Wall clock time and date at job start Tue Mar 31 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 C 1.52999 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.53431 * 66.37956 * 4 3 2 6 6 N 1.47307 * 110.60245 * 303.54333 * 4 3 2 7 7 C 1.34519 * 106.62592 * 241.47725 * 6 4 3 8 8 O 1.21534 * 123.77518 * 179.97438 * 7 6 4 9 9 N 1.33796 * 112.45389 * 359.97438 * 7 6 4 10 10 C 1.46498 * 124.17752 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47219 * 90.02464 * 10 9 7 12 12 H 1.08995 * 109.46887 * 60.00256 * 11 10 9 13 13 O 1.42899 * 109.47245 * 300.00206 * 11 10 9 14 14 C 1.53001 * 109.46958 * 179.97438 * 11 10 9 15 15 O 1.42903 * 109.46669 * 184.99844 * 14 11 10 16 16 C 1.35676 * 116.99853 * 180.02562 * 15 14 11 17 17 C 1.39307 * 119.81781 * 180.02562 * 16 15 14 18 18 C 1.36439 * 120.18804 * 180.02562 * 17 16 15 19 19 C 1.40838 * 119.80892 * 359.97438 * 18 17 16 20 20 C 1.41211 * 120.17955 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00183 * 335.43019 * 20 19 18 22 22 C 1.39888 * 120.00081 * 155.70530 * 20 19 18 23 23 N 1.30882 * 120.00034 * 341.95260 * 22 20 19 24 24 Si 1.86802 * 120.00386 * 161.95212 * 22 20 19 25 25 H 1.48501 * 109.46893 * 59.99959 * 24 22 20 26 26 H 1.48495 * 109.47377 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46967 * 300.00349 * 24 22 20 28 28 C 1.40841 * 119.64077 * 0.27684 * 19 18 17 29 29 C 1.36435 * 119.80882 * 359.44059 * 28 19 18 30 30 C 1.34766 * 111.64549 * 0.23060 * 9 7 6 31 31 O 1.21235 * 127.15548 * 179.73333 * 30 9 7 32 32 H 1.08993 * 109.47559 * 300.00031 * 1 2 3 33 33 H 1.09008 * 109.47024 * 60.00297 * 1 2 3 34 34 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47096 * 239.99765 * 2 1 3 36 36 H 1.09003 * 109.46841 * 120.00422 * 2 1 3 37 37 H 1.09004 * 109.47206 * 59.99832 * 3 2 1 38 38 H 1.08996 * 109.46885 * 300.00257 * 3 2 1 39 39 H 1.09007 * 109.46981 * 297.86595 * 5 4 3 40 40 H 1.09004 * 109.47605 * 57.86653 * 5 4 3 41 41 H 1.09002 * 109.47360 * 177.87258 * 5 4 3 42 42 H 0.97008 * 126.68522 * 61.43827 * 6 4 3 43 43 H 1.09003 * 109.47583 * 330.02713 * 10 9 7 44 44 H 1.08994 * 109.47231 * 210.02606 * 10 9 7 45 45 H 0.96710 * 113.99704 * 300.00138 * 13 11 10 46 46 H 1.09004 * 109.47231 * 65.00495 * 14 11 10 47 47 H 1.08994 * 109.47454 * 305.00307 * 14 11 10 48 48 H 1.08005 * 119.91144 * 0.02562 * 17 16 15 49 49 H 1.07997 * 120.09837 * 179.97438 * 18 17 16 50 50 H 0.96998 * 120.00423 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.09051 * 179.70679 * 28 19 18 52 52 H 1.08005 * 119.90643 * 180.29710 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1072 0.8681 -1.3118 6 7 4.0878 0.6806 1.1502 7 6 4.7991 1.5452 1.8959 8 8 5.3671 1.2405 2.9263 9 7 4.8114 2.7782 1.3766 10 6 5.5073 3.9180 1.9788 11 6 6.9366 3.9871 1.4371 12 1 6.9092 4.1089 0.3544 13 8 7.6285 2.7800 1.7633 14 6 7.6632 5.1779 2.0657 15 8 8.9572 5.3122 1.4745 16 6 9.7371 6.3275 1.9236 17 6 11.0095 6.5129 1.3875 18 6 11.8003 7.5312 1.8339 19 6 11.3267 8.3965 2.8392 20 6 12.1384 9.4532 3.3066 21 1 13.2129 9.3884 3.2188 22 6 11.5511 10.5816 3.8886 23 7 10.2818 10.8334 3.6924 24 14 12.5783 11.7290 4.9458 25 1 13.6935 12.2823 4.1362 26 1 11.7274 12.8409 5.4405 27 1 13.1309 10.9763 6.1004 28 6 10.0412 8.1988 3.3795 29 6 9.2609 7.1793 2.9179 30 6 4.0999 2.8433 0.2339 31 8 3.9215 3.8192 -0.4630 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9562 -0.8899 39 1 3.7848 -0.1682 -1.4138 40 1 3.7232 1.4521 -2.1482 41 1 5.1964 0.9110 -1.3083 42 1 3.9435 -0.2609 1.3340 43 1 5.5347 3.7962 3.0617 44 1 4.9796 4.8386 1.7300 45 1 7.6912 2.6069 2.7127 46 1 7.7689 5.0141 3.1381 47 1 7.0881 6.0873 1.8919 48 1 11.3711 5.8488 0.6164 49 1 12.7867 7.6734 1.4176 50 1 9.8746 11.6160 4.0956 51 1 9.6726 8.8550 4.1540 52 1 8.2729 7.0292 3.3278 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051373764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:35 Heat of formation + Delta-G solvation = -143.222957 kcal Electronic energy + Delta-G solvation = -34236.768827 eV Core-core repulsion = 29587.084439 eV Total energy + Delta-G solvation = -4649.684388 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.69047 -40.67963 -39.78299 -39.11247 -38.14847 -37.59906 -36.43708 -35.21747 -34.56883 -32.16272 -31.62174 -31.51922 -30.87388 -28.11910 -27.84575 -26.54056 -25.36657 -24.02433 -23.43503 -22.78471 -22.10524 -21.56250 -21.39477 -19.28317 -19.16228 -18.68178 -18.04327 -17.93094 -17.54187 -17.15295 -16.90488 -16.71669 -16.35099 -16.15110 -16.01685 -15.73721 -15.55230 -15.33580 -15.26325 -15.09599 -14.63233 -14.36647 -14.21135 -13.90356 -13.81890 -13.58109 -13.51792 -13.28836 -13.21797 -13.16648 -12.80045 -12.77900 -12.74840 -12.45621 -12.36889 -12.27358 -12.16600 -11.88114 -11.73524 -11.64767 -11.55942 -11.51868 -11.20246 -11.09632 -10.87743 -10.75052 -10.46399 -9.58032 -8.92640 -8.60997 -6.23399 0.50210 0.93053 1.03555 1.04409 1.39498 1.49969 1.54397 1.88137 2.07147 2.22549 2.46460 2.71657 2.83071 3.25766 3.42692 3.62451 3.67725 3.69880 3.74615 3.78729 4.00734 4.13854 4.18294 4.26750 4.29081 4.32819 4.39367 4.44045 4.47331 4.50998 4.69176 4.70681 4.74507 4.83005 4.88517 4.89343 4.99385 5.00108 5.09790 5.14236 5.27071 5.34064 5.35929 5.46748 5.50658 5.64911 5.79999 5.95624 5.95755 6.05131 6.22273 6.26878 6.53969 6.60289 6.77413 6.94355 7.07496 7.08656 8.35963 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.001530 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.206521 B =18298.120829 C =18552.871501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.109 4.109 4 C 0.131 3.869 5 C -0.147 4.147 6 N -0.701 5.701 7 C 0.704 3.296 8 O -0.569 6.569 9 N -0.571 5.571 10 C 0.090 3.910 11 C 0.108 3.892 12 H 0.096 0.904 13 O -0.559 6.559 14 C 0.035 3.965 15 O -0.328 6.328 16 C -0.003 4.003 17 C -0.122 4.122 18 C -0.206 4.206 19 C 0.054 3.946 20 C -0.500 4.500 21 H 0.076 0.924 22 C 0.035 3.965 23 N -0.830 5.830 24 Si 0.981 3.019 25 H -0.260 1.260 26 H -0.268 1.268 27 H -0.261 1.261 28 C -0.154 4.154 29 C -0.174 4.174 30 C 0.522 3.478 31 O -0.489 6.489 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.450 0.550 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.386 0.614 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.287 0.713 51 H 0.108 0.892 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.885 -21.151 -6.038 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.147 4.147 4 C 0.040 3.960 5 C -0.204 4.204 6 N -0.366 5.366 7 C 0.405 3.595 8 O -0.445 6.445 9 N -0.316 5.316 10 C -0.032 4.032 11 C 0.048 3.952 12 H 0.114 0.886 13 O -0.366 6.366 14 C -0.042 4.042 15 O -0.244 6.244 16 C -0.047 4.047 17 C -0.140 4.140 18 C -0.226 4.226 19 C 0.052 3.948 20 C -0.530 4.530 21 H 0.094 0.906 22 C -0.179 4.179 23 N -0.457 5.457 24 Si 0.802 3.198 25 H -0.184 1.184 26 H -0.192 1.192 27 H -0.186 1.186 28 C -0.174 4.174 29 C -0.193 4.193 30 C 0.310 3.690 31 O -0.360 6.360 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.298 0.702 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.235 0.765 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.098 0.902 51 H 0.126 0.874 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.741 -20.709 -6.590 30.741 hybrid contribution 0.421 0.830 1.315 1.611 sum -21.320 -19.880 -5.275 29.624 Atomic orbital electron populations 1.21759 0.95113 1.02322 1.01932 1.21537 0.96480 0.94173 1.03494 1.21860 0.88255 1.00372 1.04246 1.21586 0.97798 0.86719 0.89854 1.22076 1.01388 1.04075 0.92903 1.45593 1.53842 1.12702 1.24505 1.15926 0.79513 0.80880 0.83214 1.90977 1.49571 1.79324 1.24629 1.46248 1.48458 1.11458 1.25425 1.22289 0.91857 0.88574 1.00471 1.22098 0.89240 0.83396 1.00506 0.88649 1.86577 1.78472 1.40837 1.30667 1.23314 0.83629 0.99145 0.98114 1.85849 1.27176 1.48645 1.62726 1.18705 0.92694 0.92488 1.00817 1.19880 0.92573 0.99730 1.01843 1.20791 1.00655 0.99987 1.01136 1.17968 0.93239 0.92792 0.90765 1.19697 0.94798 1.01734 1.36742 0.90618 1.26715 0.96306 0.99449 0.95416 1.69878 1.14031 1.26155 1.35646 0.85264 0.78736 0.77066 0.78707 1.18444 1.19245 1.18576 1.20918 0.96225 0.98259 1.01970 1.20822 1.00352 0.97988 1.00140 1.21445 0.76776 0.91560 0.79259 1.90805 1.57959 1.37895 1.49294 0.93249 0.92304 0.91814 0.89622 0.91236 0.91608 0.88617 0.87193 0.89168 0.92659 0.70221 0.86545 0.86207 0.76471 0.91115 0.90987 0.86614 0.87282 0.90198 0.87414 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 71.98 0.71 0.03 16 2 C -0.12 -0.42 5.52 30.59 0.17 -0.26 16 3 C -0.11 -0.81 4.54 30.59 0.14 -0.67 16 4 C 0.13 1.46 1.01 2.98 0.00 1.46 16 5 C -0.15 -1.19 8.72 71.98 0.63 -0.57 16 6 N -0.70 -8.33 5.41 -439.84 -2.38 -10.71 16 7 C 0.70 14.19 8.17 179.44 1.47 15.66 16 8 O -0.57 -14.99 17.13 -3.82 -0.07 -15.05 16 9 N -0.57 -11.50 2.53 -773.12 -1.96 -13.46 16 10 C 0.09 1.82 5.39 86.38 0.47 2.28 16 11 C 0.11 2.80 3.52 30.60 0.11 2.90 16 12 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 13 O -0.56 -15.90 12.47 -143.19 -1.79 -17.69 16 14 C 0.03 1.04 4.37 71.98 0.31 1.35 16 15 O -0.33 -13.33 10.09 -85.32 -0.86 -14.19 16 16 C 0.00 -0.15 6.71 22.79 0.15 0.00 16 17 C -0.12 -5.78 9.92 22.11 0.22 -5.56 16 18 C -0.21 -10.50 9.74 22.49 0.22 -10.28 16 19 C 0.05 3.01 5.57 -21.28 -0.12 2.89 16 20 C -0.50 -27.38 9.04 23.40 0.21 -27.17 16 21 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 22 C 0.04 1.79 5.13 85.23 0.44 2.23 16 23 N -0.83 -43.76 10.97 21.82 0.24 -43.52 16 24 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 28 C -0.15 -8.20 8.64 22.49 0.19 -8.01 16 29 C -0.17 -8.17 8.96 22.11 0.20 -7.97 16 30 C 0.52 9.99 6.98 87.94 0.61 10.60 16 31 O -0.49 -11.97 17.75 -2.89 -0.05 -12.02 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 34 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.09 6.75 -2.39 -0.02 0.07 16 36 H 0.07 0.20 7.04 -2.39 -0.02 0.19 16 37 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.28 6.82 -2.38 -0.02 0.26 16 40 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.45 3.07 8.12 -92.70 -0.75 2.32 16 43 H 0.12 2.08 7.86 -2.39 -0.02 2.07 16 44 H 0.12 2.14 8.00 -2.39 -0.02 2.12 16 45 H 0.39 9.47 8.98 -74.05 -0.67 8.80 16 46 H 0.07 1.97 7.65 -2.38 -0.02 1.95 16 47 H 0.07 2.06 7.65 -2.39 -0.02 2.04 16 48 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 49 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 50 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 51 H 0.11 5.92 6.17 -2.91 -0.02 5.90 16 52 H 0.12 4.84 6.27 -2.91 -0.02 4.83 16 Total: -1.00 -72.24 427.87 0.85 -71.39 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.45 Total: 35.71 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 6.13 Total: -21.06 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -4.10 Total: -67.69 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -2.76 Total: -58.95 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -72.24 0.85 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.831 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds