Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47107 * 2 1 4 4 N 1.46503 * 109.47287 * 186.43985 * 3 2 1 5 5 C 1.36870 * 119.99717 * 282.21462 * 4 3 2 6 6 H 1.07996 * 119.99814 * 236.45132 * 5 4 3 7 7 C 1.39051 * 120.00175 * 56.44514 * 5 4 3 8 8 N 1.31358 * 119.99810 * 41.94671 * 7 5 4 9 9 Si 1.86794 * 119.99948 * 221.94777 * 7 5 4 10 10 H 1.48502 * 109.47485 * 60.00157 * 9 7 5 11 11 H 1.48502 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47266 * 300.00283 * 9 7 5 13 13 C 1.34773 * 120.00096 * 102.20976 * 4 3 2 14 14 O 1.21592 * 119.99916 * 186.99358 * 13 4 3 15 15 C 1.47729 * 120.00007 * 6.99413 * 13 4 3 16 16 C 1.39648 * 120.14753 * 128.48710 * 15 13 4 17 17 C 1.37936 * 119.84196 * 180.02562 * 16 15 13 18 18 C 1.38379 * 120.15210 * 0.02592 * 17 16 15 19 19 C 1.50700 * 119.84645 * 179.97438 * 18 17 16 20 20 S 1.80997 * 109.47503 * 89.99326 * 19 18 17 21 21 C 1.76202 * 100.00144 * 179.97438 * 20 19 18 22 22 N 1.29757 * 124.95381 * 180.02562 * 21 20 19 23 23 C 1.32093 * 116.85321 * 180.02562 * 22 21 20 24 24 C 1.50700 * 122.70303 * 179.97438 * 23 22 21 25 25 C 1.33333 * 114.59160 * 359.97438 * 23 22 21 26 26 S 1.70963 * 124.95219 * 0.02562 * 21 20 19 27 27 C 1.38373 * 120.30806 * 0.22496 * 18 17 16 28 28 C 1.37939 * 120.14734 * 359.49576 * 27 18 17 29 29 H 1.09002 * 109.47250 * 299.99753 * 1 2 3 30 30 H 1.08996 * 109.47620 * 59.99766 * 1 2 3 31 31 H 1.09006 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46589 * 240.00054 * 2 1 3 33 33 H 1.08998 * 109.46890 * 120.00164 * 2 1 3 34 34 H 1.09000 * 109.47567 * 66.43402 * 3 2 1 35 35 H 1.09000 * 109.47053 * 306.43624 * 3 2 1 36 36 H 0.97002 * 119.99928 * 179.97438 * 8 7 5 37 37 H 1.07992 * 120.08103 * 0.02562 * 16 15 13 38 38 H 1.07999 * 119.92477 * 179.97438 * 17 16 15 39 39 H 1.09002 * 109.46864 * 329.99425 * 19 18 17 40 40 H 1.09003 * 109.46974 * 209.99792 * 19 18 17 41 41 H 1.08995 * 109.47417 * 90.02410 * 24 23 22 42 42 H 1.09001 * 109.47105 * 210.02364 * 24 23 22 43 43 H 1.09005 * 109.47190 * 330.02165 * 24 23 22 44 44 H 1.07996 * 125.95037 * 180.02562 * 25 23 22 45 45 H 1.07996 * 119.92821 * 179.72563 * 27 18 17 46 46 H 1.08001 * 120.07343 * 180.22766 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4968 1.4454 -0.1549 5 6 4.2993 1.1528 0.9146 6 1 5.0533 1.8576 1.2326 7 6 4.1436 -0.0516 1.5917 8 7 3.9455 -1.1624 0.9191 9 14 4.2162 -0.0901 3.4578 10 1 3.1441 0.7746 4.0130 11 1 4.0237 -1.4841 3.9321 12 1 5.5392 0.4085 3.9122 13 6 4.0468 1.7361 -1.3505 14 8 5.2456 1.6153 -1.5137 15 6 3.1931 2.2015 -2.4627 16 6 3.5204 3.3678 -3.1575 17 6 2.7186 3.7968 -4.1946 18 6 1.5918 3.0748 -4.5466 19 6 0.7203 3.5502 -5.6804 20 16 1.3016 2.8249 -7.2334 21 6 0.1379 3.5281 -8.3541 22 7 0.1174 3.3169 -9.6342 23 6 -0.8283 3.9281 -10.3248 24 6 -0.9737 3.7768 -11.8171 25 6 -1.6438 4.6899 -9.5950 26 16 -1.1287 4.5884 -7.9134 27 6 1.2587 1.9211 -3.8590 28 6 2.0548 1.4775 -2.8236 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.7738 1.9220 0.9419 35 1 1.5857 1.9884 -0.8268 36 1 3.8373 -2.0027 1.3914 37 1 4.3993 3.9324 -2.8836 38 1 2.9703 4.6988 -4.7326 39 1 0.7702 4.6371 -5.7459 40 1 -0.3101 3.2441 -5.4996 41 1 -1.6328 2.9364 -12.0346 42 1 -1.3985 4.6894 -12.2351 43 1 0.0052 3.5952 -12.2610 44 1 -2.4754 5.2681 -9.9696 45 1 0.3755 1.3648 -4.1360 46 1 1.7957 0.5749 -2.2901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044979934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = 25.450746 kcal Electronic energy + Delta-G solvation = -28280.546469 eV Core-core repulsion = 24387.848969 eV Total energy + Delta-G solvation = -3892.697500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19891 -40.68089 -39.36177 -37.21597 -34.61791 -33.75665 -33.27758 -32.96650 -31.96842 -29.13559 -28.57729 -27.39351 -26.55571 -25.92777 -23.68359 -23.35066 -22.30244 -21.07380 -20.70964 -19.54656 -18.98226 -18.07456 -17.79164 -17.18347 -16.81488 -16.56526 -16.31322 -16.06837 -15.99837 -15.72031 -15.22715 -15.12480 -14.88993 -14.53398 -14.35710 -14.30075 -14.10545 -13.88822 -13.71060 -13.51054 -13.44271 -13.34562 -13.10903 -12.89130 -12.77714 -12.61273 -12.45697 -12.28470 -12.12352 -12.04814 -11.94934 -11.83660 -11.46935 -10.85569 -10.69695 -10.63123 -10.22834 -10.16536 -9.91359 -9.66570 -9.27860 -8.65772 -8.40896 -6.12477 -0.44254 -0.43263 0.03131 0.40627 0.43504 0.69510 1.31915 1.37976 1.42764 1.52329 1.67190 2.08882 2.30705 2.72355 2.84065 3.06677 3.43815 3.48697 3.68825 3.93671 4.01687 4.13408 4.23635 4.24319 4.34107 4.35151 4.39126 4.45104 4.56606 4.64560 4.74429 4.75931 4.80314 4.84440 4.85975 4.87000 5.05660 5.11714 5.28811 5.30957 5.31093 5.40275 5.42973 5.50682 5.55169 5.79507 5.90008 6.29368 6.59585 6.63074 7.20328 7.38793 8.10651 8.55922 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.023059 B = 0.001790 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.996665 B =15636.775480 C =16127.822275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.107 3.893 4 N -0.442 5.442 5 C -0.396 4.396 6 H 0.052 0.948 7 C 0.046 3.954 8 N -0.836 5.836 9 Si 0.955 3.045 10 H -0.255 1.255 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.485 3.515 14 O -0.624 6.624 15 C -0.114 4.114 16 C -0.095 4.095 17 C -0.091 4.091 18 C -0.069 4.069 19 C -0.074 4.074 20 S -0.011 6.011 21 C -0.004 4.004 22 N -0.493 5.493 23 C 0.054 3.946 24 C -0.077 4.077 25 C -0.258 4.258 26 S 0.171 5.829 27 C -0.092 4.092 28 C -0.103 4.103 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.274 0.726 37 H 0.118 0.882 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.210 0.790 45 H 0.160 0.840 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 12.064 -17.990 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.016 4.016 4 N -0.159 5.159 5 C -0.522 4.522 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.467 5.467 9 Si 0.777 3.223 10 H -0.180 1.180 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.276 3.724 14 O -0.511 6.511 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.222 4.222 20 S 0.225 5.775 21 C -0.389 4.389 22 N -0.214 5.214 23 C -0.079 4.079 24 C -0.137 4.137 25 C -0.401 4.401 26 S 0.421 5.579 27 C -0.111 4.111 28 C -0.121 4.121 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.176 0.824 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.227 0.773 45 H 0.178 0.822 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.994 11.096 -17.510 28.116 hybrid contribution -0.015 0.115 0.352 0.371 sum -19.009 11.211 -17.158 27.954 Atomic orbital electron populations 1.21736 0.93503 1.02041 1.02589 1.21931 0.96260 0.96469 1.02021 1.21967 0.80465 0.97447 1.01719 1.43563 1.05868 1.59969 1.06546 1.18775 1.22384 1.03091 1.07958 0.92988 1.26159 0.93606 0.93018 1.03709 1.70421 1.39173 0.98457 1.38631 0.85650 0.79491 0.77773 0.79351 1.17961 1.19990 1.20121 1.19558 0.87819 0.81416 0.83620 1.90568 1.18328 1.59160 1.83064 1.20294 0.96418 0.97721 0.97362 1.21213 0.99525 0.95027 0.95635 1.21176 0.93375 1.00746 0.95796 1.19218 0.95946 0.96030 0.95910 1.22794 1.02966 1.05307 0.91172 1.86572 1.35021 1.58883 0.97043 1.28667 1.05463 1.05794 0.98944 1.66495 1.25032 1.25579 1.04254 1.20849 0.91460 0.95813 0.99789 1.20469 1.03367 1.04346 0.85483 1.27133 1.08516 1.09608 0.94825 1.83766 1.23009 1.41750 1.09380 1.21221 1.00232 0.95645 0.94043 1.21588 0.92942 0.99784 0.97803 0.92123 0.91112 0.92384 0.94233 0.92568 0.91913 0.89465 0.91580 0.86384 0.82426 0.85677 0.85538 0.89739 0.88088 0.91426 0.77301 0.82245 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.13 -4.97 4.39 30.59 0.13 -4.84 16 3 C 0.11 4.34 4.80 86.38 0.41 4.75 16 4 N -0.44 -22.98 2.56 -638.95 -1.64 -24.62 16 5 C -0.40 -22.83 8.41 84.10 0.71 -22.12 16 6 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 7 C 0.05 2.46 3.93 84.96 0.33 2.80 16 8 N -0.84 -45.88 11.52 21.68 0.25 -45.63 16 9 Si 0.96 41.02 29.69 68.60 2.04 43.06 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.49 25.84 7.15 86.75 0.62 26.46 16 14 O -0.62 -39.65 17.03 -4.00 -0.07 -39.72 16 15 C -0.11 -4.57 4.94 -20.09 -0.10 -4.67 16 16 C -0.09 -3.19 9.75 22.54 0.22 -2.97 16 17 C -0.09 -2.19 9.68 22.23 0.22 -1.97 16 18 C -0.07 -1.44 5.14 -19.80 -0.10 -1.55 16 19 C -0.07 -1.10 4.75 71.24 0.34 -0.76 16 20 S -0.01 -0.23 22.29 -56.49 -1.26 -1.49 16 21 C 0.00 -0.08 7.59 130.55 0.99 0.91 16 22 N -0.49 -11.60 10.59 -188.54 -2.00 -13.60 16 23 C 0.05 0.94 6.74 41.41 0.28 1.22 16 24 C -0.08 -0.85 10.30 71.24 0.73 -0.12 16 25 C -0.26 -3.25 11.10 66.71 0.74 -2.51 16 26 S 0.17 2.29 21.54 -56.49 -1.22 1.07 16 27 C -0.09 -2.15 9.68 22.23 0.22 -1.94 16 28 C -0.10 -3.35 7.43 22.54 0.17 -3.19 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.04 1.69 6.52 -2.38 -0.02 1.67 16 33 H 0.06 2.51 5.41 -2.39 -0.01 2.50 16 34 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 35 H 0.09 3.05 4.96 -2.39 -0.01 3.04 16 36 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 38 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.12 1.37 7.91 -2.39 -0.02 1.35 16 40 H 0.13 1.36 7.91 -2.39 -0.02 1.34 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.56 8.12 -2.39 -0.02 0.54 16 43 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.21 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 46 H 0.13 4.46 4.79 -2.91 -0.01 4.45 16 Total: -1.00 -79.37 405.29 3.74 -75.64 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.01 Total: 18.88 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 6.62 Total: -13.59 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.38 Total: -83.85 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.07 Total: -39.72 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.04 Total: 43.06 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.48 Total: -0.42 kcal Total: -79.37 3.74 -75.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044979934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.087 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds