Wall clock time and date at job start Tue Mar 31 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99927 * 2 1 4 4 H 1.48506 * 109.47124 * 239.99750 * 3 2 1 5 5 H 1.48500 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47416 * 119.99951 * 3 2 1 7 7 C 1.39934 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99880 * 162.31995 * 7 2 1 9 9 C 1.41439 * 120.00432 * 342.31277 * 7 2 1 10 10 C 1.40782 * 120.17879 * 155.18669 * 9 7 2 11 11 C 1.37718 * 120.03899 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41198 * 359.97438 * 11 10 9 13 13 C 1.39880 * 120.35844 * 0.03634 * 12 11 10 14 14 C 1.47886 * 120.02455 * 179.97438 * 13 12 11 15 15 O 1.21554 * 120.00138 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00239 * 359.96555 * 14 13 12 17 17 N 1.40101 * 120.00353 * 179.97438 * 16 14 13 18 18 C 1.34778 * 120.00083 * 179.97438 * 17 16 14 19 19 O 1.21696 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.46673 * 119.99789 * 180.02562 * 18 17 16 21 21 C 1.37889 * 126.22237 * 179.69263 * 20 18 17 22 22 C 1.39883 * 107.08928 * 179.84885 * 21 20 18 23 23 Br 1.89100 * 126.07083 * 180.16066 * 22 21 20 24 24 C 1.35499 * 107.85362 * 0.41695 * 22 21 20 25 25 N 1.35608 * 108.85968 * 359.74081 * 24 22 21 26 26 H 0.96991 * 125.67758 * 180.02562 * 25 24 22 27 27 C 1.39025 * 119.95222 * 359.96361 * 13 12 11 28 28 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.98194 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79117 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.82121 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00172 * 359.97438 * 16 14 13 33 33 H 0.96997 * 120.00199 * 0.02562 * 17 16 14 34 34 H 1.07997 * 126.45217 * 359.97438 * 21 20 18 35 35 H 1.08005 * 125.57308 * 179.75986 * 24 22 21 36 36 H 1.07998 * 120.20834 * 180.29029 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0497 -1.2341 -0.2835 9 6 1.3509 -2.4077 0.3732 10 6 1.8219 -3.6493 -0.0945 11 6 1.1796 -4.8118 0.2698 12 6 0.0704 -4.7699 1.0959 13 6 -0.4121 -3.5456 1.5701 14 6 -1.5985 -3.5094 2.4522 15 8 -2.0171 -2.4453 2.8645 16 7 -2.2158 -4.6562 2.7989 17 7 -3.3395 -4.6220 3.6349 18 6 -3.9570 -5.7689 3.9811 19 8 -3.5383 -6.8342 3.5679 20 6 -5.1337 -5.7329 4.8560 21 6 -5.8643 -6.8212 5.2841 22 6 -6.8908 -6.3323 6.0990 23 35 -8.2077 -7.3698 6.9738 24 6 -6.7773 -4.9829 6.1456 25 7 -5.7131 -4.6063 5.3941 26 1 -5.4105 -3.6949 5.2586 27 6 0.2247 -2.3628 1.2119 28 1 -0.4850 0.8400 -0.0004 29 1 2.6873 -3.6901 -0.7392 30 1 1.5441 -5.7620 -0.0916 31 1 -0.4257 -5.6875 1.3758 32 1 -1.8821 -5.5054 2.4695 33 1 -3.6735 -3.7729 3.9640 34 1 -5.6778 -7.8561 5.0383 35 1 -7.4278 -4.3161 6.6922 36 1 -0.1414 -1.4157 1.5795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044956314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:59 Heat of formation + Delta-G solvation = 29.207925 kcal Electronic energy + Delta-G solvation = -24048.746148 eV Core-core repulsion = 20159.895208 eV Total energy + Delta-G solvation = -3888.850940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 377.016 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.82993 -40.02088 -38.72469 -37.17432 -35.24888 -33.87862 -32.80721 -31.74041 -30.53078 -29.97497 -29.57264 -28.61840 -25.44075 -23.90318 -22.59684 -21.21310 -20.99122 -20.60501 -20.38583 -18.98729 -17.71529 -17.69028 -16.37751 -15.79763 -15.75690 -15.21465 -14.81732 -14.73990 -14.63639 -14.23647 -14.02435 -13.95788 -13.36316 -13.20455 -13.12780 -12.89008 -12.64233 -11.80477 -11.47421 -11.37675 -11.21634 -11.14455 -10.86082 -10.68773 -10.61316 -10.48683 -10.24985 -9.82688 -9.43369 -9.31457 -9.30191 -8.80481 -8.31854 -7.76869 -7.64854 -6.91169 -4.52388 0.96054 1.36620 1.83104 1.92034 2.00790 2.62705 2.70901 2.95852 3.00912 3.02277 3.08515 3.61807 3.83470 4.00645 4.46651 4.49756 4.52752 4.73287 5.11873 5.40709 5.44249 5.46607 5.93004 5.97236 6.13407 6.15990 6.53427 6.66238 6.67035 6.77764 6.86630 6.89652 7.08626 7.23115 7.51225 7.59382 7.74269 7.81047 7.85228 8.04231 8.36883 8.60480 8.68934 8.71017 10.03708 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.001601 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.336174 B =17482.560513 C =18578.484441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.218 4.218 13 C -0.121 4.121 14 C 0.570 3.430 15 O -0.547 6.547 16 N -0.526 5.526 17 N -0.519 5.519 18 C 0.587 3.413 19 O -0.525 6.525 20 C -0.034 4.034 21 C -0.070 4.070 22 C -0.184 4.184 23 Br -0.025 7.025 24 C 0.070 3.930 25 N -0.530 5.530 26 H 0.426 0.574 27 C -0.087 4.087 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.434 0.566 33 H 0.423 0.577 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 -8.679 13.158 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.096 3.904 10 C -0.226 4.226 11 C -0.112 4.112 12 C -0.238 4.238 13 C -0.126 4.126 14 C 0.362 3.638 15 O -0.423 6.423 16 N -0.278 5.278 17 N -0.264 5.264 18 C 0.374 3.626 19 O -0.400 6.400 20 C -0.149 4.149 21 C -0.098 4.098 22 C -0.269 4.269 23 Br 0.059 6.941 24 C -0.070 4.070 25 N -0.127 5.127 26 H 0.265 0.735 27 C -0.107 4.107 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.278 0.722 33 H 0.264 0.736 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.439 -8.742 13.380 22.928 hybrid contribution 0.604 1.428 -0.283 1.576 sum -15.836 -7.313 13.097 21.813 Atomic orbital electron populations 1.69775 1.07609 1.29991 1.33399 1.25982 0.94805 1.01655 0.92213 0.86294 0.80108 0.79896 0.80084 1.18872 1.20210 1.18658 1.19576 0.98235 0.90951 1.39837 0.89908 1.17583 0.91069 0.92582 0.89177 1.21153 1.03421 0.92688 1.05349 1.20456 0.95766 0.96977 0.97996 1.20381 1.01556 0.94463 1.07446 1.19128 0.95706 0.95794 1.01956 1.19185 0.83247 0.81517 0.79876 1.90706 1.66342 1.29476 1.55823 1.45215 1.22590 1.12146 1.47861 1.44510 1.24393 1.10016 1.47467 1.16907 0.81862 0.83293 0.80554 1.90891 1.65074 1.28963 1.55081 1.20058 1.00222 0.86941 1.07658 1.21183 0.93032 0.98658 0.96900 1.21002 1.02114 0.93816 1.10011 1.96644 1.50499 1.69755 1.77218 1.21946 0.92008 0.94970 0.98116 1.42118 1.23634 1.09073 1.37881 0.73488 1.21595 0.96407 0.96082 0.96631 0.90314 0.88323 0.88499 0.88959 0.72185 0.73579 0.82185 0.79889 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.83 10.97 55.55 0.61 -19.22 16 2 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.50 9.05 -37.73 -0.34 -11.84 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.10 2.49 5.57 -106.87 -0.60 1.90 16 10 C -0.21 -4.69 9.78 -38.81 -0.38 -5.06 16 11 C -0.09 -1.92 10.01 -39.72 -0.40 -2.32 16 12 C -0.22 -4.44 9.55 -38.92 -0.37 -4.81 16 13 C -0.12 -2.72 5.87 -105.04 -0.62 -3.33 16 14 C 0.57 11.69 7.89 -12.31 -0.10 11.59 16 15 O -0.55 -12.29 16.17 5.32 0.09 -12.20 16 16 N -0.53 -8.87 6.21 30.54 0.19 -8.68 16 17 N -0.52 -7.23 6.26 30.26 0.19 -7.04 16 18 C 0.59 7.95 7.90 -12.85 -0.10 7.85 16 19 O -0.53 -8.67 16.72 5.19 0.09 -8.58 16 20 C -0.03 -0.36 7.05 -81.98 -0.58 -0.94 16 21 C -0.07 -0.73 10.63 -39.09 -0.42 -1.14 16 22 C -0.18 -1.61 6.53 -39.94 -0.26 -1.87 16 23 Br -0.02 -0.20 34.08 -68.01 -2.32 -2.52 16 24 C 0.07 0.47 11.86 -16.86 -0.20 0.27 16 25 N -0.53 -3.85 6.00 -9.36 -0.06 -3.90 16 26 H 0.43 2.06 8.19 -40.82 -0.33 1.73 16 27 C -0.09 -2.20 8.23 -38.44 -0.32 -2.51 16 28 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.60 6.38 -52.49 -0.33 1.26 16 32 H 0.43 7.02 6.02 -182.59 -1.10 5.92 16 33 H 0.42 5.10 7.13 -182.60 -1.30 3.80 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.14 3.66 5.77 -52.49 -0.30 3.36 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -30.26 344.30 -10.43 -40.69 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -4.61 Total: 13.85 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -4.76 Total: -10.56 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.93 Total: -38.85 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.32 Total: -2.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.26 -10.43 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044956314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.899 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds