Wall clock time and date at job start Tue Mar 31 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.53005 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.53000 * 110.53300 * 302.83038 * 4 3 2 6 6 N 1.47305 * 110.72909 * 65.74806 * 4 3 2 7 7 C 1.34533 * 106.61962 * 118.37100 * 6 4 3 8 8 O 1.21537 * 123.77604 * 180.20705 * 7 6 4 9 9 N 1.33789 * 112.45580 * 0.38407 * 7 6 4 10 10 C 1.46491 * 124.18191 * 179.86516 * 9 7 6 11 11 C 1.53003 * 109.47496 * 269.69759 * 10 9 7 12 12 H 1.09002 * 109.46782 * 59.99646 * 11 10 9 13 13 O 1.42896 * 109.47073 * 300.00198 * 11 10 9 14 14 C 1.52995 * 109.47620 * 179.97438 * 11 10 9 15 15 O 1.42899 * 109.47055 * 184.99709 * 14 11 10 16 16 C 1.35680 * 116.99791 * 179.97438 * 15 14 11 17 17 C 1.39307 * 119.81735 * 359.73563 * 16 15 14 18 18 C 1.36443 * 120.18498 * 179.75871 * 17 16 15 19 19 C 1.40827 * 119.80746 * 0.50427 * 18 17 16 20 20 C 1.41219 * 120.17498 * 179.72010 * 19 18 17 21 21 H 1.08003 * 119.99476 * 155.16935 * 20 19 18 22 22 C 1.39890 * 120.00486 * 335.16951 * 20 19 18 23 23 N 1.30882 * 119.99551 * 342.15984 * 22 20 19 24 24 Si 1.86798 * 119.99945 * 162.15629 * 22 20 19 25 25 H 1.48505 * 109.46917 * 94.66010 * 24 22 20 26 26 H 1.48499 * 109.46757 * 214.65756 * 24 22 20 27 27 H 1.48492 * 109.47195 * 334.65822 * 24 22 20 28 28 C 1.40836 * 119.64691 * 359.74975 * 19 18 17 29 29 C 1.36436 * 119.80625 * 359.97438 * 28 19 18 30 30 C 1.34768 * 111.64384 * 359.59401 * 9 7 6 31 31 O 1.21242 * 127.16164 * 180.19620 * 30 9 7 32 32 H 1.08999 * 109.47337 * 59.99575 * 1 2 3 33 33 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47124 * 300.00014 * 1 2 3 35 35 H 1.08997 * 109.46979 * 240.00359 * 2 1 3 36 36 H 1.09000 * 109.47804 * 120.00175 * 2 1 3 37 37 H 1.08997 * 109.47377 * 60.00676 * 3 2 1 38 38 H 1.08999 * 109.47417 * 300.00376 * 3 2 1 39 39 H 1.09007 * 109.47109 * 297.87358 * 5 4 3 40 40 H 1.09003 * 109.47167 * 57.87046 * 5 4 3 41 41 H 1.08993 * 109.47301 * 177.87097 * 5 4 3 42 42 H 0.96999 * 126.69546 * 298.62066 * 6 4 3 43 43 H 1.09000 * 109.47652 * 149.69310 * 10 9 7 44 44 H 1.09006 * 109.47373 * 29.69490 * 10 9 7 45 45 H 0.96709 * 113.99970 * 299.99396 * 13 11 10 46 46 H 1.09007 * 109.46878 * 64.99979 * 14 11 10 47 47 H 1.09001 * 109.47159 * 305.00635 * 14 11 10 48 48 H 1.08005 * 119.91048 * 0.02562 * 17 16 15 49 49 H 1.08007 * 120.09573 * 180.25170 * 18 17 16 50 50 H 0.97002 * 119.99495 * 179.97438 * 23 22 20 51 51 H 1.07998 * 120.09519 * 179.97438 * 28 19 18 52 52 H 1.08004 * 119.90466 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.1072 0.6656 1.2030 6 7 4.0909 0.8769 -1.2571 7 6 4.7997 1.8524 -1.8536 8 8 5.3666 1.7200 -2.9204 9 7 4.8139 2.9836 -1.1392 10 6 5.5106 4.2059 -1.5473 11 6 6.9383 4.1871 -0.9974 12 1 7.4675 3.3189 -1.3902 13 8 6.8983 4.1153 0.4292 14 6 7.6661 5.4634 -1.4241 15 8 9.0322 5.3937 -1.0106 16 6 9.8225 6.4539 -1.3141 17 6 9.2893 7.5402 -2.0042 18 6 10.0761 8.6125 -2.3090 19 6 11.4333 8.6143 -1.9332 20 6 12.2561 9.7174 -2.2500 21 1 13.1346 9.9237 -1.6566 22 6 11.9333 10.5430 -3.3322 23 7 11.1018 10.1220 -4.2511 24 14 12.6889 12.2461 -3.4656 25 1 13.9009 12.1843 -4.3215 26 1 11.7035 13.1788 -4.0693 27 1 13.0628 12.7292 -2.1121 28 6 11.9658 7.5097 -1.2405 29 6 11.1640 6.4479 -0.9385 30 6 4.1033 2.8615 -0.0007 31 8 3.9276 3.7098 0.8476 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6766 1.9564 -0.8899 39 1 3.7850 1.1530 2.1233 40 1 3.7228 -0.3541 1.1781 41 1 5.1962 0.6444 1.1651 42 1 3.9475 -0.0224 -1.5912 43 1 4.9814 5.0742 -1.1546 44 1 5.5411 4.2607 -2.6356 45 1 6.4412 4.8576 0.8477 46 1 7.1893 6.3263 -0.9590 47 1 7.6192 5.5632 -2.5086 48 1 8.2492 7.5356 -2.2951 49 1 9.6602 9.4557 -2.8406 50 1 10.8777 10.6946 -5.0013 51 1 13.0057 7.5033 -0.9492 52 1 11.5706 5.6002 -0.4069 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051373761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:30 Heat of formation + Delta-G solvation = -143.538121 kcal Electronic energy + Delta-G solvation = -34238.188726 eV Core-core repulsion = 29588.490671 eV Total energy + Delta-G solvation = -4649.698055 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.69340 -40.68223 -39.77566 -39.13103 -38.14890 -37.61968 -36.44613 -35.21680 -34.63897 -32.16360 -31.57504 -31.50742 -30.87177 -28.11617 -27.84630 -26.53649 -25.37795 -24.13354 -23.35381 -22.77654 -22.11228 -21.50989 -21.44298 -19.28703 -19.18953 -18.65955 -18.07935 -17.92248 -17.50769 -17.16322 -16.94180 -16.73487 -16.35324 -16.10342 -16.01398 -15.73666 -15.54265 -15.38099 -15.26946 -15.10554 -14.65533 -14.39755 -14.20936 -13.87146 -13.81868 -13.57804 -13.53548 -13.29033 -13.18026 -13.13548 -12.77533 -12.75985 -12.75256 -12.45545 -12.39306 -12.27596 -12.17534 -11.91006 -11.75669 -11.64476 -11.56602 -11.49974 -11.20505 -11.06602 -10.87588 -10.78813 -10.48310 -9.58026 -8.92363 -8.61006 -6.23416 0.53857 0.92655 1.03313 1.03515 1.39624 1.49192 1.55600 1.83293 2.07522 2.22747 2.46294 2.71613 2.83603 3.23912 3.44550 3.62671 3.67389 3.69506 3.74705 3.79139 4.01356 4.14245 4.18850 4.26800 4.30351 4.32054 4.36974 4.44028 4.49628 4.54130 4.69586 4.71322 4.74889 4.82216 4.88883 4.89801 4.99570 5.00166 5.11341 5.14391 5.27756 5.35329 5.35943 5.47364 5.50615 5.64942 5.76171 5.93689 5.95619 6.05228 6.22345 6.31466 6.53821 6.59340 6.77483 6.94478 7.02622 7.08391 8.36169 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.001521 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.038919 B =18405.070159 C =18625.923526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.129 3.871 5 C -0.147 4.147 6 N -0.699 5.699 7 C 0.698 3.302 8 O -0.580 6.580 9 N -0.571 5.571 10 C 0.091 3.909 11 C 0.109 3.891 12 H 0.093 0.907 13 O -0.559 6.559 14 C 0.035 3.965 15 O -0.328 6.328 16 C -0.003 4.003 17 C -0.174 4.174 18 C -0.153 4.153 19 C 0.054 3.946 20 C -0.500 4.500 21 H 0.075 0.925 22 C 0.035 3.965 23 N -0.831 5.831 24 Si 0.981 3.019 25 H -0.264 1.264 26 H -0.266 1.266 27 H -0.259 1.259 28 C -0.206 4.206 29 C -0.122 4.122 30 C 0.529 3.471 31 O -0.480 6.480 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.450 0.550 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.386 0.614 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.108 0.892 50 H 0.287 0.713 51 H 0.109 0.891 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.859 -18.967 7.722 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.147 4.147 4 C 0.039 3.961 5 C -0.205 4.205 6 N -0.365 5.365 7 C 0.399 3.601 8 O -0.456 6.456 9 N -0.316 5.316 10 C -0.031 4.031 11 C 0.048 3.952 12 H 0.111 0.889 13 O -0.366 6.366 14 C -0.042 4.042 15 O -0.244 6.244 16 C -0.047 4.047 17 C -0.193 4.193 18 C -0.173 4.173 19 C 0.052 3.948 20 C -0.529 4.529 21 H 0.094 0.906 22 C -0.179 4.179 23 N -0.458 5.458 24 Si 0.802 3.198 25 H -0.189 1.189 26 H -0.190 1.190 27 H -0.183 1.183 28 C -0.225 4.225 29 C -0.141 4.141 30 C 0.317 3.683 31 O -0.350 6.350 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.297 0.703 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.235 0.765 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.139 0.861 49 H 0.126 0.874 50 H 0.098 0.902 51 H 0.127 0.873 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.354 -19.150 7.387 31.092 hybrid contribution 0.258 1.243 -0.741 1.470 sum -23.096 -17.908 6.646 29.971 Atomic orbital electron populations 1.21763 0.95144 1.02312 1.01933 1.21576 0.96452 0.94214 1.03557 1.21855 0.88204 1.00413 1.04250 1.21620 0.97778 0.89382 0.87348 1.22092 1.01455 1.02064 0.94850 1.45599 1.53699 1.14964 1.22206 1.16054 0.79747 0.81196 0.83145 1.91021 1.50126 1.82222 1.22246 1.46225 1.48738 1.14070 1.22611 1.22279 0.91801 0.85678 1.03357 1.22078 0.93799 0.97371 0.81939 0.88862 1.86591 1.80972 1.51037 1.17964 1.23309 0.81617 0.98747 1.00504 1.85851 1.20984 1.40088 1.77483 1.18706 0.91432 0.89100 1.05423 1.20823 0.99843 0.95198 1.03439 1.20911 0.93757 0.98544 1.04093 1.17970 0.92644 0.92549 0.91625 1.19718 1.10323 1.10174 1.12715 0.90644 1.26717 0.94539 1.03198 0.93453 1.69891 1.29713 1.37759 1.08430 0.85209 0.78704 0.76402 0.79482 1.18868 1.19050 1.18303 1.20794 0.98694 0.94511 1.08528 1.19881 0.91378 0.99244 1.03551 1.21257 0.76584 0.90597 0.79849 1.90769 1.57792 1.47573 1.38819 0.93162 0.91838 0.92382 0.91126 0.89630 0.88803 0.91289 0.89274 0.87216 0.92595 0.70258 0.86096 0.86601 0.76462 0.90865 0.91171 0.86051 0.87431 0.90222 0.87289 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 71.98 0.71 0.06 16 2 C -0.12 -0.41 5.43 30.59 0.17 -0.24 16 3 C -0.11 -0.78 4.58 30.60 0.14 -0.64 16 4 C 0.13 1.42 1.01 2.99 0.00 1.42 16 5 C -0.15 -1.20 8.61 71.98 0.62 -0.58 16 6 N -0.70 -8.58 5.62 -439.82 -2.47 -11.05 16 7 C 0.70 14.72 8.62 179.44 1.55 16.27 16 8 O -0.58 -16.73 17.48 -3.83 -0.07 -16.80 16 9 N -0.57 -11.50 2.53 -773.12 -1.96 -13.46 16 10 C 0.09 1.83 5.39 86.38 0.47 2.29 16 11 C 0.11 2.81 3.52 30.59 0.11 2.91 16 12 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 13 O -0.56 -15.14 12.69 -144.35 -1.83 -16.97 16 14 C 0.03 1.05 4.37 71.98 0.31 1.36 16 15 O -0.33 -13.34 10.09 -85.35 -0.86 -14.20 16 16 C 0.00 -0.13 6.71 22.79 0.15 0.02 16 17 C -0.17 -8.16 8.96 22.11 0.20 -7.96 16 18 C -0.15 -8.16 8.64 22.48 0.19 -7.97 16 19 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 20 C -0.50 -27.38 9.04 23.40 0.21 -27.16 16 21 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 22 C 0.03 1.77 5.13 85.23 0.44 2.21 16 23 N -0.83 -43.88 10.97 21.82 0.24 -43.64 16 24 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 27 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 28 C -0.21 -10.48 9.74 22.48 0.22 -10.26 16 29 C -0.12 -5.80 9.92 22.11 0.22 -5.58 16 30 C 0.53 9.66 6.52 87.94 0.57 10.23 16 31 O -0.48 -10.60 17.70 -2.91 -0.05 -10.66 16 32 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.07 0.17 7.41 -2.39 -0.02 0.15 16 36 H 0.09 0.10 6.42 -2.39 -0.02 0.09 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.11 0.28 6.37 -2.39 -0.02 0.27 16 41 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.45 3.24 8.41 -92.71 -0.78 2.46 16 43 H 0.12 1.97 8.00 -2.39 -0.02 1.95 16 44 H 0.12 2.24 7.85 -2.38 -0.02 2.22 16 45 H 0.39 8.53 9.05 -74.05 -0.67 7.86 16 46 H 0.07 1.99 7.66 -2.38 -0.02 1.97 16 47 H 0.07 2.04 7.63 -2.39 -0.02 2.02 16 48 H 0.12 4.84 6.27 -2.91 -0.02 4.83 16 49 H 0.11 5.91 6.18 -2.91 -0.02 5.89 16 50 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 51 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 52 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -72.76 428.38 0.71 -72.05 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.48 Total: 34.86 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 6.16 Total: -20.74 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -4.19 Total: -68.15 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -2.81 Total: -58.63 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -72.76 0.71 -72.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.487 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds