Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47199 * 270.00359 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00528 * 3 2 1 6 6 H 1.48503 * 109.46659 * 150.00304 * 3 2 1 7 7 C 1.38654 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00218 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99888 * 179.97438 * 7 2 1 10 10 C 1.35744 * 117.00290 * 174.97035 * 9 7 2 11 11 C 1.38953 * 120.03193 * 5.36155 * 10 9 7 12 12 C 1.38129 * 120.06942 * 179.97438 * 11 10 9 13 13 C 1.38205 * 120.13791 * 359.70560 * 12 11 10 14 14 C 1.38919 * 120.06503 * 0.55563 * 13 12 11 15 15 N 1.39947 * 120.03370 * 179.74525 * 14 13 12 16 16 C 1.34769 * 119.99783 * 214.84427 * 15 14 13 17 17 O 1.21585 * 120.00664 * 355.49481 * 16 15 14 18 18 N 1.34781 * 120.00100 * 175.49323 * 16 15 14 19 19 C 1.46499 * 120.00276 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47094 * 180.02562 * 19 18 16 21 21 O 1.42891 * 109.47344 * 64.99865 * 20 19 18 22 22 C 1.35903 * 117.00318 * 179.97438 * 21 20 19 23 23 C 1.38759 * 120.04756 * 359.72746 * 22 21 20 24 24 C 1.38127 * 119.96946 * 179.74822 * 23 22 21 25 25 C 1.38259 * 120.06978 * 0.54657 * 24 23 22 26 26 C 1.38369 * 120.09683 * 359.70788 * 25 24 23 27 27 Cl 1.73600 * 119.98249 * 180.02562 * 26 25 24 28 28 C 1.38281 * 120.02898 * 0.02562 * 26 25 24 29 29 C 1.38734 * 120.03753 * 185.34323 * 10 9 7 30 30 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.96557 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.93008 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.96760 * 180.26999 * 13 12 11 34 34 H 0.97001 * 119.99710 * 34.84729 * 15 14 13 35 35 H 0.97001 * 119.99656 * 0.02562 * 18 16 15 36 36 H 1.08996 * 109.46927 * 59.99941 * 19 18 16 37 37 H 1.08995 * 109.46780 * 300.00214 * 19 18 16 38 38 H 1.09005 * 109.46968 * 305.00105 * 20 19 18 39 39 H 1.09000 * 109.47183 * 185.00318 * 20 19 18 40 40 H 1.08004 * 120.01134 * 0.02562 * 23 22 21 41 41 H 1.08005 * 119.96140 * 180.25634 * 24 23 22 42 42 H 1.08002 * 119.95351 * 179.72631 * 25 24 23 43 43 H 1.08000 * 120.03044 * 180.02562 * 28 26 25 44 44 H 1.08007 * 120.06721 * 0.04272 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2009 -0.0011 10 6 3.9734 -2.4057 0.1045 11 6 3.2220 -3.5745 0.0945 12 6 3.8484 -4.8009 0.2013 13 6 5.2243 -4.8701 0.3122 14 6 5.9806 -3.7049 0.3283 15 7 7.3734 -3.7755 0.4460 16 6 8.0404 -2.8271 1.1329 17 8 7.4433 -1.8672 1.5805 18 7 9.3696 -2.9427 1.3238 19 6 10.0947 -1.9120 2.0710 20 6 11.5777 -2.2817 2.1417 21 8 12.1373 -2.2597 0.8271 22 6 13.4563 -2.5665 0.7128 23 6 14.1980 -2.8769 1.8437 24 6 15.5372 -3.1936 1.7250 25 6 16.1423 -3.1907 0.4818 26 6 15.4066 -2.8766 -0.6472 27 17 16.1691 -2.8746 -2.2068 28 6 14.0643 -2.5643 -0.5337 29 6 5.3542 -2.4715 0.2220 30 1 -0.4850 0.8400 0.0004 31 1 2.1471 -3.5239 0.0032 32 1 3.2622 -5.7079 0.1929 33 1 5.7115 -5.8307 0.3912 34 1 7.8585 -4.5070 0.0331 35 1 9.8461 -3.7083 0.9665 36 1 9.6888 -1.8417 3.0801 37 1 9.9835 -0.9520 1.5670 38 1 11.6833 -3.2807 2.5649 39 1 12.1017 -1.5629 2.7718 40 1 13.7273 -2.8751 2.8157 41 1 16.1135 -3.4391 2.6049 42 1 17.1906 -3.4344 0.3917 43 1 13.4899 -2.3194 -1.4149 44 1 5.9404 -1.5644 0.2303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048509491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = -59.058754 kcal Electronic energy + Delta-G solvation = -29451.245613 eV Core-core repulsion = 24974.253835 eV Total energy + Delta-G solvation = -4476.991779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.75401 -41.19730 -40.53362 -38.90600 -38.38061 -37.31730 -35.94585 -35.54892 -34.43217 -32.21121 -31.52520 -31.12120 -30.45826 -29.37766 -27.21787 -25.11396 -23.96217 -23.65145 -23.00696 -22.46097 -22.02176 -19.93575 -19.77737 -19.48629 -19.11660 -17.71082 -17.28399 -16.99075 -16.91012 -16.84452 -16.64900 -16.35166 -16.02676 -15.71316 -15.70077 -15.62190 -15.29380 -14.77520 -14.58257 -14.41412 -14.29598 -14.19324 -14.18307 -13.89989 -13.25119 -13.03312 -12.95781 -12.80988 -12.74312 -12.65380 -12.49827 -12.18822 -12.06724 -11.86919 -11.80835 -11.58227 -11.34025 -11.00624 -10.86426 -10.23310 -9.89575 -9.35118 -9.30105 -8.88715 -8.50745 -6.22315 0.09423 0.31782 0.45166 0.66904 1.02183 1.27283 1.31397 1.49061 1.52082 2.03023 2.14685 2.27055 2.61163 2.76175 2.98017 3.11974 3.34127 3.63157 3.81559 4.02500 4.07339 4.13069 4.13888 4.19897 4.32987 4.37520 4.41437 4.43154 4.58360 4.65013 4.72919 4.75300 4.81650 4.95033 5.13272 5.25809 5.33105 5.34443 5.36095 5.38559 5.46265 5.55923 5.69721 5.80776 5.91541 5.95371 6.24803 6.31596 6.84373 6.96888 7.47254 7.61535 8.60650 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.001476 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.417089 B =18963.085585 C =19499.617048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.275 1.275 7 C -0.397 4.397 8 H 0.089 0.911 9 O -0.250 6.250 10 C 0.133 3.867 11 C -0.249 4.249 12 C -0.051 4.051 13 C -0.194 4.194 14 C 0.200 3.800 15 N -0.665 5.665 16 C 0.695 3.305 17 O -0.617 6.617 18 N -0.721 5.721 19 C 0.137 3.863 20 C 0.053 3.947 21 O -0.326 6.326 22 C 0.134 3.866 23 C -0.203 4.203 24 C -0.063 4.063 25 C -0.155 4.155 26 C -0.008 4.008 27 Cl -0.070 7.070 28 C -0.166 4.166 29 C -0.204 4.204 30 H 0.285 0.715 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.428 0.572 35 H 0.415 0.585 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.375 -12.882 4.665 39.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.106 0.894 9 O -0.158 6.158 10 C 0.084 3.916 11 C -0.269 4.269 12 C -0.070 4.070 13 C -0.215 4.215 14 C 0.105 3.895 15 N -0.315 5.315 16 C 0.395 3.605 17 O -0.496 6.496 18 N -0.379 5.379 19 C 0.013 3.987 20 C -0.022 4.022 21 O -0.240 6.240 22 C 0.088 3.912 23 C -0.221 4.221 24 C -0.081 4.081 25 C -0.174 4.174 26 C -0.035 4.035 27 Cl -0.041 7.041 28 C -0.185 4.185 29 C -0.226 4.226 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.174 0.826 33 H 0.184 0.816 34 H 0.267 0.733 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.178 0.822 41 H 0.183 0.817 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 36.766 -11.604 4.797 38.851 hybrid contribution -0.019 0.397 -0.657 0.768 sum 36.747 -11.207 4.140 38.641 Atomic orbital electron populations 1.69712 1.06489 1.29445 1.50319 1.25159 0.95847 1.01681 0.95747 0.85343 0.78545 0.78286 0.79305 1.18898 1.18684 1.20039 1.20772 0.77895 0.96339 1.52314 0.89407 1.83530 1.21540 1.27671 1.83058 1.19384 0.92288 0.85495 0.94457 1.21351 1.00452 0.93024 1.12083 1.21011 0.94503 0.96451 0.95013 1.20896 0.93176 0.97171 1.10228 1.17051 0.82270 0.92548 0.97650 1.42222 1.04537 1.29116 1.55588 1.16187 0.82658 0.82501 0.79138 1.91004 1.68345 1.33631 1.56615 1.44842 1.04873 1.28139 1.60001 1.21377 0.88830 0.90908 0.97552 1.23278 0.91536 1.04710 0.82681 1.86117 1.21128 1.84408 1.32359 1.18847 0.83395 0.95175 0.93737 1.21709 0.95959 1.05897 0.98583 1.21301 0.94037 0.95113 0.97672 1.21274 1.01465 1.03575 0.91072 1.20735 0.92708 1.02740 0.87324 1.98388 1.81287 1.96970 1.27479 1.20307 0.93693 1.07297 0.97248 1.20228 0.91318 0.98859 1.12155 0.90565 0.86853 0.82576 0.81644 0.73307 0.74767 0.88494 0.92286 0.88235 0.87579 0.82210 0.81742 0.83367 0.84994 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.96 21.61 0.30 -56.02 16 2 C 0.01 0.86 5.49 84.83 0.47 1.33 16 3 Si 0.96 48.70 28.62 68.60 1.96 50.66 16 4 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 7 C -0.40 -24.52 9.95 67.92 0.68 -23.84 16 8 H 0.09 5.55 5.43 -2.91 -0.02 5.53 16 9 O -0.25 -14.84 8.58 -22.68 -0.19 -15.04 16 10 C 0.13 6.81 6.64 22.56 0.15 6.96 16 11 C -0.25 -11.17 9.17 22.42 0.21 -10.96 16 12 C -0.05 -1.69 10.03 22.24 0.22 -1.46 16 13 C -0.19 -5.48 9.96 22.43 0.22 -5.26 16 14 C 0.20 6.76 6.30 38.13 0.24 7.00 16 15 N -0.67 -16.29 5.34 -317.23 -1.69 -17.98 16 16 C 0.69 19.39 8.41 179.06 1.51 20.90 16 17 O -0.62 -24.69 13.78 -3.98 -0.05 -24.75 16 18 N -0.72 -12.22 5.51 -478.55 -2.64 -14.85 16 19 C 0.14 2.00 6.06 86.38 0.52 2.53 16 20 C 0.05 0.38 4.87 71.98 0.35 0.73 16 21 O -0.33 -4.25 10.08 -92.45 -0.93 -5.18 16 22 C 0.13 1.66 6.69 22.50 0.15 1.81 16 23 C -0.20 -1.49 9.04 22.37 0.20 -1.29 16 24 C -0.06 -0.39 10.04 22.25 0.22 -0.17 16 25 C -0.16 -1.44 9.83 22.31 0.22 -1.22 16 26 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 27 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.06 16 28 C -0.17 -2.44 9.77 22.39 0.22 -2.22 16 29 C -0.20 -9.24 8.64 22.51 0.19 -9.04 16 30 H 0.28 16.01 8.31 -92.71 -0.77 15.23 16 31 H 0.11 5.49 5.63 -2.91 -0.02 5.47 16 32 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.43 6.13 8.84 -92.71 -0.82 5.31 16 35 H 0.42 4.21 8.49 -92.71 -0.79 3.42 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 0.24 7.68 -2.38 -0.02 0.23 16 39 H 0.11 0.36 7.65 -2.39 -0.02 0.34 16 40 H 0.16 0.30 6.30 -2.91 -0.02 0.28 16 41 H 0.17 0.04 8.06 -2.91 -0.02 0.01 16 42 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.11 5.57 6.22 -2.91 -0.02 5.55 16 Total: -1.00 -84.34 394.46 2.07 -82.27 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.52 Total: 16.12 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.91 Total: -14.19 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -4.03 Total: -88.85 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.18 Total: -44.96 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.96 Total: 50.66 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -84.34 2.07 -82.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048509491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.214 kcal (2) G-P(sol) polarization free energy of solvation -84.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds