986 1.0665 21 8 4.5159 0.7959 1.0068 22 6 2.5748 1.2780 2.2032 23 6 1.2419 1.1529 2.4687 24 7 0.9370 1.8232 3.6065 25 1 0.0507 1.8758 3.9971 26 6 2.0640 2.4251 4.1276 27 6 2.2874 3.2151 5.2506 28 6 3.5566 3.6848 5.5200 29 9 3.7690 4.4512 6.6121 30 6 4.6179 3.3764 4.6781 31 6 4.4146 2.5950 3.5620 32 6 3.1384 2.1147 3.2789 33 1 4.3331 -0.5685 -1.0578 34 1 0.9905 -2.0643 -0.6008 35 1 -0.2105 -3.4227 -2.2546 36 1 0.6252 -3.5986 -4.5613 37 1 2.6678 -2.4167 -5.2387 38 1 6.9930 1.0406 -4.9520 39 1 0.5370 0.6011 1.8646 40 1 1.4686 3.4601 5.9109 41 1 5.6066 3.7499 4.9003 42 1 5.2412 2.3562 2.9092 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044026995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = 36.969939 kcal Electronic energy + Delta-G solvation = -31512.603839 eV Core-core repulsion = 26918.748722 eV Total energy + Delta-G solvation = -4593.855118 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.101 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.04482 -41.63437 -39.60767 -38.67807 -37.23278 -36.89955 -36.24763 -33.48695 -32.65458 -32.24522 -30.19706 -29.76590 -29.30108 -28.53575 -25.72437 -24.87393 -23.44951 -22.90165 -22.08193 -21.63147 -20.94803 -19.80696 -18.62837 -18.36855 -17.46548 -17.32454 -16.43694 -16.30015 -15.81607 -15.57642 -15.37425 -15.02122 -14.87368 -14.63595 -14.59716 -14.39151 -14.26806 -14.04866 -13.93661 -13.86395 -13.74478 -13.17707 -13.11892 -12.85093 -12.72848 -12.45421 -12.07074 -11.97907 -11.80641 -11.61661 -11.60187 -11.33886 -11.11300 -11.02681 -10.92044 -10.65422 -9.90467 -9.80678 -9.70712 -9.44124 -9.13517 -8.53661 -8.19094 -7.99344 -7.44200 -6.78919 -4.33773 0.47742 0.76408 1.18103 1.74836 2.08548 2.25378 2.63935 2.86853 2.96798 2.98981 3.02158 3.03562 3.52734 3.70263 3.89242 4.07771 4.17978 4.31302 4.32673 4.44423 4.60827 4.72730 4.80732 4.86660 4.98039 5.04407 5.20757 5.31703 5.37409 5.41674 5.52419 5.73959 5.77563 5.83012 5.86679 6.00321 6.15932 6.25127 6.28867 6.33249 6.35068 6.45123 6.50736 6.78740 6.79002 6.91498 7.02787 7.07135 7.07718 7.44826 7.63215 7.66106 7.93602 8.63393 9.24896 10.35726 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002235 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.461901 B =12523.519192 C =14729.759402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.290 3.710 3 C -0.231 4.231 4 C 0.140 3.860 5 C -0.207 4.207 6 C -0.033 4.033 7 C -0.218 4.218 8 C -0.045 4.045 9 C -0.231 4.231 10 C 0.181 3.819 11 O -0.146 6.146 12 C -0.395 4.395 13 H 0.100 0.900 14 C 0.046 3.954 15 N -0.836 5.836 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.266 1.266 20 C 0.483 3.517 21 O -0.460 6.460 22 C -0.236 4.236 23 C 0.110 3.890 24 N -0.576 5.576 25 H 0.421 0.579 26 C 0.107 3.893 27 C -0.165 4.165 28 C 0.116 3.884 29 F -0.140 7.140 30 C -0.173 4.173 31 C -0.031 4.031 32 C -0.074 4.074 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.279 0.721 39 H 0.187 0.813 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 0.772 13.057 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.020 4.020 3 C -0.236 4.236 4 C 0.118 3.882 5 C -0.209 4.209 6 C -0.052 4.052 7 C -0.237 4.237 8 C -0.063 4.063 9 C -0.250 4.250 10 C 0.122 3.878 11 O -0.045 6.045 12 C -0.470 4.470 13 H 0.117 0.883 14 C -0.163 4.163 15 N -0.467 5.467 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.191 1.191 20 C 0.364 3.636 21 O -0.338 6.338 22 C -0.244 4.244 23 C -0.022 4.022 24 N -0.177 5.177 25 H 0.259 0.741 26 C 0.002 3.998 27 C -0.186 4.186 28 C 0.095 3.905 29 F -0.118 7.118 30 C -0.193 4.193 31 C -0.050 4.050 32 C -0.078 4.078 33 H 0.176 0.824 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.204 0.796 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.048 1.206 13.238 15.540 hybrid contribution -0.070 0.073 -0.616 0.625 sum -8.119 1.279 12.622 15.062 Atomic orbital electron populations 1.81195 1.11649 1.11587 1.09370 1.25426 0.92665 0.92010 0.91916 1.18315 0.84928 1.15545 1.04859 1.23178 1.00679 0.80561 0.83815 1.17996 1.00271 1.10047 0.92571 1.21107 0.91281 0.93987 0.98787 1.20543 1.02603 1.06433 0.94132 1.21023 0.94355 0.95526 0.95443 1.21172 0.98949 1.03842 1.01051 1.19444 0.85821 0.90476 0.92044 1.83813 1.32235 1.59942 1.28515 1.21495 1.14880 1.29523 0.81068 0.88309 1.25445 0.95167 0.94801 1.00889 1.69971 1.16944 1.24111 1.35641 0.85693 0.78779 0.79084 0.79519 1.19151 1.19881 1.19102 1.18603 0.87408 0.75549 0.82021 1.90681 1.14784 1.51549 1.76741 1.20672 0.93152 1.09839 1.00754 1.23076 0.96867 0.94673 0.87590 1.41622 1.09871 1.43924 1.22288 0.74087 1.17817 0.86804 0.99046 0.96176 1.19718 0.96822 1.03585 0.98517 1.17136 0.93480 0.94434 0.85421 1.91490 1.95524 1.73066 1.51748 1.20972 0.98856 1.03195 0.96262 1.20597 0.95926 0.93224 0.95213 1.18901 0.93165 1.00652 0.95127 0.82373 0.86479 0.86990 0.86799 0.84760 0.91062 0.79634 0.84899 0.84320 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.21 16.67 41.84 0.70 -6.51 16 2 C 0.29 4.53 8.69 -22.48 -0.20 4.33 16 3 C -0.23 -3.75 5.84 -104.47 -0.61 -4.36 16 4 C 0.14 2.52 9.04 -36.46 -0.33 2.19 16 5 C -0.21 -3.92 5.56 -104.94 -0.58 -4.50 16 6 C -0.03 -0.56 8.29 -39.06 -0.32 -0.89 16 7 C -0.22 -3.48 10.02 -39.63 -0.40 -3.88 16 8 C -0.04 -0.73 10.03 -39.48 -0.40 -1.12 16 9 C -0.23 -4.39 9.16 -39.45 -0.36 -4.75 16 10 C 0.18 3.84 6.67 -38.40 -0.26 3.59 16 11 O -0.15 -3.63 9.18 1.30 0.01 -3.62 16 12 C -0.39 -9.72 9.49 30.93 0.29 -9.43 16 13 H 0.10 2.21 5.21 -52.49 -0.27 1.94 16 14 C 0.05 1.12 5.50 -17.51 -0.10 1.02 16 15 N -0.84 -22.09 13.67 55.49 0.76 -21.34 16 16 Si 0.95 18.38 29.55 -169.99 -5.02 13.36 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 C 0.48 7.87 7.09 -32.45 -0.23 7.64 16 21 O -0.46 -8.48 16.16 5.10 0.08 -8.40 16 22 C -0.24 -3.39 6.22 -103.26 -0.64 -4.03 16 23 C 0.11 1.31 10.68 -16.55 -0.18 1.14 16 24 N -0.58 -5.59 5.99 -10.44 -0.06 -5.65 16 25 H 0.42 2.56 8.96 -40.82 -0.37 2.19 16 26 C 0.11 1.24 7.25 -83.96 -0.61 0.63 16 27 C -0.16 -1.69 10.04 -39.36 -0.40 -2.09 16 28 C 0.12 1.28 7.28 -39.42 -0.29 0.99 16 29 F -0.14 -1.55 17.25 2.25 0.04 -1.52 16 30 C -0.17 -1.91 10.01 -39.50 -0.40 -2.30 16 31 C -0.03 -0.40 9.86 -39.38 -0.39 -0.78 16 32 C -0.07 -1.02 6.27 -104.94 -0.66 -1.67 16 33 H 0.16 2.98 7.56 -52.49 -0.40 2.58 16 34 H 0.12 1.82 5.68 -52.49 -0.30 1.52 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 2.48 5.64 -52.48 -0.30 2.19 16 38 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.19 2.19 4.31 -52.49 -0.23 1.96 16 40 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.15 1.88 7.47 -52.49 -0.39 1.49 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -28.55 378.12 -7.91 -36.46 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.07 Total: 9.80 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -7.04 Total: -18.29 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.39 Total: -33.50 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.55 -7.91 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044026995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.428 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds