Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47199 * 270.00359 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00528 * 3 2 1 6 6 H 1.48503 * 109.46659 * 150.00304 * 3 2 1 7 7 C 1.38654 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00218 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99888 * 179.97438 * 7 2 1 10 10 C 1.35744 * 117.00290 * 174.97035 * 9 7 2 11 11 C 1.38953 * 120.03193 * 5.36155 * 10 9 7 12 12 C 1.38129 * 120.06942 * 179.97438 * 11 10 9 13 13 C 1.38205 * 120.13791 * 359.70560 * 12 11 10 14 14 C 1.38919 * 120.06503 * 0.55563 * 13 12 11 15 15 N 1.39947 * 120.03370 * 179.74525 * 14 13 12 16 16 C 1.34769 * 119.99783 * 214.84427 * 15 14 13 17 17 O 1.21585 * 120.00664 * 355.49481 * 16 15 14 18 18 N 1.34781 * 120.00100 * 175.49323 * 16 15 14 19 19 C 1.46499 * 120.00276 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47094 * 180.02562 * 19 18 16 21 21 O 1.42891 * 109.47344 * 64.99865 * 20 19 18 22 22 C 1.35903 * 117.00318 * 179.97438 * 21 20 19 23 23 C 1.38759 * 120.04756 * 359.72746 * 22 21 20 24 24 C 1.38127 * 119.96946 * 179.74822 * 23 22 21 25 25 C 1.38259 * 120.06978 * 0.54657 * 24 23 22 26 26 C 1.38369 * 120.09683 * 359.70788 * 25 24 23 27 27 Cl 1.73600 * 119.98249 * 180.02562 * 26 25 24 28 28 C 1.38281 * 120.02898 * 0.02562 * 26 25 24 29 29 C 1.38734 * 120.03753 * 185.34323 * 10 9 7 30 30 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.96557 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.93008 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.96760 * 180.26999 * 13 12 11 34 34 H 0.97001 * 119.99710 * 34.84729 * 15 14 13 35 35 H 0.97001 * 119.99656 * 0.02562 * 18 16 15 36 36 H 1.08996 * 109.46927 * 59.99941 * 19 18 16 37 37 H 1.08995 * 109.46780 * 300.00214 * 19 18 16 38 38 H 1.09005 * 109.46968 * 305.00105 * 20 19 18 39 39 H 1.09000 * 109.47183 * 185.00318 * 20 19 18 40 40 H 1.08004 * 120.01134 * 0.02562 * 23 22 21 41 41 H 1.08005 * 119.96140 * 180.25634 * 24 23 22 42 42 H 1.08002 * 119.95351 * 179.72631 * 25 24 23 43 43 H 1.08000 * 120.03044 * 180.02562 * 28 26 25 44 44 H 1.08007 * 120.06721 * 0.04272 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2009 -0.0011 10 6 3.9734 -2.4057 0.1045 11 6 3.2220 -3.5745 0.0945 12 6 3.8484 -4.8009 0.2013 13 6 5.2243 -4.8701 0.3122 14 6 5.9806 -3.7049 0.3283 15 7 7.3734 -3.7755 0.4460 16 6 8.0404 -2.8271 1.1329 17 8 7.4433 -1.8672 1.5805 18 7 9.3696 -2.9427 1.3238 19 6 10.0947 -1.9120 2.0710 20 6 11.5777 -2.2817 2.1417 21 8 12.1373 -2.2597 0.8271 22 6 13.4563 -2.5665 0.7128 23 6 14.1980 -2.8769 1.8437 24 6 15.5372 -3.1936 1.7250 25 6 16.1423 -3.1907 0.4818 26 6 15.4066 -2.8766 -0.6472 27 17 16.1691 -2.8746 -2.2068 28 6 14.0643 -2.5643 -0.5337 29 6 5.3542 -2.4715 0.2220 30 1 -0.4850 0.8400 0.0004 31 1 2.1471 -3.5239 0.0032 32 1 3.2622 -5.7079 0.1929 33 1 5.7115 -5.8307 0.3912 34 1 7.8585 -4.5070 0.0331 35 1 9.8461 -3.7083 0.9665 36 1 9.6888 -1.8417 3.0801 37 1 9.9835 -0.9520 1.5670 38 1 11.6833 -3.2807 2.5649 39 1 12.1017 -1.5629 2.7718 40 1 13.7273 -2.8751 2.8157 41 1 16.1135 -3.4391 2.6049 42 1 17.1906 -3.4344 0.3917 43 1 13.4899 -2.3194 -1.4149 44 1 5.9404 -1.5644 0.2303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048509491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = -35.127307 kcal Electronic energy + Delta-G solvation = -29450.207868 eV Core-core repulsion = 24974.253835 eV Total energy + Delta-G solvation = -4475.954033 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.84666 -40.34549 -38.90204 -38.32831 -36.92323 -36.71396 -34.99165 -34.13501 -32.31687 -31.69150 -30.82813 -29.87455 -29.38247 -28.15748 -25.17483 -24.40682 -23.25958 -22.67126 -21.93405 -21.33011 -20.69648 -19.06083 -18.56540 -18.09564 -17.41102 -16.84706 -16.75717 -16.50329 -15.74944 -15.68648 -15.43966 -15.15516 -14.85951 -14.61531 -14.40791 -14.21396 -13.98216 -13.83052 -13.71260 -13.52799 -13.21137 -12.83007 -12.49571 -12.43169 -12.32303 -12.24260 -12.17467 -11.72767 -11.58705 -11.41858 -11.36938 -11.17851 -10.94988 -10.81001 -10.23383 -9.96251 -9.70813 -9.44343 -9.31971 -9.23359 -8.85870 -8.80825 -7.74014 -7.26521 -6.35663 -4.01994 0.52874 0.75141 1.50317 2.03065 2.28028 2.53711 2.63043 3.03681 3.24786 3.31019 3.31984 3.50739 4.07444 4.07996 4.26248 4.31736 4.37713 4.48112 4.52015 4.55898 4.60004 4.71914 4.81980 4.95932 5.14348 5.17537 5.28820 5.42350 5.55325 5.60065 5.67687 5.73200 5.76352 5.93037 6.09898 6.15121 6.20279 6.32140 6.44417 6.71827 6.75028 6.96999 7.12274 7.18818 7.38084 7.64776 7.86460 7.95602 8.09305 8.59265 9.00116 9.63932 10.71767 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.001476 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.417089 B =18963.085585 C =19499.617048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.388 4.388 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.173 3.827 11 C -0.233 4.233 12 C -0.060 4.060 13 C -0.228 4.228 14 C 0.190 3.810 15 N -0.680 5.680 16 C 0.700 3.300 17 O -0.562 6.562 18 N -0.745 5.745 19 C 0.142 3.858 20 C 0.047 3.953 21 O -0.306 6.306 22 C 0.146 3.854 23 C -0.206 4.206 24 C -0.066 4.066 25 C -0.151 4.151 26 C 0.004 3.996 27 Cl -0.061 7.061 28 C -0.145 4.145 29 C -0.186 4.186 30 H 0.279 0.721 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.402 0.598 35 H 0.397 0.603 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.890 -10.064 3.294 35.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.119 6.119 10 C 0.120 3.880 11 C -0.253 4.253 12 C -0.079 4.079 13 C -0.250 4.250 14 C 0.097 3.903 15 N -0.328 5.328 16 C 0.400 3.600 17 O -0.437 6.437 18 N -0.403 5.403 19 C 0.018 3.982 20 C -0.029 4.029 21 O -0.220 6.220 22 C 0.100 3.900 23 C -0.225 4.225 24 C -0.085 4.085 25 C -0.170 4.170 26 C -0.023 4.023 27 Cl -0.032 7.032 28 C -0.165 4.165 29 C -0.208 4.208 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.237 0.763 35 H 0.231 0.769 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 33.184 -8.707 3.446 34.480 hybrid contribution 0.776 -0.175 -0.281 0.843 sum 33.960 -8.882 3.165 35.245 Atomic orbital electron populations 1.69649 1.05525 1.28420 1.48247 1.24449 0.95012 0.98801 0.95654 0.86213 0.80576 0.81439 0.78991 1.19902 1.20842 1.18084 1.20783 0.76885 0.96635 1.52015 0.87542 1.83583 1.22553 1.25616 1.80143 1.18876 0.91160 0.85550 0.92400 1.21298 1.01264 0.91839 1.10866 1.20538 0.93311 0.96844 0.97198 1.20312 0.93937 0.95672 1.15054 1.16924 0.80169 0.93553 0.99690 1.42434 1.06122 1.28431 1.55779 1.15923 0.81368 0.83242 0.79427 1.91018 1.66807 1.31420 1.54470 1.44988 1.06734 1.27464 1.61087 1.21243 0.86792 0.92210 0.98001 1.23224 0.93937 1.02610 0.83110 1.86162 1.20682 1.84039 1.31079 1.18756 0.83417 0.94484 0.93372 1.21403 0.95784 1.07089 0.98220 1.20917 0.93997 0.96402 0.97154 1.20993 1.00743 1.04124 0.91094 1.20602 0.92661 1.01840 0.87160 1.98396 1.81227 1.96873 1.26709 1.20257 0.93248 1.06035 0.96935 1.20193 0.92272 0.97606 1.10719 0.91122 0.84861 0.86762 0.87257 0.76303 0.76873 0.88915 0.90036 0.90852 0.89782 0.84697 0.84668 0.84743 0.83947 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.48 0.77 -25.14 16 2 C 0.06 1.85 5.49 -17.51 -0.10 1.75 16 3 Si 0.90 22.61 28.62 -169.99 -4.86 17.74 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 8 H 0.11 3.11 5.43 -52.49 -0.29 2.83 16 9 O -0.21 -5.96 8.58 0.07 0.00 -5.96 16 10 C 0.17 4.23 6.64 -39.13 -0.26 3.97 16 11 C -0.23 -5.13 9.17 -39.36 -0.36 -5.49 16 12 C -0.06 -1.08 10.03 -39.63 -0.40 -1.48 16 13 C -0.23 -3.77 9.96 -39.34 -0.39 -4.16 16 14 C 0.19 3.43 6.30 -83.71 -0.53 2.90 16 15 N -0.68 -9.34 5.34 -14.24 -0.08 -9.42 16 16 C 0.70 10.27 8.41 -86.92 -0.73 9.54 16 17 O -0.56 -11.09 13.78 5.29 0.07 -11.02 16 18 N -0.75 -7.16 5.51 -65.23 -0.36 -7.52 16 19 C 0.14 1.15 6.06 -4.04 -0.02 1.13 16 20 C 0.05 0.24 4.87 37.16 0.18 0.42 16 21 O -0.31 -2.30 10.08 -19.43 -0.20 -2.50 16 22 C 0.15 1.04 6.69 -39.22 -0.26 0.78 16 23 C -0.21 -1.11 9.04 -39.43 -0.36 -1.47 16 24 C -0.07 -0.32 10.04 -39.61 -0.40 -0.72 16 25 C -0.15 -0.86 9.83 -39.53 -0.39 -1.25 16 26 C 0.00 0.03 6.32 -39.52 -0.25 -0.22 16 27 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 28 C -0.15 -1.11 9.77 -39.40 -0.38 -1.49 16 29 C -0.19 -4.13 8.64 -39.21 -0.34 -4.47 16 30 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.13 3.05 5.63 -52.49 -0.30 2.75 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.40 3.82 8.84 -40.82 -0.36 3.46 16 35 H 0.40 2.71 8.49 -40.82 -0.35 2.36 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.26 7.68 -51.93 -0.40 -0.14 16 39 H 0.08 0.29 7.65 -51.93 -0.40 -0.10 16 40 H 0.14 0.45 6.30 -52.48 -0.33 0.12 16 41 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 3.19 6.22 -52.48 -0.33 2.86 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -35.13 394.46 -9.72 -44.85 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.84 Total: 6.14 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -4.68 Total: -11.19 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.34 Total: -42.08 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.12 Total: -19.47 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.86 Total: 17.74 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.13 -9.72 -44.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048509491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.721 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds