Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 C 1.52998 * 109.47179 * 179.97438 * 3 2 1 5 5 C 1.53003 * 110.53146 * 66.38184 * 4 3 2 6 6 N 1.47305 * 110.60079 * 303.55111 * 4 3 2 7 7 C 1.34530 * 106.61791 * 241.47278 * 6 4 3 8 8 O 1.21543 * 123.77273 * 180.02562 * 7 6 4 9 9 N 1.33786 * 112.45903 * 359.97438 * 7 6 4 10 10 C 1.46504 * 124.17822 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47346 * 89.97507 * 10 9 7 12 12 H 1.08992 * 109.46854 * 305.00112 * 11 10 9 13 13 O 1.42901 * 109.47180 * 64.99726 * 11 10 9 14 14 C 1.53002 * 109.47094 * 184.99809 * 11 10 9 15 15 O 1.42894 * 109.46777 * 174.99938 * 14 11 10 16 16 C 1.35680 * 116.99638 * 180.02562 * 15 14 11 17 17 C 1.39311 * 119.81950 * 359.71880 * 16 15 14 18 18 C 1.36440 * 120.18411 * 179.76163 * 17 16 15 19 19 C 1.40835 * 119.81091 * 0.51622 * 18 17 16 20 20 C 1.41212 * 120.17548 * 179.71900 * 19 18 17 21 21 H 1.07996 * 120.00283 * 24.57171 * 20 19 18 22 22 C 1.39892 * 119.99705 * 204.57337 * 20 19 18 23 23 N 1.30882 * 120.00135 * 17.93246 * 22 20 19 24 24 Si 1.86805 * 119.99999 * 197.93466 * 22 20 19 25 25 H 1.48502 * 109.47079 * 89.99912 * 24 22 20 26 26 H 1.48498 * 109.47159 * 209.99706 * 24 22 20 27 27 H 1.48500 * 109.46801 * 330.00215 * 24 22 20 28 28 C 1.40833 * 119.64242 * 359.74040 * 19 18 17 29 29 C 1.36444 * 119.81051 * 0.02562 * 28 19 18 30 30 C 1.34766 * 111.64393 * 0.02562 * 9 7 6 31 31 O 1.21238 * 127.15833 * 180.02562 * 30 9 7 32 32 H 1.08997 * 109.47358 * 59.99538 * 1 2 3 33 33 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47087 * 299.99475 * 1 2 3 35 35 H 1.09009 * 109.46765 * 240.00138 * 2 1 3 36 36 H 1.08997 * 109.47358 * 120.00462 * 2 1 3 37 37 H 1.08997 * 109.47353 * 300.00465 * 3 2 1 38 38 H 1.09009 * 109.47160 * 60.00380 * 3 2 1 39 39 H 1.08996 * 109.47531 * 60.00000 * 5 4 3 40 40 H 1.09006 * 109.46931 * 180.02562 * 5 4 3 41 41 H 1.08996 * 109.46770 * 299.99591 * 5 4 3 42 42 H 0.96993 * 126.69496 * 61.50781 * 6 4 3 43 43 H 1.09002 * 109.46692 * 209.97076 * 10 9 7 44 44 H 1.09001 * 109.47119 * 329.97186 * 10 9 7 45 45 H 0.96700 * 113.99680 * 60.00079 * 13 11 10 46 46 H 1.09001 * 109.47095 * 294.99967 * 14 11 10 47 47 H 1.09003 * 109.46957 * 54.99691 * 14 11 10 48 48 H 1.07997 * 119.90347 * 0.02963 * 17 16 15 49 49 H 1.07995 * 120.09270 * 180.25885 * 18 17 16 50 50 H 0.96999 * 119.99894 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.09235 * 179.97438 * 28 19 18 52 52 H 1.07999 * 119.90645 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1071 0.8682 -1.3119 6 7 4.0878 0.6805 1.1501 7 6 4.7991 1.5452 1.8959 8 8 5.3679 1.2403 2.9257 9 7 4.8114 2.7782 1.3766 10 6 5.5082 3.9177 1.9783 11 6 6.9374 3.9857 1.4364 12 1 7.4363 3.0318 1.6070 13 8 6.9028 4.2610 0.0346 14 6 7.7033 5.0977 2.1558 15 8 9.0686 5.0854 1.7343 16 6 9.8908 6.0154 2.2820 17 6 9.3863 6.9278 3.2060 18 6 10.2075 7.8631 3.7650 19 6 11.5661 7.9114 3.3973 20 6 12.4216 8.8800 3.9667 21 1 12.1859 9.3098 4.9290 22 6 13.5743 9.2829 3.2841 23 7 13.6905 9.0495 2.0015 24 14 14.9477 10.1539 4.2032 25 1 15.9085 9.1492 4.7255 26 1 15.6522 11.0791 3.2797 27 1 14.3741 10.9255 5.3349 28 6 12.0668 6.9888 2.4584 29 6 11.2333 6.0567 1.9124 30 6 4.1035 2.8423 0.2316 31 8 3.9301 3.8168 -0.4685 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8933 -0.5139 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6766 1.9563 -0.8899 38 1 1.6767 1.9563 0.8901 39 1 3.7538 1.4749 -2.1455 40 1 5.1970 0.8759 -1.2927 41 1 3.7534 -0.1558 -1.4321 42 1 3.9443 -0.2611 1.3333 43 1 4.9810 4.8387 1.7292 44 1 5.5356 3.7963 3.0612 45 1 6.4718 5.0967 -0.1915 46 1 7.2568 6.0621 1.9133 47 1 7.6540 4.9351 3.2325 48 1 8.3433 6.8919 3.4838 49 1 9.8158 8.5670 4.4843 50 1 14.4900 9.3285 1.5283 51 1 13.1074 7.0195 2.1709 52 1 11.6158 5.3482 1.1926 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051373767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -121.144379 kcal Electronic energy + Delta-G solvation = -34158.599211 eV Core-core repulsion = 29509.872222 eV Total energy + Delta-G solvation = -4648.726989 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.94709 -39.10496 -38.92518 -37.97172 -37.16427 -36.13637 -35.59389 -34.05769 -33.31108 -31.27954 -30.85188 -29.67793 -29.00710 -27.51786 -26.93871 -24.86038 -24.49948 -23.21334 -22.42256 -21.06239 -20.84879 -20.70313 -20.48539 -18.38317 -17.39740 -17.36999 -17.08873 -16.77826 -16.39139 -16.12167 -16.04285 -15.74967 -15.42205 -15.22592 -14.78073 -14.54731 -14.47833 -14.16055 -14.02074 -13.92375 -13.69759 -13.44221 -13.07328 -12.87726 -12.81205 -12.44954 -12.35188 -12.30107 -12.14461 -11.93408 -11.84284 -11.80215 -11.42689 -11.33977 -11.25237 -11.13309 -11.09658 -10.88903 -10.64213 -10.51093 -10.34776 -9.97113 -9.94283 -9.82275 -9.68707 -9.32774 -9.01841 -7.63430 -7.02782 -6.71354 -4.24779 1.31135 1.80249 2.65512 2.71065 2.78582 2.96075 3.09587 3.12879 3.22323 3.46286 3.82210 3.90688 3.96301 4.11619 4.25437 4.44159 4.47985 4.58847 4.62499 4.78161 4.80506 4.89098 4.98876 5.02763 5.06978 5.12828 5.16226 5.19407 5.22485 5.32147 5.41031 5.44853 5.53053 5.57536 5.62181 5.67775 5.69516 5.91482 6.06417 6.23317 6.37842 6.69671 6.72971 6.98545 7.05694 7.11829 7.19334 7.46277 7.55948 7.58993 7.78165 7.79608 8.01548 8.21264 8.45234 8.65888 8.90841 8.99407 10.23102 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.030836 B = 0.001460 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.803878 B =19173.582978 C =19357.305063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.121 3.879 5 C -0.148 4.148 6 N -0.720 5.720 7 C 0.702 3.298 8 O -0.539 6.539 9 N -0.569 5.569 10 C 0.089 3.911 11 C 0.095 3.905 12 H 0.112 0.888 13 O -0.545 6.545 14 C 0.042 3.958 15 O -0.316 6.316 16 C -0.010 4.010 17 C -0.167 4.167 18 C -0.198 4.198 19 C 0.088 3.912 20 C -0.464 4.464 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.798 5.798 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.133 4.133 29 C -0.118 4.118 30 C 0.535 3.465 31 O -0.457 6.457 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.438 0.562 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.376 0.624 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.280 0.720 51 H 0.126 0.874 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.376 -16.952 -5.846 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.152 4.152 4 C 0.031 3.969 5 C -0.206 4.206 6 N -0.385 5.385 7 C 0.403 3.597 8 O -0.412 6.412 9 N -0.314 5.314 10 C -0.033 4.033 11 C 0.035 3.965 12 H 0.130 0.870 13 O -0.350 6.350 14 C -0.035 4.035 15 O -0.231 6.231 16 C -0.053 4.053 17 C -0.186 4.186 18 C -0.218 4.218 19 C 0.086 3.914 20 C -0.494 4.494 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.424 5.424 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.153 4.153 29 C -0.137 4.137 30 C 0.321 3.679 31 O -0.325 6.325 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.283 0.717 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.224 0.776 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.143 0.857 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.597 -17.124 -6.007 29.768 hybrid contribution 0.191 0.782 0.740 1.094 sum -23.406 -16.342 -5.267 29.028 Atomic orbital electron populations 1.21754 0.95050 1.02033 1.02168 1.21538 0.96609 0.95437 1.02536 1.21840 0.90019 0.99034 1.04279 1.21510 0.96699 0.89249 0.89466 1.22026 1.02490 1.02254 0.93838 1.45674 1.55073 1.12472 1.25274 1.15891 0.79696 0.80768 0.83353 1.91049 1.48140 1.78939 1.23100 1.46188 1.48916 1.11220 1.25114 1.22349 0.93285 0.87475 1.00206 1.22266 0.92322 0.99965 0.81966 0.87025 1.86630 1.82372 1.44462 1.21569 1.22972 0.83954 0.97887 0.98709 1.85883 1.17629 1.53882 1.65726 1.18616 0.90632 0.94658 1.01398 1.20391 0.98146 0.99044 1.01051 1.20553 0.93857 1.01587 1.05786 1.17603 0.90834 0.91590 0.91409 1.19470 1.05047 1.20052 1.04807 0.90534 1.25878 0.98964 0.94942 0.94391 1.69837 1.27195 1.37485 1.07927 0.86327 0.80754 0.79461 0.80238 1.19321 1.20384 1.18713 1.20981 0.99372 0.94519 1.00392 1.19838 0.90703 1.00913 1.02222 1.20684 0.77128 0.90287 0.79772 1.90788 1.56843 1.36661 1.48206 0.92393 0.92377 0.92597 0.91079 0.91717 0.89106 0.90865 0.89682 0.91010 0.90165 0.71713 0.87938 0.87158 0.77625 0.92520 0.91971 0.88898 0.88737 0.90912 0.85659 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 37.16 0.37 -0.11 16 2 C -0.12 -0.38 5.52 -26.74 -0.15 -0.52 16 3 C -0.11 -0.52 4.55 -26.74 -0.12 -0.64 16 4 C 0.12 0.77 1.01 -132.10 -0.13 0.64 16 5 C -0.15 -0.77 8.76 37.16 0.33 -0.45 16 6 N -0.72 -4.89 5.41 -52.94 -0.29 -5.18 16 7 C 0.70 7.52 8.62 -88.02 -0.76 6.76 16 8 O -0.54 -7.65 17.48 5.33 0.09 -7.56 16 9 N -0.57 -5.87 2.57 -120.72 -0.31 -6.18 16 10 C 0.09 0.91 5.35 -4.04 -0.02 0.89 16 11 C 0.10 1.25 3.49 -26.73 -0.09 1.16 16 12 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 13 O -0.55 -7.68 12.96 -40.09 -0.52 -8.20 16 14 C 0.04 0.65 4.36 37.16 0.16 0.81 16 15 O -0.32 -6.56 10.09 -23.60 -0.24 -6.80 16 16 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 17 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 18 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 19 C 0.09 2.37 5.57 -106.80 -0.60 1.78 16 20 C -0.46 -12.41 9.04 -37.83 -0.34 -12.75 16 21 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.80 -20.87 10.96 55.54 0.61 -20.26 16 24 Si 0.91 18.85 29.60 -169.99 -5.03 13.81 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 29 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 30 C 0.54 5.18 6.68 -10.56 -0.07 5.11 16 31 O -0.46 -5.35 17.76 5.59 0.10 -5.25 16 32 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.16 6.70 -51.92 -0.35 -0.19 16 36 H 0.06 0.18 7.04 -51.93 -0.37 -0.18 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.38 8.13 -51.92 -0.42 -0.04 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.24 6.72 -51.93 -0.35 -0.11 16 42 H 0.44 1.98 8.12 -40.82 -0.33 1.65 16 43 H 0.10 0.89 8.00 -51.93 -0.42 0.47 16 44 H 0.11 1.06 7.86 -51.93 -0.41 0.65 16 45 H 0.38 4.34 9.05 45.56 0.41 4.75 16 46 H 0.06 0.81 7.64 -51.93 -0.40 0.41 16 47 H 0.06 0.90 7.66 -51.93 -0.40 0.50 16 48 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 49 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 50 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 51 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 52 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 428.79 15.07 6.46 6.46 Total: -1.00 -33.27 428.79 -9.40 -42.67 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.03 Total: 9.10 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.25 Total: -12.62 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.01 Total: -31.62 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.57 Total: -27.81 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -33.27 -9.40 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.472 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds