Wall clock time and date at job start Tue Mar 31 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 C 1.52999 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.53431 * 66.37956 * 4 3 2 6 6 N 1.47307 * 110.60245 * 303.54333 * 4 3 2 7 7 C 1.34519 * 106.62592 * 241.47725 * 6 4 3 8 8 O 1.21534 * 123.77518 * 179.97438 * 7 6 4 9 9 N 1.33796 * 112.45389 * 359.97438 * 7 6 4 10 10 C 1.46498 * 124.17752 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47219 * 90.02464 * 10 9 7 12 12 H 1.08995 * 109.46887 * 60.00256 * 11 10 9 13 13 O 1.42899 * 109.47245 * 300.00206 * 11 10 9 14 14 C 1.53001 * 109.46958 * 179.97438 * 11 10 9 15 15 O 1.42903 * 109.46669 * 184.99844 * 14 11 10 16 16 C 1.35676 * 116.99853 * 180.02562 * 15 14 11 17 17 C 1.39307 * 119.81781 * 180.02562 * 16 15 14 18 18 C 1.36439 * 120.18804 * 180.02562 * 17 16 15 19 19 C 1.40838 * 119.80892 * 359.97438 * 18 17 16 20 20 C 1.41211 * 120.17955 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00183 * 335.43019 * 20 19 18 22 22 C 1.39888 * 120.00081 * 155.70530 * 20 19 18 23 23 N 1.30882 * 120.00034 * 341.95260 * 22 20 19 24 24 Si 1.86802 * 120.00386 * 161.95212 * 22 20 19 25 25 H 1.48501 * 109.46893 * 59.99959 * 24 22 20 26 26 H 1.48495 * 109.47377 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46967 * 300.00349 * 24 22 20 28 28 C 1.40841 * 119.64077 * 0.27684 * 19 18 17 29 29 C 1.36435 * 119.80882 * 359.44059 * 28 19 18 30 30 C 1.34766 * 111.64549 * 0.23060 * 9 7 6 31 31 O 1.21235 * 127.15548 * 179.73333 * 30 9 7 32 32 H 1.08993 * 109.47559 * 300.00031 * 1 2 3 33 33 H 1.09008 * 109.47024 * 60.00297 * 1 2 3 34 34 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47096 * 239.99765 * 2 1 3 36 36 H 1.09003 * 109.46841 * 120.00422 * 2 1 3 37 37 H 1.09004 * 109.47206 * 59.99832 * 3 2 1 38 38 H 1.08996 * 109.46885 * 300.00257 * 3 2 1 39 39 H 1.09007 * 109.46981 * 297.86595 * 5 4 3 40 40 H 1.09004 * 109.47605 * 57.86653 * 5 4 3 41 41 H 1.09002 * 109.47360 * 177.87258 * 5 4 3 42 42 H 0.97008 * 126.68522 * 61.43827 * 6 4 3 43 43 H 1.09003 * 109.47583 * 330.02713 * 10 9 7 44 44 H 1.08994 * 109.47231 * 210.02606 * 10 9 7 45 45 H 0.96710 * 113.99704 * 300.00138 * 13 11 10 46 46 H 1.09004 * 109.47231 * 65.00495 * 14 11 10 47 47 H 1.08994 * 109.47454 * 305.00307 * 14 11 10 48 48 H 1.08005 * 119.91144 * 0.02562 * 17 16 15 49 49 H 1.07997 * 120.09837 * 179.97438 * 18 17 16 50 50 H 0.96998 * 120.00423 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.09051 * 179.70679 * 28 19 18 52 52 H 1.08005 * 119.90643 * 180.29710 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1072 0.8681 -1.3118 6 7 4.0878 0.6806 1.1502 7 6 4.7991 1.5452 1.8959 8 8 5.3671 1.2405 2.9263 9 7 4.8114 2.7782 1.3766 10 6 5.5073 3.9180 1.9788 11 6 6.9366 3.9871 1.4371 12 1 6.9092 4.1089 0.3544 13 8 7.6285 2.7800 1.7633 14 6 7.6632 5.1779 2.0657 15 8 8.9572 5.3122 1.4745 16 6 9.7371 6.3275 1.9236 17 6 11.0095 6.5129 1.3875 18 6 11.8003 7.5312 1.8339 19 6 11.3267 8.3965 2.8392 20 6 12.1384 9.4532 3.3066 21 1 13.2129 9.3884 3.2188 22 6 11.5511 10.5816 3.8886 23 7 10.2818 10.8334 3.6924 24 14 12.5783 11.7290 4.9458 25 1 13.6935 12.2823 4.1362 26 1 11.7274 12.8409 5.4405 27 1 13.1309 10.9763 6.1004 28 6 10.0412 8.1988 3.3795 29 6 9.2609 7.1793 2.9179 30 6 4.0999 2.8433 0.2339 31 8 3.9215 3.8192 -0.4630 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9562 -0.8899 39 1 3.7848 -0.1682 -1.4138 40 1 3.7232 1.4521 -2.1482 41 1 5.1964 0.9110 -1.3083 42 1 3.9435 -0.2609 1.3340 43 1 5.5347 3.7962 3.0617 44 1 4.9796 4.8386 1.7300 45 1 7.6912 2.6069 2.7127 46 1 7.7689 5.0141 3.1381 47 1 7.0881 6.0873 1.8919 48 1 11.3711 5.8488 0.6164 49 1 12.7867 7.6734 1.4176 50 1 9.8746 11.6160 4.0956 51 1 9.6726 8.8550 4.1540 52 1 8.2729 7.0292 3.3278 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051373764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:36 Heat of formation + Delta-G solvation = -121.240444 kcal Electronic energy + Delta-G solvation = -34235.815594 eV Core-core repulsion = 29587.084439 eV Total energy + Delta-G solvation = -4648.731155 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.93399 -39.09666 -38.91469 -37.95516 -37.13644 -36.11561 -35.58872 -34.01041 -33.33797 -31.24364 -30.83076 -29.63149 -29.10469 -27.51757 -26.90437 -24.87434 -24.46557 -23.13516 -22.44770 -21.11323 -20.99111 -20.64507 -20.33326 -18.33742 -17.41635 -17.30465 -17.10214 -16.70899 -16.54131 -16.10734 -15.96764 -15.73992 -15.41299 -15.20852 -14.78224 -14.51831 -14.45630 -14.15903 -14.01377 -13.92848 -13.69217 -13.43165 -13.07926 -12.82636 -12.78468 -12.44780 -12.43992 -12.32885 -12.06512 -11.92999 -11.82348 -11.77170 -11.47172 -11.30250 -11.23993 -11.10075 -11.05507 -11.01401 -10.61923 -10.49710 -10.35711 -9.93550 -9.88976 -9.81202 -9.66241 -9.36124 -9.01179 -7.65179 -7.01172 -6.72835 -4.24909 1.28879 1.81813 2.68963 2.73192 2.78179 2.97224 3.07754 3.10629 3.22873 3.47090 3.83533 3.91133 3.95357 4.11371 4.29083 4.45041 4.48541 4.59393 4.61831 4.79997 4.82055 4.92298 4.99846 5.02976 5.06394 5.12609 5.18288 5.19993 5.23213 5.32768 5.42039 5.44515 5.53648 5.61235 5.61874 5.67672 5.70236 5.92984 6.10290 6.28655 6.41495 6.70933 6.72546 6.89441 7.02862 7.07016 7.28275 7.40775 7.56142 7.63557 7.83022 7.90594 8.00370 8.15611 8.44129 8.64870 8.90383 8.99420 10.22101 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.001530 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.206521 B =18298.120829 C =18552.871501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.122 3.878 5 C -0.148 4.148 6 N -0.721 5.721 7 C 0.709 3.291 8 O -0.537 6.537 9 N -0.567 5.567 10 C 0.087 3.913 11 C 0.096 3.904 12 H 0.109 0.891 13 O -0.544 6.544 14 C 0.042 3.958 15 O -0.317 6.317 16 C -0.011 4.011 17 C -0.111 4.111 18 C -0.196 4.196 19 C 0.088 3.912 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.800 5.800 24 Si 0.907 3.093 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.264 1.264 28 C -0.134 4.134 29 C -0.174 4.174 30 C 0.529 3.471 31 O -0.460 6.460 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.438 0.562 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.378 0.622 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.280 0.720 51 H 0.121 0.879 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 -19.881 -5.885 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.152 4.152 4 C 0.032 3.968 5 C -0.206 4.206 6 N -0.386 5.386 7 C 0.410 3.590 8 O -0.410 6.410 9 N -0.312 5.312 10 C -0.035 4.035 11 C 0.036 3.964 12 H 0.127 0.873 13 O -0.350 6.350 14 C -0.035 4.035 15 O -0.232 6.232 16 C -0.054 4.054 17 C -0.130 4.130 18 C -0.216 4.216 19 C 0.085 3.915 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.426 5.426 24 Si 0.732 3.268 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.189 1.189 28 C -0.154 4.154 29 C -0.193 4.193 30 C 0.315 3.685 31 O -0.329 6.329 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.283 0.717 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.226 0.774 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.091 0.909 51 H 0.139 0.861 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.333 -19.388 -6.412 28.817 hybrid contribution 0.106 0.564 1.360 1.476 sum -20.227 -18.824 -5.051 28.089 Atomic orbital electron populations 1.21754 0.95056 1.02026 1.02178 1.21533 0.96602 0.95416 1.02529 1.21851 0.90017 0.99046 1.04314 1.21485 0.96719 0.89076 0.89547 1.22028 1.02452 1.02330 0.93836 1.45650 1.55205 1.12476 1.25232 1.15767 0.79378 0.80577 0.83306 1.90999 1.47986 1.78829 1.23156 1.46171 1.48549 1.11395 1.25127 1.22357 0.93529 0.87718 0.99873 1.22236 0.88080 0.84725 1.01393 0.87304 1.86606 1.78081 1.40481 1.29795 1.22979 0.85664 0.97603 0.97283 1.85858 1.25301 1.49828 1.62248 1.18587 0.92548 0.92508 1.01781 1.19610 0.92204 0.99726 1.01412 1.20601 0.99931 0.99774 1.01292 1.17598 0.92368 0.91796 0.89704 1.19440 0.94678 1.00594 1.34622 0.90515 1.25874 0.95113 0.98262 0.94890 1.69830 1.12517 1.25268 1.35021 0.86385 0.80422 0.79209 0.80790 1.19044 1.20434 1.18893 1.20931 0.95757 0.97247 1.01431 1.20594 0.99427 0.98893 1.00360 1.20824 0.77320 0.90435 0.79947 1.90824 1.56917 1.36554 1.48593 0.92590 0.92396 0.92380 0.91097 0.91708 0.90836 0.89111 0.90067 0.89715 0.91065 0.71738 0.87714 0.87350 0.77383 0.92423 0.91954 0.88503 0.88190 0.90943 0.86144 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.12 -0.39 5.52 -26.73 -0.15 -0.54 16 3 C -0.11 -0.54 4.54 -26.73 -0.12 -0.66 16 4 C 0.12 0.79 1.01 -132.10 -0.13 0.66 16 5 C -0.15 -0.77 8.72 37.16 0.32 -0.45 16 6 N -0.72 -4.93 5.41 -52.94 -0.29 -5.22 16 7 C 0.71 7.53 8.17 -88.02 -0.72 6.81 16 8 O -0.54 -7.28 17.13 5.34 0.09 -7.18 16 9 N -0.57 -5.96 2.53 -120.73 -0.31 -6.26 16 10 C 0.09 0.92 5.39 -4.04 -0.02 0.90 16 11 C 0.10 1.28 3.52 -26.73 -0.09 1.19 16 12 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 13 O -0.54 -7.93 12.47 -41.28 -0.51 -8.44 16 14 C 0.04 0.66 4.37 37.16 0.16 0.82 16 15 O -0.32 -6.57 10.09 -23.56 -0.24 -6.81 16 16 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 17 C -0.11 -2.64 9.92 -39.83 -0.40 -3.03 16 18 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 19 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 20 C -0.46 -12.38 9.04 -37.84 -0.34 -12.72 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.80 -20.77 10.97 55.54 0.61 -20.17 16 24 Si 0.91 18.78 29.60 -169.99 -5.03 13.75 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 29 C -0.17 -4.09 8.96 -39.83 -0.36 -4.44 16 30 C 0.53 5.30 6.98 -10.55 -0.07 5.22 16 31 O -0.46 -5.74 17.75 5.60 0.10 -5.64 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 34 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.17 6.75 -51.93 -0.35 -0.18 16 36 H 0.06 0.19 7.04 -51.93 -0.37 -0.18 16 37 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.25 6.82 -51.93 -0.35 -0.11 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.44 2.01 8.12 -40.82 -0.33 1.68 16 43 H 0.10 1.00 7.86 -51.93 -0.41 0.60 16 44 H 0.11 1.03 8.00 -51.93 -0.42 0.61 16 45 H 0.38 4.77 8.98 45.56 0.41 5.18 16 46 H 0.06 0.85 7.65 -51.93 -0.40 0.45 16 47 H 0.06 0.94 7.65 -51.93 -0.40 0.54 16 48 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 49 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 50 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 51 H 0.12 3.21 6.17 -52.49 -0.32 2.89 16 52 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 LS Contribution 427.87 15.07 6.45 6.45 Total: -1.00 -32.93 427.87 -9.38 -42.32 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.04 Total: 9.66 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.22 Total: -12.44 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.02 Total: -31.65 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.56 Total: -28.08 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -32.93 -9.38 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.922 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds