Wall clock time and date at job start Tue Mar 31 2020 07:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48503 * 109.46959 * 240.00323 * 3 2 1 5 5 H 1.48496 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46957 * 120.00418 * 3 2 1 7 7 C 1.40273 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99598 * 188.70559 * 7 2 1 9 9 C 1.40884 * 120.00496 * 8.70403 * 7 2 1 10 10 C 1.40707 * 120.32570 * 33.39290 * 9 7 2 11 11 C 1.37598 * 119.87888 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57554 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.66982 * 0.02562 * 12 11 10 14 14 C 1.39223 * 120.09328 * 359.97438 * 13 12 11 15 15 C 1.47442 * 120.27848 * 179.97438 * 14 13 12 16 16 O 1.21615 * 119.99566 * 185.54235 * 15 14 13 17 17 N 1.34769 * 120.00032 * 5.54267 * 15 14 13 18 18 N 1.40101 * 120.00061 * 179.97438 * 17 15 14 19 19 C 1.34774 * 120.00423 * 180.02562 * 18 17 15 20 20 O 1.21697 * 120.00028 * 0.02562 * 19 18 17 21 21 C 1.46671 * 120.00122 * 180.02562 * 19 18 17 22 22 C 1.37882 * 126.22479 * 179.69224 * 21 19 18 23 23 C 1.39877 * 107.09529 * 179.84620 * 22 21 19 24 24 Br 1.89097 * 126.07708 * 180.15836 * 23 22 21 25 25 C 1.35511 * 107.85153 * 0.41380 * 23 22 21 26 26 N 1.35605 * 108.85404 * 359.74272 * 25 23 22 27 27 H 0.97001 * 125.67408 * 179.97438 * 26 25 23 28 28 H 0.96997 * 120.00157 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.06213 * 0.02562 * 10 9 7 30 30 H 1.08008 * 119.71315 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.66542 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.95256 * 179.72023 * 13 12 11 33 33 H 0.96998 * 120.00193 * 0.02562 * 17 15 14 34 34 H 0.97007 * 119.99448 * 0.02562 * 18 17 15 35 35 H 1.08001 * 126.45716 * 359.97438 * 22 21 19 36 36 H 1.07994 * 125.57356 * 179.76129 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2126 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0784 -1.2203 0.1410 9 6 1.3154 -2.4278 -0.1857 10 6 0.1808 -2.4787 -1.0163 11 6 -0.4887 -3.6682 -1.1902 12 6 -0.0545 -4.8226 -0.5530 13 6 1.0572 -4.7991 0.2681 14 6 1.7556 -3.6107 0.4638 15 6 2.9416 -3.5809 1.3391 16 8 3.4879 -2.5230 1.5870 17 7 3.4204 -4.7259 1.8645 18 7 4.5477 -4.6976 2.6958 19 6 5.0268 -5.8427 3.2208 20 8 4.4805 -6.9014 2.9724 21 6 6.2067 -5.8130 4.0916 22 6 6.7986 -6.9000 4.6992 23 6 7.8900 -6.4189 5.4299 24 35 9.0810 -7.4587 6.4673 25 6 7.9388 -5.0745 5.2670 26 7 6.9210 -4.6942 4.4557 27 1 6.7281 -3.7848 4.1784 28 1 -0.4850 0.8400 0.0004 29 1 -0.1641 -1.5858 -1.5165 30 1 -1.3590 -3.7043 -1.8288 31 1 -0.5907 -5.7484 -0.7002 32 1 1.3822 -5.7031 0.7617 33 1 2.9849 -5.5697 1.6664 34 1 4.9834 -3.8538 2.8936 35 1 6.4808 -7.9294 4.6234 36 1 8.6691 -4.4140 5.7104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044980477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:55 Heat of formation + Delta-G solvation = 14.234525 kcal Electronic energy + Delta-G solvation = -24449.359598 eV Core-core repulsion = 20559.859363 eV Total energy + Delta-G solvation = -3889.500235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 377.016 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55919 -41.19550 -40.00001 -38.61554 -36.45884 -35.59699 -33.60871 -32.86737 -31.78163 -31.30739 -30.89089 -29.41219 -27.33772 -24.86685 -23.85374 -22.79421 -22.22622 -21.43512 -21.24125 -20.03932 -19.42975 -18.65135 -17.93238 -17.15720 -16.79982 -16.76346 -15.98117 -15.93590 -15.75039 -15.48758 -15.05401 -14.94289 -14.86320 -14.51581 -14.15615 -13.87465 -13.79806 -13.52235 -12.97147 -12.85696 -12.57666 -12.40305 -12.34489 -12.08226 -11.97769 -11.73670 -11.53302 -11.16588 -11.14659 -10.52347 -10.01922 -9.69866 -9.47358 -9.31659 -9.20642 -8.70342 -6.40777 0.14588 0.43261 0.63607 0.85461 0.99658 1.30170 1.35641 1.46867 1.51865 1.97773 1.98914 2.19349 2.24259 2.75101 2.99044 3.59005 3.67260 3.96575 4.11179 4.18150 4.30507 4.43563 4.56572 4.76391 4.80954 5.05416 5.20523 5.22972 5.28703 5.37484 5.52385 5.56845 5.71011 5.79968 6.02917 6.07701 6.21728 6.28620 6.50581 6.65320 6.77052 6.84366 6.92333 7.44871 8.25883 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.001902 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.681174 B =14719.576837 C =16337.000508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.268 1.268 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.119 3.881 10 C -0.173 4.173 11 C -0.089 4.089 12 C -0.235 4.235 13 C -0.056 4.056 14 C -0.277 4.277 15 C 0.569 3.431 16 O -0.565 6.565 17 N -0.530 5.530 18 N -0.512 5.512 19 C 0.590 3.410 20 O -0.563 6.563 21 C -0.055 4.055 22 C -0.076 4.076 23 C -0.204 4.204 24 Br -0.020 7.020 25 C 0.099 3.901 26 N -0.519 5.519 27 H 0.438 0.562 28 H 0.291 0.709 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.431 0.569 34 H 0.430 0.570 35 H 0.153 0.847 36 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.194 -8.500 11.413 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.115 3.885 10 C -0.192 4.192 11 C -0.107 4.107 12 C -0.254 4.254 13 C -0.075 4.075 14 C -0.283 4.283 15 C 0.364 3.636 16 O -0.445 6.445 17 N -0.282 5.282 18 N -0.258 5.258 19 C 0.379 3.621 20 O -0.441 6.441 21 C -0.170 4.170 22 C -0.104 4.104 23 C -0.290 4.290 24 Br 0.064 6.936 25 C -0.043 4.043 26 N -0.116 5.116 27 H 0.280 0.720 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.275 0.725 34 H 0.272 0.728 35 H 0.171 0.829 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 16.306 -8.556 11.693 21.813 hybrid contribution -0.392 1.286 -0.386 1.398 sum 15.913 -7.271 11.307 20.831 Atomic orbital electron populations 1.69731 1.08757 1.30973 1.34785 1.26864 0.95625 1.04526 0.91450 0.85247 0.78831 0.75720 0.79893 1.18174 1.18696 1.19303 1.20184 0.96747 0.90859 1.40152 0.89305 1.17795 0.91118 0.91900 0.87685 1.21351 0.99035 0.97297 1.01554 1.21212 0.98385 0.92833 0.98287 1.20786 1.00722 0.98487 1.05402 1.21051 0.94736 0.95272 0.96401 1.19396 1.02166 0.97089 1.09668 1.18566 0.84096 0.81619 0.79337 1.90656 1.61097 1.30283 1.62440 1.45013 1.23807 1.11601 1.47733 1.44569 1.23876 1.11121 1.46237 1.17273 0.82971 0.82422 0.79459 1.90847 1.60469 1.30486 1.62307 1.19613 0.99127 0.88611 1.09640 1.21266 0.94300 0.98466 0.96344 1.21119 1.02453 0.95000 1.10390 1.96640 1.58743 1.69813 1.68392 1.22582 0.92568 0.94759 0.94347 1.42124 1.22781 1.09372 1.37316 0.72049 0.89796 0.87601 0.86001 0.85082 0.85793 0.72494 0.72764 0.82916 0.76003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.51 11.06 21.88 0.24 -41.27 16 2 C 0.03 1.57 5.27 85.37 0.45 2.02 16 3 Si 0.98 38.77 29.57 68.60 2.03 40.80 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.45 -24.36 7.71 23.41 0.18 -24.18 16 8 H 0.09 4.94 5.87 -2.91 -0.02 4.93 16 9 C 0.12 6.26 5.52 -21.11 -0.12 6.15 16 10 C -0.17 -8.56 8.62 22.72 0.20 -8.36 16 11 C -0.09 -3.72 10.01 22.26 0.22 -3.50 16 12 C -0.23 -9.07 10.03 22.41 0.22 -8.85 16 13 C -0.06 -2.24 9.52 22.50 0.21 -2.02 16 14 C -0.28 -13.02 5.92 -19.70 -0.12 -13.13 16 15 C 0.57 25.11 7.84 86.67 0.68 25.79 16 16 O -0.57 -27.55 13.41 -4.08 -0.05 -27.60 16 17 N -0.53 -18.98 6.21 -175.87 -1.09 -20.07 16 18 N -0.51 -15.24 6.26 -176.39 -1.10 -16.34 16 19 C 0.59 16.86 7.90 86.45 0.68 17.54 16 20 O -0.56 -19.55 16.72 -4.34 -0.07 -19.63 16 21 C -0.06 -1.21 7.05 40.35 0.28 -0.92 16 22 C -0.08 -1.60 10.63 22.58 0.24 -1.36 16 23 C -0.20 -3.43 6.53 22.04 0.14 -3.28 16 24 Br -0.02 -0.30 34.08 -20.37 -0.69 -0.99 16 25 C 0.10 1.16 11.86 83.48 0.99 2.15 16 26 N -0.52 -7.23 6.00 -183.54 -1.10 -8.33 16 27 H 0.44 4.08 8.19 -92.71 -0.76 3.32 16 28 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 29 H 0.11 5.45 6.51 -2.91 -0.02 5.43 16 30 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.12 4.08 6.44 -2.91 -0.02 4.06 16 33 H 0.43 14.53 6.06 -213.32 -1.29 13.23 16 34 H 0.43 11.26 7.13 -213.31 -1.52 9.74 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.22 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -67.72 339.76 0.06 -67.66 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -2.37 Total: 37.75 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.28 Total: -11.97 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -3.05 Total: -86.02 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.13 Total: -47.23 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.69 Total: -0.99 kcal Total: -67.72 0.06 -67.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044980477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.895 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds