Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 C 1.53000 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.53579 * 302.83541 * 4 3 2 6 6 N 1.47318 * 110.73060 * 65.75034 * 4 3 2 7 7 C 1.34524 * 106.61568 * 118.36510 * 6 4 3 8 8 O 1.21541 * 123.77030 * 180.21051 * 7 6 4 9 9 N 1.33793 * 112.46172 * 0.38792 * 7 6 4 10 10 C 1.46495 * 124.17849 * 179.85829 * 9 7 6 11 11 C 1.52996 * 109.47430 * 269.70101 * 10 9 7 12 12 H 1.09001 * 109.47357 * 304.99909 * 11 10 9 13 13 O 1.42905 * 109.47046 * 64.99983 * 11 10 9 14 14 C 1.53005 * 109.47284 * 185.00056 * 11 10 9 15 15 O 1.42899 * 109.46868 * 175.00013 * 14 11 10 16 16 C 1.35678 * 116.99704 * 180.02562 * 15 14 11 17 17 C 1.39320 * 119.81709 * 359.72143 * 16 15 14 18 18 C 1.36437 * 120.18348 * 179.76126 * 17 16 15 19 19 C 1.40834 * 119.80868 * 0.51855 * 18 17 16 20 20 C 1.41216 * 120.17434 * 179.71809 * 19 18 17 21 21 H 1.07999 * 119.99930 * 204.56402 * 20 19 18 22 22 C 1.39887 * 120.00297 * 24.56730 * 20 19 18 23 23 N 1.30883 * 120.00242 * 17.91503 * 22 20 19 24 24 Si 1.86803 * 119.99969 * 197.92446 * 22 20 19 25 25 H 1.48491 * 109.47182 * 59.99571 * 24 22 20 26 26 H 1.48503 * 109.46796 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46991 * 299.99234 * 24 22 20 28 28 C 1.40828 * 119.64430 * 359.73285 * 19 18 17 29 29 C 1.36441 * 119.81239 * 0.02562 * 28 19 18 30 30 C 1.34765 * 111.64147 * 359.59583 * 9 7 6 31 31 O 1.21229 * 127.15455 * 180.19718 * 30 9 7 32 32 H 1.08997 * 109.47070 * 59.99767 * 1 2 3 33 33 H 1.08995 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46404 * 299.99790 * 1 2 3 35 35 H 1.09004 * 109.47104 * 240.00457 * 2 1 3 36 36 H 1.09005 * 109.47412 * 120.00254 * 2 1 3 37 37 H 1.09003 * 109.47209 * 60.00166 * 3 2 1 38 38 H 1.08997 * 109.47267 * 300.00112 * 3 2 1 39 39 H 1.09004 * 109.47070 * 297.86341 * 5 4 3 40 40 H 1.08994 * 109.47405 * 57.86964 * 5 4 3 41 41 H 1.09008 * 109.47017 * 177.86991 * 5 4 3 42 42 H 0.96995 * 126.68878 * 298.63109 * 6 4 3 43 43 H 1.09006 * 109.46918 * 149.69911 * 10 9 7 44 44 H 1.08999 * 109.47150 * 29.70190 * 10 9 7 45 45 H 0.96701 * 113.99903 * 60.00674 * 13 11 10 46 46 H 1.08994 * 109.47051 * 295.00182 * 14 11 10 47 47 H 1.09003 * 109.46985 * 54.99763 * 14 11 10 48 48 H 1.07998 * 119.90244 * 0.02562 * 17 16 15 49 49 H 1.07998 * 120.09131 * 180.24978 * 18 17 16 50 50 H 0.97002 * 120.00574 * 179.97438 * 23 22 20 51 51 H 1.08006 * 120.09155 * 179.97438 * 28 19 18 52 52 H 1.07994 * 119.90640 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1062 0.6658 1.2048 6 7 4.0920 0.8764 -1.2553 7 6 4.8012 1.8518 -1.8514 8 8 5.3690 1.7191 -2.9178 9 7 4.8149 2.9832 -1.1374 10 6 5.5120 4.2054 -1.5452 11 6 6.9392 4.1866 -0.9942 12 1 6.9099 4.0429 0.0859 13 8 7.6687 3.1161 -1.5975 14 6 7.6267 5.5157 -1.3134 15 8 8.9168 5.5441 -0.6994 16 6 9.6629 6.6620 -0.8854 17 6 9.1602 7.7107 -1.6525 18 6 9.9021 8.8402 -1.8404 19 6 11.1839 8.9396 -1.2654 20 6 11.9609 10.1026 -1.4598 21 1 13.0370 10.0520 -1.3840 22 6 11.3367 11.3203 -1.7505 23 7 10.0610 11.4771 -1.5037 24 14 12.3239 12.7225 -2.4913 25 1 12.8950 12.2923 -3.7928 26 1 11.4368 13.8943 -2.7036 27 1 13.4246 13.0954 -1.5667 28 6 11.6867 7.8727 -0.4958 29 6 10.9299 6.7521 -0.3135 30 6 4.1034 2.8614 0.0007 31 8 3.9272 3.7099 0.8484 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3632 0.5138 0.8901 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6767 1.9564 -0.8899 39 1 3.7835 1.1535 2.1247 40 1 3.7219 -0.3538 1.1800 41 1 5.1955 0.6445 1.1678 42 1 3.9487 -0.0229 -1.5893 43 1 4.9825 5.0738 -1.1531 44 1 5.5434 4.2599 -2.6334 45 1 7.7353 3.1790 -2.5602 46 1 7.7357 5.6183 -2.3930 47 1 7.0233 6.3383 -0.9294 48 1 8.1787 7.6311 -2.0961 49 1 9.5093 9.6539 -2.4319 50 1 9.6282 12.3216 -1.7049 51 1 12.6690 7.9410 -0.0519 52 1 11.3139 5.9333 0.2767 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051373765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -143.250488 kcal Electronic energy + Delta-G solvation = -34217.088828 eV Core-core repulsion = 29567.403246 eV Total energy + Delta-G solvation = -4649.685582 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.68994 -40.68031 -39.78901 -39.11030 -38.15052 -37.60428 -36.45660 -35.21693 -34.61296 -32.14826 -31.57397 -31.51004 -30.87079 -28.12307 -27.85581 -26.54166 -25.39394 -24.01504 -23.44850 -22.79152 -22.10719 -21.49193 -21.44936 -19.28385 -19.16257 -18.67348 -18.03950 -17.92657 -17.55140 -17.13951 -16.90912 -16.75385 -16.35859 -16.10552 -16.02504 -15.73999 -15.54363 -15.33739 -15.26708 -15.11545 -14.65316 -14.41737 -14.21345 -13.87995 -13.81619 -13.57291 -13.52848 -13.28275 -13.19571 -13.14424 -12.78002 -12.76108 -12.74936 -12.45675 -12.40407 -12.27098 -12.16813 -11.88199 -11.73881 -11.64622 -11.56365 -11.50237 -11.20387 -11.09025 -10.87355 -10.74670 -10.46943 -9.58000 -8.92754 -8.60810 -6.23396 0.49710 0.93034 1.03621 1.04287 1.39538 1.50090 1.54396 1.87724 2.06829 2.22606 2.46302 2.71710 2.82613 3.25547 3.43360 3.62532 3.67899 3.70049 3.74628 3.77516 4.00400 4.13992 4.18387 4.26814 4.28973 4.32826 4.39613 4.43943 4.46587 4.50568 4.68397 4.71425 4.73691 4.83301 4.88771 4.89335 4.99222 5.00073 5.09833 5.14217 5.27427 5.34919 5.36027 5.47209 5.50708 5.64914 5.80223 5.95330 5.95730 6.05136 6.22352 6.26652 6.54187 6.62139 6.77478 6.94418 7.07512 7.08661 8.36015 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.001536 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.971301 B =18229.131911 C =18528.992107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.131 3.869 5 C -0.149 4.149 6 N -0.701 5.701 7 C 0.703 3.297 8 O -0.568 6.568 9 N -0.572 5.572 10 C 0.090 3.910 11 C 0.109 3.891 12 H 0.094 0.906 13 O -0.559 6.559 14 C 0.034 3.966 15 O -0.328 6.328 16 C -0.003 4.003 17 C -0.174 4.174 18 C -0.154 4.154 19 C 0.054 3.946 20 C -0.500 4.500 21 H 0.076 0.924 22 C 0.035 3.965 23 N -0.830 5.830 24 Si 0.982 3.018 25 H -0.261 1.261 26 H -0.268 1.268 27 H -0.260 1.260 28 C -0.206 4.206 29 C -0.122 4.122 30 C 0.521 3.479 31 O -0.489 6.489 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.056 0.944 42 H 0.450 0.550 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.387 0.613 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.122 0.878 49 H 0.108 0.892 50 H 0.287 0.713 51 H 0.109 0.891 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.440 -22.113 1.377 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.148 4.148 4 C 0.040 3.960 5 C -0.207 4.207 6 N -0.366 5.366 7 C 0.404 3.596 8 O -0.444 6.444 9 N -0.317 5.317 10 C -0.031 4.031 11 C 0.048 3.952 12 H 0.112 0.888 13 O -0.366 6.366 14 C -0.042 4.042 15 O -0.244 6.244 16 C -0.047 4.047 17 C -0.193 4.193 18 C -0.173 4.173 19 C 0.052 3.948 20 C -0.530 4.530 21 H 0.094 0.906 22 C -0.179 4.179 23 N -0.457 5.457 24 Si 0.802 3.198 25 H -0.186 1.186 26 H -0.192 1.192 27 H -0.184 1.184 28 C -0.226 4.226 29 C -0.140 4.140 30 C 0.309 3.691 31 O -0.359 6.359 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.298 0.702 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.236 0.764 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.139 0.861 49 H 0.126 0.874 50 H 0.098 0.902 51 H 0.127 0.873 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.292 -21.829 1.981 30.558 hybrid contribution 0.386 1.100 -1.062 1.577 sum -20.906 -20.729 0.920 29.456 Atomic orbital electron populations 1.21763 0.95165 1.02328 1.01909 1.21576 0.96428 0.94112 1.03610 1.21858 0.88215 1.00484 1.04214 1.21581 0.97762 0.88999 0.87610 1.22118 1.01520 1.02208 0.94819 1.45571 1.53878 1.15030 1.22161 1.15931 0.79559 0.80894 0.83224 1.90982 1.49483 1.81966 1.21949 1.46270 1.48485 1.14348 1.22567 1.22298 0.91843 0.85650 1.03356 1.22087 0.89045 0.85333 0.98726 0.88806 1.86585 1.76408 1.47090 1.26479 1.23317 0.83867 0.98471 0.98553 1.85850 1.28650 1.37240 1.72666 1.18707 0.93274 0.87612 1.05109 1.20826 1.00532 0.94769 1.03188 1.20918 0.96581 0.97019 1.02822 1.17966 0.93142 0.93184 0.90491 1.19698 0.94882 0.93357 1.45034 0.90619 1.26714 0.96056 1.02293 0.92832 1.69880 1.12811 1.27243 1.35787 0.85262 0.78761 0.76228 0.79506 1.18576 1.19248 1.18444 1.20790 1.00962 0.95890 1.04923 1.19878 0.92849 0.98639 1.02676 1.21453 0.76832 0.90798 0.80016 1.90807 1.58032 1.47766 1.39329 0.93141 0.91783 0.92472 0.90985 0.89644 0.89000 0.91225 0.89376 0.87022 0.92492 0.70241 0.86274 0.86419 0.76388 0.90988 0.91079 0.86062 0.87385 0.90199 0.87292 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 71.98 0.71 0.03 16 2 C -0.12 -0.42 5.43 30.59 0.17 -0.25 16 3 C -0.11 -0.82 4.58 30.59 0.14 -0.68 16 4 C 0.13 1.47 1.01 2.98 0.00 1.48 16 5 C -0.15 -1.23 8.61 71.98 0.62 -0.61 16 6 N -0.70 -8.36 5.62 -439.81 -2.47 -10.84 16 7 C 0.70 14.23 8.32 179.44 1.49 15.73 16 8 O -0.57 -15.05 17.27 -3.84 -0.07 -15.11 16 9 N -0.57 -11.54 2.57 -773.14 -1.99 -13.53 16 10 C 0.09 1.82 5.35 86.38 0.46 2.29 16 11 C 0.11 2.81 3.49 30.59 0.11 2.92 16 12 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 13 O -0.56 -15.85 12.76 -144.15 -1.84 -17.69 16 14 C 0.03 1.04 4.37 71.98 0.31 1.35 16 15 O -0.33 -13.34 10.09 -85.32 -0.86 -14.20 16 16 C 0.00 -0.15 6.71 22.79 0.15 0.00 16 17 C -0.17 -8.16 8.96 22.11 0.20 -7.97 16 18 C -0.15 -8.18 8.64 22.48 0.19 -7.98 16 19 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 20 C -0.50 -27.37 9.04 23.40 0.21 -27.16 16 21 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 22 C 0.04 1.78 5.13 85.23 0.44 2.22 16 23 N -0.83 -43.75 10.96 21.82 0.24 -43.51 16 24 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 28 C -0.21 -10.49 9.74 22.48 0.22 -10.27 16 29 C -0.12 -5.79 9.92 22.11 0.22 -5.57 16 30 C 0.52 10.02 6.98 87.94 0.61 10.63 16 31 O -0.49 -12.04 17.76 -2.87 -0.05 -12.09 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 0.16 7.41 -2.38 -0.02 0.14 16 36 H 0.09 0.11 6.42 -2.38 -0.02 0.09 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 0.29 6.37 -2.39 -0.02 0.27 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.45 3.07 8.41 -92.71 -0.78 2.29 16 43 H 0.12 2.14 8.00 -2.38 -0.02 2.12 16 44 H 0.12 2.09 7.85 -2.39 -0.02 2.07 16 45 H 0.39 9.21 9.05 -74.06 -0.67 8.54 16 46 H 0.07 1.98 7.64 -2.39 -0.02 1.97 16 47 H 0.07 2.04 7.66 -2.39 -0.02 2.02 16 48 H 0.12 4.84 6.27 -2.91 -0.02 4.82 16 49 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 50 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 51 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 52 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -72.50 428.42 0.66 -71.85 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.48 Total: 35.52 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 6.15 Total: -20.97 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -4.22 Total: -67.88 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -2.82 Total: -59.09 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -72.50 0.66 -71.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.405 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds