Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47428 * 2 1 4 4 H 1.09004 * 109.46876 * 305.00046 * 3 2 1 5 5 O 1.42903 * 109.47347 * 64.99809 * 3 2 1 6 6 C 1.35805 * 117.00088 * 267.40974 * 5 3 2 7 7 C 1.36671 * 120.22940 * 356.02248 * 6 5 3 8 8 C 1.39192 * 120.91771 * 179.97438 * 7 6 5 9 9 C 1.36170 * 121.06346 * 0.05335 * 8 7 6 10 10 C 1.40523 * 119.77129 * 359.96604 * 9 8 7 11 11 C 1.40558 * 121.27787 * 180.02562 * 10 9 8 12 12 C 1.36107 * 119.64542 * 179.97438 * 11 10 9 13 13 C 1.39351 * 120.98223 * 0.03882 * 12 11 10 14 14 C 1.36139 * 120.97921 * 359.97438 * 13 12 11 15 15 C 1.40420 * 119.65849 * 359.97438 * 14 13 12 16 16 C 1.50697 * 109.47267 * 185.00353 * 3 2 1 17 17 O 1.21285 * 119.99641 * 244.99472 * 16 3 2 18 18 N 1.34768 * 120.00515 * 64.99867 * 16 3 2 19 19 C 1.39244 * 120.00347 * 185.24587 * 18 16 3 20 20 C 1.39481 * 119.83401 * 213.97620 * 19 18 16 21 21 C 1.36372 * 120.16620 * 179.75704 * 20 19 18 22 22 C 1.40870 * 119.82983 * 0.51853 * 21 20 19 23 23 C 1.41152 * 120.16042 * 179.71636 * 22 21 20 24 24 H 1.08001 * 119.99318 * 210.60329 * 23 22 21 25 25 C 1.39898 * 120.00234 * 30.60593 * 23 22 21 26 26 N 1.30875 * 120.00445 * 9.05575 * 25 23 22 27 27 Si 1.86802 * 119.99868 * 189.05918 * 25 23 22 28 28 H 1.48499 * 109.47262 * 90.00120 * 27 25 23 29 29 H 1.48500 * 109.47110 * 209.99751 * 27 25 23 30 30 H 1.48500 * 109.47051 * 329.99581 * 27 25 23 31 31 C 1.40863 * 119.67057 * 359.73624 * 22 21 20 32 32 C 1.36379 * 119.82908 * 0.02562 * 31 22 21 33 33 H 1.08999 * 109.46677 * 300.00363 * 1 2 3 34 34 H 1.09000 * 109.46962 * 59.99876 * 1 2 3 35 35 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 36 36 H 1.08993 * 109.47334 * 239.99827 * 2 1 3 37 37 H 1.09000 * 109.46962 * 120.00124 * 2 1 3 38 38 H 1.08005 * 119.53758 * 0.02562 * 7 6 5 39 39 H 1.08006 * 119.46419 * 180.02562 * 8 7 6 40 40 H 1.08001 * 120.11287 * 180.23613 * 9 8 7 41 41 H 1.08000 * 120.17507 * 359.95895 * 11 10 9 42 42 H 1.07995 * 119.50647 * 180.02562 * 12 11 10 43 43 H 1.07998 * 119.51539 * 180.02562 * 13 12 11 44 44 H 1.07998 * 120.17329 * 179.97438 * 14 13 12 45 45 H 0.97003 * 120.00170 * 5.23821 * 18 16 3 46 46 H 1.08003 * 119.91214 * 0.02562 * 20 19 18 47 47 H 1.08000 * 120.07965 * 180.24989 * 21 20 19 48 48 H 0.96991 * 120.00175 * 180.02562 * 26 25 23 49 49 H 1.08005 * 120.08602 * 179.97438 * 31 22 21 50 50 H 1.08001 * 119.91315 * 179.97438 * 32 31 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.4905 2.7684 1.2204 7 6 -0.2313 2.8967 0.0670 8 6 -1.4340 3.5971 0.0502 9 6 -1.9261 4.1756 1.1805 10 6 -1.2137 4.0669 2.3869 11 6 -1.6925 4.6510 3.5723 12 6 -0.9757 4.5247 4.7223 13 6 0.2289 3.8244 4.7435 14 6 0.7231 3.2459 3.6146 15 6 0.0108 3.3543 2.4093 16 6 3.5419 1.4442 -0.1239 17 8 4.2251 1.8611 0.7874 18 7 4.1260 0.9827 -1.2474 19 6 5.5129 0.8821 -1.3203 20 6 6.1621 1.1077 -2.5340 21 6 7.5205 1.0158 -2.6119 22 6 8.2672 0.6815 -1.4652 23 6 9.6730 0.5786 -1.5393 24 1 10.1988 -0.1095 -0.8940 25 6 10.3852 1.3680 -2.4486 26 7 9.7760 2.3240 -3.1028 27 14 12.2057 1.0576 -2.7293 28 1 12.3765 0.0749 -3.8295 29 1 12.8745 2.3318 -3.0957 30 1 12.8135 0.5192 -1.4859 31 6 7.6039 0.4499 -0.2442 32 6 6.2453 0.5502 -0.1806 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 0.0005 36 1 1.8933 -0.5138 -0.8899 37 1 1.8933 -0.5139 0.8900 38 1 0.1362 2.4475 -0.8439 39 1 -1.9856 3.6836 -0.8744 40 1 -2.8628 4.7123 1.1508 41 1 -2.6241 5.1974 3.5704 42 1 -1.3459 4.9741 5.6319 43 1 0.7782 3.7384 5.6694 44 1 1.6582 2.7065 3.6458 45 1 3.5803 0.7205 -2.0052 46 1 5.5879 1.3599 -3.4132 47 1 8.0221 1.1947 -3.5515 48 1 10.2697 2.8710 -3.7334 49 1 8.1697 0.1927 0.6391 50 1 5.7353 0.3726 0.7546 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044844960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = -3.741700 kcal Electronic energy + Delta-G solvation = -32725.356208 eV Core-core repulsion = 28454.455011 eV Total energy + Delta-G solvation = -4270.901196 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.24566 -39.96172 -38.70214 -37.18443 -36.17162 -34.57904 -34.02856 -32.87243 -32.13415 -30.51527 -29.67350 -29.36935 -28.91252 -27.50849 -24.86023 -23.75681 -23.41243 -22.37608 -22.06359 -21.39995 -20.74135 -19.71929 -18.47328 -17.91039 -17.35338 -17.22370 -16.71834 -16.26634 -16.05562 -15.60589 -15.20237 -14.99740 -14.57225 -14.52822 -14.04783 -13.97738 -13.94409 -13.81534 -13.44812 -13.18170 -12.95811 -12.77419 -12.68591 -12.37241 -12.22534 -12.13077 -12.07275 -11.83606 -11.70364 -11.42778 -11.36918 -11.17647 -11.16768 -11.08698 -11.02185 -10.76823 -10.67790 -9.98823 -9.66443 -9.57138 -9.43681 -9.17723 -8.95164 -8.86188 -7.71577 -7.59866 -6.97119 -6.71950 -4.35698 0.42724 0.78186 1.89492 2.41952 2.62498 2.81798 2.94115 3.04278 3.07295 3.10757 3.29086 3.72277 3.92858 3.93372 4.38453 4.48589 4.54723 4.59500 4.64630 4.69716 4.74900 4.84651 4.90599 4.99533 5.06185 5.18771 5.22952 5.24932 5.38082 5.42284 5.63669 5.65966 5.74870 5.79212 5.85452 5.87567 5.98572 6.03312 6.13754 6.21205 6.34442 6.36184 6.37729 6.49738 6.68266 6.76366 6.84722 7.01145 7.13669 7.16708 7.24474 7.55428 7.65283 7.81482 8.00004 8.18007 8.24509 8.55060 8.65108 8.86443 8.94261 10.21429 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.001777 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.015883 B =15757.342554 C =16410.602393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.101 0.899 5 O -0.275 6.275 6 C 0.159 3.841 7 C -0.233 4.233 8 C -0.069 4.069 9 C -0.154 4.154 10 C -0.016 4.016 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.135 4.135 14 C -0.076 4.076 15 C -0.072 4.072 16 C 0.499 3.501 17 O -0.506 6.506 18 N -0.644 5.644 19 C -0.002 4.002 20 C -0.115 4.115 21 C -0.145 4.145 22 C 0.106 3.894 23 C -0.458 4.458 24 H 0.078 0.922 25 C 0.071 3.929 26 N -0.802 5.802 27 Si 0.913 3.087 28 H -0.269 1.269 29 H -0.278 1.278 30 H -0.263 1.263 31 C -0.209 4.209 32 C -0.078 4.078 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.280 0.720 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 0.867 5.190 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.118 0.882 5 O -0.186 6.186 6 C 0.113 3.887 7 C -0.252 4.252 8 C -0.088 4.088 9 C -0.172 4.172 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.119 4.119 13 C -0.153 4.153 14 C -0.094 4.094 15 C -0.073 4.073 16 C 0.283 3.717 17 O -0.380 6.380 18 N -0.289 5.289 19 C -0.094 4.094 20 C -0.135 4.135 21 C -0.164 4.164 22 C 0.103 3.897 23 C -0.488 4.488 24 H 0.096 0.904 25 C -0.145 4.145 26 N -0.428 5.428 27 Si 0.738 3.262 28 H -0.194 1.194 29 H -0.203 1.203 30 H -0.187 1.187 31 C -0.229 4.229 32 C -0.098 4.098 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.229 0.771 46 H 0.109 0.891 47 H 0.141 0.859 48 H 0.091 0.909 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.120 1.322 5.873 23.891 hybrid contribution 0.490 -0.035 -0.837 0.970 sum -22.630 1.287 5.037 23.220 Atomic orbital electron populations 1.21973 0.94499 1.02462 1.02410 1.22011 0.97165 0.94002 1.04523 1.22429 0.94096 0.95020 0.87818 0.88194 1.86172 1.34973 1.63202 1.34276 1.18733 0.85454 0.91000 0.93532 1.20920 0.98637 1.07880 0.97739 1.20527 0.94679 0.95271 0.98283 1.20842 1.00855 1.03484 0.92055 1.17881 0.93002 0.96336 0.94418 1.20942 1.00366 1.00851 0.91926 1.20907 0.94853 0.98025 0.98140 1.20852 0.96661 0.99159 0.98626 1.21114 0.99284 0.97552 0.91419 1.17450 0.95921 1.01631 0.92276 1.20012 0.88411 0.79221 0.84007 1.90749 1.64186 1.44238 1.38848 1.42840 1.06753 1.63609 1.15695 1.17136 0.80172 1.15909 0.96196 1.20234 0.95272 1.03165 0.94815 1.20944 0.91270 1.04862 0.99366 1.17696 0.93464 0.88409 0.90139 1.19549 0.91879 1.19971 1.17441 0.90410 1.25908 1.01049 0.93573 0.94009 1.69798 1.38305 1.14104 1.20636 0.86232 0.81763 0.78563 0.79664 1.19372 1.20317 1.18657 1.20724 0.93237 1.11826 0.97137 1.20244 0.94185 0.99284 0.96122 0.92079 0.92182 0.91951 0.89492 0.89934 0.85017 0.85841 0.85631 0.85471 0.85990 0.85820 0.84680 0.77130 0.89053 0.85880 0.90935 0.88544 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.44 37.16 0.31 -1.01 16 2 C -0.14 -1.41 5.61 -26.73 -0.15 -1.56 16 3 C 0.07 0.85 2.58 -27.89 -0.07 0.77 16 4 H 0.10 1.04 5.40 -51.93 -0.28 0.76 16 5 O -0.27 -4.02 8.45 -38.99 -0.33 -4.35 16 6 C 0.16 2.05 5.25 -39.12 -0.21 1.84 16 7 C -0.23 -2.45 7.04 -39.79 -0.28 -2.73 16 8 C -0.07 -0.63 9.94 -39.97 -0.40 -1.03 16 9 C -0.15 -1.43 9.77 -39.46 -0.39 -1.82 16 10 C -0.02 -0.18 5.74 -106.84 -0.61 -0.79 16 11 C -0.12 -1.13 9.77 -39.47 -0.39 -1.51 16 12 C -0.10 -0.90 9.95 -39.93 -0.40 -1.30 16 13 C -0.13 -1.38 9.95 -39.92 -0.40 -1.78 16 14 C -0.08 -0.94 9.56 -39.52 -0.38 -1.32 16 15 C -0.07 -0.93 5.75 -106.73 -0.61 -1.54 16 16 C 0.50 8.70 6.90 -10.99 -0.08 8.62 16 17 O -0.51 -11.33 14.22 -14.31 -0.20 -11.53 16 18 N -0.64 -10.86 5.19 -9.74 -0.05 -10.91 16 19 C 0.00 -0.05 6.27 -83.57 -0.52 -0.57 16 20 C -0.11 -2.56 9.89 -39.79 -0.39 -2.95 16 21 C -0.14 -3.66 8.59 -39.26 -0.34 -3.99 16 22 C 0.11 2.80 5.54 -106.80 -0.59 2.21 16 23 C -0.46 -12.10 9.04 -37.86 -0.34 -12.44 16 24 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 25 C 0.07 1.78 5.27 -17.34 -0.09 1.69 16 26 N -0.80 -20.72 10.87 55.55 0.60 -20.11 16 27 Si 0.91 18.69 29.57 -169.99 -5.03 13.67 16 28 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 29 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 30 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 31 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 32 C -0.08 -1.86 8.57 -39.79 -0.34 -2.21 16 33 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 34 H 0.06 0.43 6.82 -51.93 -0.35 0.07 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.13 1.16 4.49 -52.48 -0.24 0.93 16 39 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 45 H 0.40 4.98 8.70 -40.82 -0.36 4.62 16 46 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 47 H 0.12 3.19 6.29 -52.49 -0.33 2.86 16 48 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 49 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 50 H 0.10 2.37 6.46 -52.49 -0.34 2.03 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -31.99 407.51 -12.29 -44.27 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.38 Total: 11.91 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -7.04 Total: -29.08 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.55 Total: -31.03 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.53 Total: -15.88 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.99 -12.29 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044844960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds