Wall clock time and date at job start Tue Mar 31 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48499 * 109.46909 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99820 * 3 2 1 6 6 H 1.48496 * 109.47051 * 149.99779 * 3 2 1 7 7 C 1.37877 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99507 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99983 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46680 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.35897 * 116.99968 * 179.97438 * 11 10 9 13 13 C 1.38804 * 120.02072 * 0.02562 * 12 11 10 14 14 C 1.38173 * 120.08432 * 180.02562 * 13 12 11 15 15 C 1.38164 * 120.12067 * 0.02562 * 14 13 12 16 16 C 1.38880 * 120.04398 * 0.02562 * 15 14 13 17 17 N 1.39942 * 120.04500 * 179.72174 * 16 15 14 18 18 C 1.34770 * 120.00559 * 144.92339 * 17 16 15 19 19 O 1.21590 * 119.99809 * 4.74898 * 18 17 16 20 20 N 1.34771 * 120.00471 * 184.75512 * 18 17 16 21 21 C 1.46929 * 120.60576 * 4.91175 * 20 18 17 22 22 C 1.52774 * 109.00893 * 233.74918 * 21 20 18 23 23 C 1.52991 * 109.35842 * 305.81381 * 22 21 20 24 24 C 1.52997 * 109.89763 * 60.90054 * 23 22 21 25 25 C 1.46918 * 120.61075 * 185.18827 * 20 18 17 26 26 O 1.43310 * 109.64798 * 181.46838 * 23 22 21 27 27 C 1.44206 * 107.26666 * 120.35359 * 26 23 22 28 28 C 1.54920 * 103.08077 * 21.39606 * 27 26 23 29 29 O 1.43704 * 109.40749 * 300.77825 * 23 22 21 30 30 C 1.38584 * 120.01997 * 180.02562 * 12 11 10 31 31 H 0.97001 * 120.00273 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.47570 * 59.99708 * 9 7 2 33 33 H 1.09000 * 109.47340 * 299.99461 * 9 7 2 34 34 H 1.08999 * 109.47354 * 60.00326 * 10 9 7 35 35 H 1.08993 * 109.46995 * 299.99460 * 10 9 7 36 36 H 1.08006 * 119.95758 * 0.02562 * 13 12 11 37 37 H 1.07998 * 119.93818 * 179.97438 * 14 13 12 38 38 H 1.08007 * 119.97720 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99793 * 324.91640 * 17 16 15 40 40 H 1.09004 * 109.58217 * 353.58052 * 21 20 18 41 41 H 1.08992 * 109.58847 * 114.00370 * 21 20 18 42 42 H 1.09002 * 109.56885 * 185.78357 * 22 21 20 43 43 H 1.08998 * 109.40240 * 65.73449 * 22 21 20 44 44 H 1.09001 * 109.50157 * 179.01304 * 24 23 22 45 45 H 1.09001 * 109.52883 * 58.92286 * 24 23 22 46 46 H 1.09002 * 109.58542 * 245.98209 * 25 20 18 47 47 H 1.08997 * 109.58389 * 6.26193 * 25 20 18 48 48 H 1.09002 * 110.69157 * 263.00169 * 27 26 23 49 49 H 1.08992 * 110.84641 * 139.87182 * 27 26 23 50 50 H 1.09002 * 110.97890 * 206.36399 * 28 27 26 51 51 H 1.09001 * 111.00947 * 82.59898 * 28 27 26 52 52 H 1.08001 * 120.06048 * 359.97438 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6364 0.0023 11 8 5.4506 -2.6364 0.0022 12 6 6.0676 -3.8472 0.0037 13 6 5.3121 -5.0116 0.0047 14 6 5.9380 -6.2434 0.0068 15 6 7.3175 -6.3201 0.0084 16 6 8.0785 -5.1584 0.0086 17 7 9.4758 -5.2361 0.0161 18 6 10.2052 -4.3220 -0.6538 19 8 9.6547 -3.3812 -1.1926 20 7 11.5448 -4.4508 -0.7267 21 6 12.2135 -5.6366 -0.1740 22 6 13.3041 -5.1860 0.7963 23 6 14.2392 -4.2041 0.0876 24 6 13.4532 -2.9732 -0.3682 25 6 12.3637 -3.4052 -1.3548 26 8 15.2848 -3.8036 0.9821 27 6 16.5362 -4.1870 0.3766 28 6 16.1740 -4.3187 -1.1238 29 8 14.8269 -4.8454 -1.0562 30 6 7.4515 -3.9202 0.0043 31 1 -0.4850 0.8400 -0.0004 32 1 3.8745 -0.6798 0.8910 33 1 3.8752 -0.6803 -0.8889 34 1 3.6586 -3.1509 -0.8875 35 1 3.6580 -3.1496 0.8925 36 1 4.2335 -4.9547 0.0038 37 1 5.3479 -7.1479 0.0079 38 1 7.8044 -7.2842 0.0105 39 1 9.9193 -5.9478 0.5037 40 1 11.4866 -6.2523 0.3558 41 1 12.6630 -6.2128 -0.9827 42 1 13.8735 -6.0521 1.1333 43 1 12.8450 -4.6959 1.6548 44 1 14.1285 -2.2705 -0.8564 45 1 12.9925 -2.4945 0.4959 46 1 12.8258 -3.7979 -2.2606 47 1 11.7355 -2.5507 -1.6061 48 1 16.8804 -5.1415 0.7750 49 1 17.2912 -3.4149 0.5244 50 1 16.8418 -5.0183 -1.6266 51 1 16.1885 -3.3463 -1.6162 52 1 8.0410 -3.0152 0.0032 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047736295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:48 Heat of formation + Delta-G solvation = -135.090573 kcal Electronic energy + Delta-G solvation = -34140.545934 eV Core-core repulsion = 29491.214193 eV Total energy + Delta-G solvation = -4649.331741 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.28296 -41.56378 -40.72284 -38.80488 -37.68141 -36.01737 -35.85391 -35.34540 -33.27863 -32.93652 -32.40092 -31.05166 -30.21280 -29.55214 -27.11982 -25.89359 -24.79183 -24.20175 -23.81574 -23.37431 -22.53396 -21.70470 -20.65682 -20.02212 -19.30399 -18.64201 -18.17626 -17.59523 -17.36269 -17.09094 -16.95692 -16.80015 -16.67066 -16.57543 -16.31849 -15.81327 -15.70602 -15.16368 -15.11873 -14.80355 -14.66492 -14.51130 -14.46854 -14.42334 -14.27294 -13.92648 -13.58283 -13.42323 -13.31616 -13.24412 -12.89003 -12.75146 -12.67135 -12.58752 -12.43268 -12.34304 -12.14868 -11.96731 -11.82645 -11.72369 -11.48346 -11.30677 -11.13840 -11.07714 -10.83268 -10.55652 -9.92738 -9.37562 -8.99563 -8.36704 -6.42863 0.28289 0.50412 1.33598 1.34463 1.34910 1.47869 1.90743 2.28631 2.31247 2.40306 2.71743 2.84490 2.89453 2.98073 3.52165 3.57901 3.71943 3.88485 3.93018 4.06341 4.08306 4.16419 4.19449 4.20260 4.21900 4.22059 4.27373 4.33203 4.39713 4.46971 4.55282 4.63896 4.64307 4.65351 4.69041 4.72083 4.77416 4.83003 4.93176 5.00904 5.09020 5.09777 5.22135 5.27531 5.32652 5.36350 5.46029 5.47726 5.55060 5.75979 5.93192 6.08283 6.14937 6.53744 6.62077 6.71557 7.22258 7.33719 8.78800 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.001630 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.909608 B =17178.948284 C =18653.457274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.536 4.536 8 H 0.046 0.954 9 C -0.008 4.008 10 C 0.087 3.913 11 O -0.341 6.341 12 C 0.124 3.876 13 C -0.235 4.235 14 C -0.053 4.053 15 C -0.172 4.172 16 C 0.193 3.807 17 N -0.668 5.668 18 C 0.700 3.300 19 O -0.612 6.612 20 N -0.620 5.620 21 C 0.116 3.884 22 C -0.134 4.134 23 C 0.259 3.741 24 C -0.148 4.148 25 C 0.138 3.862 26 O -0.398 6.398 27 C 0.015 3.985 28 C 0.011 3.989 29 O -0.377 6.377 30 C -0.182 4.182 31 H 0.271 0.729 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.425 0.575 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.115 0.885 50 H 0.132 0.868 51 H 0.081 0.919 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.189 -18.988 0.794 44.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.574 4.574 8 H 0.065 0.935 9 C -0.045 4.045 10 C 0.013 3.987 11 O -0.255 6.255 12 C 0.078 3.922 13 C -0.255 4.255 14 C -0.071 4.071 15 C -0.193 4.193 16 C 0.098 3.902 17 N -0.319 5.319 18 C 0.402 3.598 19 O -0.491 6.491 20 N -0.356 5.356 21 C -0.006 4.006 22 C -0.172 4.172 23 C 0.182 3.818 24 C -0.187 4.187 25 C 0.015 3.985 26 O -0.319 6.319 27 C -0.061 4.061 28 C -0.065 4.065 29 O -0.298 6.298 30 C -0.204 4.204 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.267 0.733 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.133 0.867 50 H 0.150 0.850 51 H 0.099 0.901 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 39.678 -18.070 0.447 43.602 hybrid contribution -0.105 0.988 0.120 1.001 sum 39.573 -17.082 0.567 43.106 Atomic orbital electron populations 1.70007 1.07895 1.28475 1.51497 1.25804 0.95602 1.03030 0.93668 0.85743 0.79372 0.78748 0.79370 1.19100 1.20035 1.17946 1.21093 0.90256 0.94072 1.51944 0.93543 1.19456 0.94636 0.92869 0.97552 1.22701 0.75635 0.99477 1.00938 1.86045 1.23054 1.28127 1.88285 1.19202 0.92278 0.84980 0.95724 1.21525 1.00735 0.92762 1.10452 1.21110 0.94304 0.97030 0.94703 1.21088 0.93556 0.97302 1.07340 1.17198 0.82064 0.92730 0.98220 1.42485 1.03698 1.32337 1.53403 1.16044 0.82146 0.82293 0.79318 1.90974 1.70807 1.34586 1.52759 1.47341 1.03122 1.23296 1.61872 1.21737 0.95019 0.86250 0.97640 1.22165 0.96409 1.00255 0.98397 1.23185 0.87842 0.90764 0.79990 1.22469 0.97862 0.97892 1.00459 1.21374 0.91128 0.90724 0.95266 1.88905 1.15937 1.82121 1.44961 1.24429 0.86605 1.03027 0.92041 1.24614 0.83125 1.01822 0.96955 1.89248 1.27330 1.66166 1.47062 1.20385 0.91447 0.98863 1.09670 0.92038 0.95631 0.95989 0.92258 0.91864 0.85267 0.81793 0.81443 0.73278 0.87701 0.89014 0.87553 0.89923 0.88933 0.90934 0.89796 0.90480 0.89492 0.86683 0.85038 0.90087 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 2 C 0.02 1.04 5.47 84.66 0.46 1.51 16 3 Si 0.94 46.12 27.47 68.60 1.88 48.00 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 7 C -0.54 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 9 C -0.01 -0.39 4.41 29.85 0.13 -0.26 16 10 C 0.09 3.88 4.68 71.98 0.34 4.21 16 11 O -0.34 -15.09 10.13 -92.39 -0.94 -16.03 16 12 C 0.12 4.70 6.68 22.49 0.15 4.85 16 13 C -0.24 -7.31 9.04 22.39 0.20 -7.11 16 14 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 15 C -0.17 -3.42 9.96 22.41 0.22 -3.19 16 16 C 0.19 5.03 6.30 38.13 0.24 5.27 16 17 N -0.67 -13.24 5.24 -317.24 -1.66 -14.90 16 18 C 0.70 17.56 8.14 179.06 1.46 19.02 16 19 O -0.61 -22.01 13.21 -4.00 -0.05 -22.06 16 20 N -0.62 -10.86 2.98 -837.73 -2.49 -13.35 16 21 C 0.12 1.08 6.17 86.22 0.53 1.61 16 22 C -0.13 -1.27 5.49 30.52 0.17 -1.10 16 23 C 0.26 3.14 1.03 30.59 0.03 3.17 16 24 C -0.15 -2.13 5.45 30.66 0.17 -1.96 16 25 C 0.14 2.41 6.19 86.37 0.53 2.95 16 26 O -0.40 -5.25 10.87 -126.22 -1.37 -6.62 16 27 C 0.01 0.09 8.08 72.64 0.59 0.67 16 28 C 0.01 0.06 7.91 72.64 0.57 0.63 16 29 O -0.38 -4.08 9.75 -126.22 -1.23 -5.31 16 30 C -0.18 -6.48 8.64 22.48 0.19 -6.28 16 31 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 33 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 34 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 35 H 0.06 2.68 7.66 -2.39 -0.02 2.66 16 36 H 0.13 4.01 6.29 -2.91 -0.02 3.99 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.42 4.51 6.30 -92.71 -0.58 3.93 16 40 H 0.11 0.45 5.57 -2.39 -0.01 0.43 16 41 H 0.09 0.77 7.82 -2.39 -0.02 0.75 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.31 7.82 -2.39 -0.02 1.29 16 47 H 0.08 1.75 7.03 -2.39 -0.02 1.73 16 48 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 52 H 0.12 4.78 6.22 -2.91 -0.02 4.76 16 Total: -1.00 -82.78 412.36 1.21 -81.56 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.31 Total: 15.99 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 6.46 Total: -8.53 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.85 Total: -87.00 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -3.59 Total: -50.02 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.00 kcal Total: -82.78 1.21 -81.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047736295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.526 kcal (2) G-P(sol) polarization free energy of solvation -82.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds