Wall clock time and date at job start Tue Mar 31 2020 07:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48503 * 109.46959 * 240.00323 * 3 2 1 5 5 H 1.48496 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46957 * 120.00418 * 3 2 1 7 7 C 1.40273 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99598 * 188.70559 * 7 2 1 9 9 C 1.40884 * 120.00496 * 8.70403 * 7 2 1 10 10 C 1.40707 * 120.32570 * 33.39290 * 9 7 2 11 11 C 1.37598 * 119.87888 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57554 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.66982 * 0.02562 * 12 11 10 14 14 C 1.39223 * 120.09328 * 359.97438 * 13 12 11 15 15 C 1.47442 * 120.27848 * 179.97438 * 14 13 12 16 16 O 1.21615 * 119.99566 * 185.54235 * 15 14 13 17 17 N 1.34769 * 120.00032 * 5.54267 * 15 14 13 18 18 N 1.40101 * 120.00061 * 179.97438 * 17 15 14 19 19 C 1.34774 * 120.00423 * 180.02562 * 18 17 15 20 20 O 1.21697 * 120.00028 * 0.02562 * 19 18 17 21 21 C 1.46671 * 120.00122 * 180.02562 * 19 18 17 22 22 C 1.37882 * 126.22479 * 179.69224 * 21 19 18 23 23 C 1.39877 * 107.09529 * 179.84620 * 22 21 19 24 24 Br 1.89097 * 126.07708 * 180.15836 * 23 22 21 25 25 C 1.35511 * 107.85153 * 0.41380 * 23 22 21 26 26 N 1.35605 * 108.85404 * 359.74272 * 25 23 22 27 27 H 0.97001 * 125.67408 * 179.97438 * 26 25 23 28 28 H 0.96997 * 120.00157 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.06213 * 0.02562 * 10 9 7 30 30 H 1.08008 * 119.71315 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.66542 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.95256 * 179.72023 * 13 12 11 33 33 H 0.96998 * 120.00193 * 0.02562 * 17 15 14 34 34 H 0.97007 * 119.99448 * 0.02562 * 18 17 15 35 35 H 1.08001 * 126.45716 * 359.97438 * 22 21 19 36 36 H 1.07994 * 125.57356 * 179.76129 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2126 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0784 -1.2203 0.1410 9 6 1.3154 -2.4278 -0.1857 10 6 0.1808 -2.4787 -1.0163 11 6 -0.4887 -3.6682 -1.1902 12 6 -0.0545 -4.8226 -0.5530 13 6 1.0572 -4.7991 0.2681 14 6 1.7556 -3.6107 0.4638 15 6 2.9416 -3.5809 1.3391 16 8 3.4879 -2.5230 1.5870 17 7 3.4204 -4.7259 1.8645 18 7 4.5477 -4.6976 2.6958 19 6 5.0268 -5.8427 3.2208 20 8 4.4805 -6.9014 2.9724 21 6 6.2067 -5.8130 4.0916 22 6 6.7986 -6.9000 4.6992 23 6 7.8900 -6.4189 5.4299 24 35 9.0810 -7.4587 6.4673 25 6 7.9388 -5.0745 5.2670 26 7 6.9210 -4.6942 4.4557 27 1 6.7281 -3.7848 4.1784 28 1 -0.4850 0.8400 0.0004 29 1 -0.1641 -1.5858 -1.5165 30 1 -1.3590 -3.7043 -1.8288 31 1 -0.5907 -5.7484 -0.7002 32 1 1.3822 -5.7031 0.7617 33 1 2.9849 -5.5697 1.6664 34 1 4.9834 -3.8538 2.8936 35 1 6.4808 -7.9294 4.6234 36 1 8.6691 -4.4140 5.7104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044980477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:56 Heat of formation + Delta-G solvation = 33.504601 kcal Electronic energy + Delta-G solvation = -24448.523985 eV Core-core repulsion = 20559.859363 eV Total energy + Delta-G solvation = -3888.664622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 377.016 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73111 -39.76863 -38.54638 -36.93840 -34.98003 -33.85367 -32.70582 -31.54524 -30.42838 -30.02359 -29.51673 -28.40621 -25.57353 -23.61891 -22.38087 -21.11626 -20.93418 -20.50914 -20.26867 -18.80132 -17.79630 -17.12851 -16.54976 -15.65087 -15.60429 -15.34221 -14.64466 -14.51741 -14.33412 -14.19618 -13.94370 -13.71049 -13.26586 -13.12123 -13.04945 -12.83743 -12.43340 -11.78846 -11.40315 -11.29861 -11.22828 -10.85757 -10.85426 -10.69744 -10.55726 -10.37980 -10.27011 -9.82541 -9.39997 -9.22308 -8.77491 -8.70619 -8.06340 -7.69939 -7.51102 -6.93822 -4.54611 1.06902 1.43737 2.03330 2.06703 2.17010 2.71240 2.72083 2.99775 3.04196 3.08742 3.14337 3.84552 3.91979 4.19564 4.53413 4.55241 4.71787 4.82033 5.22684 5.47576 5.52210 5.80253 5.90057 6.03532 6.19256 6.22681 6.42652 6.77258 6.81954 6.91710 6.97787 7.00710 7.08123 7.32475 7.48802 7.73575 7.83377 8.00177 8.04363 8.08434 8.49600 8.65943 8.73036 9.08040 10.00346 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.001902 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.681174 B =14719.576837 C =16337.000508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.414 4.414 8 H 0.106 0.894 9 C 0.148 3.852 10 C -0.145 4.145 11 C -0.093 4.093 12 C -0.240 4.240 13 C -0.055 4.055 14 C -0.259 4.259 15 C 0.569 3.431 16 O -0.540 6.540 17 N -0.539 5.539 18 N -0.515 5.515 19 C 0.584 3.416 20 O -0.531 6.531 21 C -0.031 4.031 22 C -0.073 4.073 23 C -0.183 4.183 24 Br -0.027 7.027 25 C 0.067 3.933 26 N -0.530 5.530 27 H 0.426 0.574 28 H 0.285 0.715 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.426 0.574 34 H 0.422 0.578 35 H 0.160 0.840 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.070 -7.988 10.450 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.151 4.151 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.123 0.877 9 C 0.144 3.856 10 C -0.164 4.164 11 C -0.112 4.112 12 C -0.259 4.259 13 C -0.074 4.074 14 C -0.266 4.266 15 C 0.365 3.635 16 O -0.418 6.418 17 N -0.292 5.292 18 N -0.259 5.259 19 C 0.370 3.630 20 O -0.406 6.406 21 C -0.146 4.146 22 C -0.101 4.101 23 C -0.269 4.269 24 Br 0.057 6.943 25 C -0.073 4.073 26 N -0.127 5.127 27 H 0.265 0.735 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.263 0.737 35 H 0.177 0.823 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 15.190 -8.024 10.736 20.258 hybrid contribution -0.111 1.377 -0.177 1.392 sum 15.079 -6.648 10.558 19.572 Atomic orbital electron populations 1.69697 1.07793 1.29965 1.33701 1.26160 0.94849 1.01918 0.92129 0.86168 0.79973 0.79226 0.80273 1.18672 1.20329 1.18663 1.20178 0.97279 0.89459 1.37284 0.87665 1.17419 0.90200 0.90995 0.87006 1.21388 0.98053 0.96535 1.00432 1.20853 0.98186 0.93473 0.98654 1.20320 1.01159 0.97538 1.06921 1.20693 0.95087 0.95024 0.96637 1.19060 1.01267 0.96665 1.09619 1.18766 0.84297 0.81184 0.79299 1.90679 1.60396 1.29129 1.61571 1.45417 1.23134 1.12591 1.48085 1.44456 1.24741 1.10231 1.46446 1.16883 0.82748 0.83365 0.80016 1.90873 1.59219 1.29478 1.61052 1.20130 0.98983 0.87150 1.08330 1.21161 0.93845 0.98648 0.96448 1.20987 1.02320 0.93983 1.09630 1.96630 1.59292 1.69672 1.68708 1.21924 0.93548 0.94947 0.96863 1.42132 1.23259 1.09507 1.37770 0.73459 0.90411 0.86103 0.88801 0.88733 0.88988 0.73060 0.73706 0.82272 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 11.06 55.56 0.61 -18.76 16 2 C 0.07 1.67 5.27 -17.30 -0.09 1.58 16 3 Si 0.92 18.48 29.57 -169.99 -5.03 13.45 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.41 -10.71 7.71 -37.82 -0.29 -11.00 16 8 H 0.11 2.78 5.87 -52.48 -0.31 2.47 16 9 C 0.15 3.78 5.52 -106.55 -0.59 3.19 16 10 C -0.14 -3.50 8.62 -38.88 -0.34 -3.84 16 11 C -0.09 -2.00 10.01 -39.60 -0.40 -2.40 16 12 C -0.24 -4.92 10.03 -39.37 -0.39 -5.32 16 13 C -0.06 -1.15 9.52 -39.22 -0.37 -1.52 16 14 C -0.26 -6.04 5.92 -104.37 -0.62 -6.66 16 15 C 0.57 12.39 7.84 -12.52 -0.10 12.29 16 16 O -0.54 -12.83 13.41 5.26 0.07 -12.76 16 17 N -0.54 -9.73 6.21 30.44 0.19 -9.54 16 18 N -0.51 -7.78 6.26 30.26 0.19 -7.59 16 19 C 0.58 8.50 7.90 -12.86 -0.10 8.39 16 20 O -0.53 -9.26 16.72 5.19 0.09 -9.18 16 21 C -0.03 -0.36 7.05 -81.98 -0.58 -0.94 16 22 C -0.07 -0.82 10.63 -39.10 -0.42 -1.24 16 23 C -0.18 -1.74 6.53 -39.94 -0.26 -2.00 16 24 Br -0.03 -0.23 34.08 -68.01 -2.32 -2.55 16 25 C 0.07 0.51 11.86 -16.86 -0.20 0.31 16 26 N -0.53 -4.32 6.00 -9.36 -0.06 -4.37 16 27 H 0.43 2.49 8.19 -40.82 -0.33 2.15 16 28 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 29 H 0.12 2.98 6.51 -52.49 -0.34 2.64 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.63 6.44 -52.48 -0.34 1.29 16 33 H 0.43 7.36 6.06 -182.60 -1.11 6.25 16 34 H 0.42 5.63 7.13 -182.59 -1.30 4.33 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -30.15 339.76 -10.43 -40.58 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -4.56 Total: 14.76 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -4.74 Total: -9.15 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.94 Total: -40.27 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.32 Total: -2.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.15 -10.43 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044980477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.083 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds