Wall clock time and date at job start Tue Mar 31 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 C 1.52998 * 109.47179 * 179.97438 * 3 2 1 5 5 C 1.53003 * 110.53146 * 66.38184 * 4 3 2 6 6 N 1.47305 * 110.60079 * 303.55111 * 4 3 2 7 7 C 1.34530 * 106.61791 * 241.47278 * 6 4 3 8 8 O 1.21543 * 123.77273 * 180.02562 * 7 6 4 9 9 N 1.33786 * 112.45903 * 359.97438 * 7 6 4 10 10 C 1.46504 * 124.17822 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47346 * 89.97507 * 10 9 7 12 12 H 1.08992 * 109.46854 * 305.00112 * 11 10 9 13 13 O 1.42901 * 109.47180 * 64.99726 * 11 10 9 14 14 C 1.53002 * 109.47094 * 184.99809 * 11 10 9 15 15 O 1.42894 * 109.46777 * 174.99938 * 14 11 10 16 16 C 1.35680 * 116.99638 * 180.02562 * 15 14 11 17 17 C 1.39311 * 119.81950 * 359.71880 * 16 15 14 18 18 C 1.36440 * 120.18411 * 179.76163 * 17 16 15 19 19 C 1.40835 * 119.81091 * 0.51622 * 18 17 16 20 20 C 1.41212 * 120.17548 * 179.71900 * 19 18 17 21 21 H 1.07996 * 120.00283 * 24.57171 * 20 19 18 22 22 C 1.39892 * 119.99705 * 204.57337 * 20 19 18 23 23 N 1.30882 * 120.00135 * 17.93246 * 22 20 19 24 24 Si 1.86805 * 119.99999 * 197.93466 * 22 20 19 25 25 H 1.48502 * 109.47079 * 89.99912 * 24 22 20 26 26 H 1.48498 * 109.47159 * 209.99706 * 24 22 20 27 27 H 1.48500 * 109.46801 * 330.00215 * 24 22 20 28 28 C 1.40833 * 119.64242 * 359.74040 * 19 18 17 29 29 C 1.36444 * 119.81051 * 0.02562 * 28 19 18 30 30 C 1.34766 * 111.64393 * 0.02562 * 9 7 6 31 31 O 1.21238 * 127.15833 * 180.02562 * 30 9 7 32 32 H 1.08997 * 109.47358 * 59.99538 * 1 2 3 33 33 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47087 * 299.99475 * 1 2 3 35 35 H 1.09009 * 109.46765 * 240.00138 * 2 1 3 36 36 H 1.08997 * 109.47358 * 120.00462 * 2 1 3 37 37 H 1.08997 * 109.47353 * 300.00465 * 3 2 1 38 38 H 1.09009 * 109.47160 * 60.00380 * 3 2 1 39 39 H 1.08996 * 109.47531 * 60.00000 * 5 4 3 40 40 H 1.09006 * 109.46931 * 180.02562 * 5 4 3 41 41 H 1.08996 * 109.46770 * 299.99591 * 5 4 3 42 42 H 0.96993 * 126.69496 * 61.50781 * 6 4 3 43 43 H 1.09002 * 109.46692 * 209.97076 * 10 9 7 44 44 H 1.09001 * 109.47119 * 329.97186 * 10 9 7 45 45 H 0.96700 * 113.99680 * 60.00079 * 13 11 10 46 46 H 1.09001 * 109.47095 * 294.99967 * 14 11 10 47 47 H 1.09003 * 109.46957 * 54.99691 * 14 11 10 48 48 H 1.07997 * 119.90347 * 0.02963 * 17 16 15 49 49 H 1.07995 * 120.09270 * 180.25885 * 18 17 16 50 50 H 0.96999 * 119.99894 * 180.02562 * 23 22 20 51 51 H 1.07996 * 120.09235 * 179.97438 * 28 19 18 52 52 H 1.07999 * 119.90645 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1071 0.8682 -1.3119 6 7 4.0878 0.6805 1.1501 7 6 4.7991 1.5452 1.8959 8 8 5.3679 1.2403 2.9257 9 7 4.8114 2.7782 1.3766 10 6 5.5082 3.9177 1.9783 11 6 6.9374 3.9857 1.4364 12 1 7.4363 3.0318 1.6070 13 8 6.9028 4.2610 0.0346 14 6 7.7033 5.0977 2.1558 15 8 9.0686 5.0854 1.7343 16 6 9.8908 6.0154 2.2820 17 6 9.3863 6.9278 3.2060 18 6 10.2075 7.8631 3.7650 19 6 11.5661 7.9114 3.3973 20 6 12.4216 8.8800 3.9667 21 1 12.1859 9.3098 4.9290 22 6 13.5743 9.2829 3.2841 23 7 13.6905 9.0495 2.0015 24 14 14.9477 10.1539 4.2032 25 1 15.9085 9.1492 4.7255 26 1 15.6522 11.0791 3.2797 27 1 14.3741 10.9255 5.3349 28 6 12.0668 6.9888 2.4584 29 6 11.2333 6.0567 1.9124 30 6 4.1035 2.8423 0.2316 31 8 3.9301 3.8168 -0.4685 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.8933 -0.5139 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6766 1.9563 -0.8899 38 1 1.6767 1.9563 0.8901 39 1 3.7538 1.4749 -2.1455 40 1 5.1970 0.8759 -1.2927 41 1 3.7534 -0.1558 -1.4321 42 1 3.9443 -0.2611 1.3333 43 1 4.9810 4.8387 1.7292 44 1 5.5356 3.7963 3.0612 45 1 6.4718 5.0967 -0.1915 46 1 7.2568 6.0621 1.9133 47 1 7.6540 4.9351 3.2325 48 1 8.3433 6.8919 3.4838 49 1 9.8158 8.5670 4.4843 50 1 14.4900 9.3285 1.5283 51 1 13.1074 7.0195 2.1709 52 1 11.6158 5.3482 1.1926 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051373767.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:44 Heat of formation + Delta-G solvation = -143.669023 kcal Electronic energy + Delta-G solvation = -34159.575953 eV Core-core repulsion = 29509.872222 eV Total energy + Delta-G solvation = -4649.703731 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.69122 -40.68123 -39.76568 -39.12487 -38.15100 -37.62357 -36.43373 -35.19328 -34.60191 -32.25675 -31.66655 -31.37881 -30.86224 -28.11923 -27.84064 -26.54347 -25.35258 -24.15315 -23.32380 -22.56640 -22.31546 -21.56396 -21.41925 -19.28277 -19.19744 -18.69190 -18.05119 -17.85333 -17.42009 -17.16969 -17.04248 -16.69658 -16.35565 -16.15923 -16.00916 -15.73543 -15.51977 -15.36938 -15.26421 -15.07989 -14.66910 -14.35790 -14.09675 -13.96101 -13.89146 -13.56617 -13.52690 -13.31242 -13.20082 -13.03696 -12.81297 -12.78836 -12.68174 -12.46547 -12.36276 -12.29902 -12.17399 -11.91287 -11.76841 -11.62981 -11.57966 -11.51652 -11.17594 -11.06613 -10.89596 -10.77098 -10.47441 -9.57068 -8.94036 -8.60125 -6.23567 0.54406 0.93903 1.01964 1.04559 1.39637 1.52514 1.52883 1.83766 2.07719 2.22576 2.47045 2.72116 2.83973 3.25120 3.44426 3.64295 3.67835 3.70294 3.76033 3.79234 4.02343 4.14199 4.18497 4.26331 4.30730 4.32796 4.37163 4.40883 4.49523 4.54925 4.70283 4.71350 4.75142 4.82019 4.87644 4.89543 4.99987 5.05936 5.10572 5.20790 5.27452 5.27594 5.34474 5.46947 5.57291 5.63371 5.76309 5.87236 5.93889 6.05106 6.25262 6.32036 6.54872 6.61745 6.79376 6.94477 7.02919 7.08644 8.36565 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.030836 B = 0.001460 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.803878 B =19173.582978 C =19357.305063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.108 4.108 4 C 0.128 3.872 5 C -0.146 4.146 6 N -0.700 5.700 7 C 0.698 3.302 8 O -0.579 6.579 9 N -0.573 5.573 10 C 0.092 3.908 11 C 0.107 3.893 12 H 0.091 0.909 13 O -0.561 6.561 14 C 0.034 3.966 15 O -0.331 6.331 16 C -0.002 4.002 17 C -0.164 4.164 18 C -0.207 4.207 19 C 0.054 3.946 20 C -0.499 4.499 21 H 0.077 0.923 22 C 0.034 3.966 23 N -0.831 5.831 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.153 4.153 29 C -0.134 4.134 30 C 0.528 3.472 31 O -0.479 6.479 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.450 0.550 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.387 0.613 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.132 0.868 49 H 0.107 0.893 50 H 0.287 0.713 51 H 0.109 0.891 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.375 -17.662 -5.931 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.146 4.146 4 C 0.038 3.962 5 C -0.204 4.204 6 N -0.365 5.365 7 C 0.398 3.602 8 O -0.455 6.455 9 N -0.318 5.318 10 C -0.030 4.030 11 C 0.046 3.954 12 H 0.109 0.891 13 O -0.368 6.368 14 C -0.043 4.043 15 O -0.247 6.247 16 C -0.045 4.045 17 C -0.182 4.182 18 C -0.226 4.226 19 C 0.052 3.948 20 C -0.529 4.529 21 H 0.095 0.905 22 C -0.180 4.180 23 N -0.458 5.458 24 Si 0.803 3.197 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.181 1.181 28 C -0.172 4.172 29 C -0.153 4.153 30 C 0.316 3.684 31 O -0.349 6.349 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.298 0.702 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.236 0.764 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.150 0.850 49 H 0.126 0.874 50 H 0.098 0.902 51 H 0.127 0.873 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.651 -17.868 -6.122 31.855 hybrid contribution 0.637 0.901 0.671 1.292 sum -25.014 -16.967 -5.451 30.713 Atomic orbital electron populations 1.21757 0.95066 1.02305 1.01970 1.21544 0.96527 0.94285 1.03428 1.21846 0.88179 1.00291 1.04303 1.21623 0.97844 0.87078 0.89622 1.22064 1.01362 1.03968 0.92983 1.45624 1.53636 1.12698 1.24548 1.16058 0.79737 0.81193 0.83170 1.91022 1.50015 1.79574 1.24921 1.46259 1.48856 1.11206 1.25452 1.22299 0.91597 0.88552 1.00537 1.22104 0.93626 0.98089 0.81553 0.89070 1.86602 1.82754 1.45344 1.22111 1.23344 0.81322 0.99726 0.99880 1.85869 1.20015 1.52999 1.65798 1.18686 0.90565 0.94656 1.00638 1.20716 0.99817 0.97731 0.99940 1.20813 0.93377 1.02363 1.06079 1.17969 0.92229 0.92258 0.92319 1.19726 1.06719 1.21123 1.05305 0.90490 1.26745 1.00875 0.95418 0.94993 1.69895 1.28163 1.38421 1.09352 0.85199 0.77237 0.78319 0.78909 1.18844 1.19363 1.18104 1.20889 0.99044 0.95685 1.01599 1.19996 0.91776 1.00920 1.02589 1.21253 0.76644 0.91376 0.79108 1.90773 1.57649 1.37760 1.48677 0.92247 0.91883 0.93202 0.89687 0.91324 0.88513 0.91522 0.89221 0.92741 0.87329 0.70240 0.85980 0.86381 0.76382 0.90716 0.90607 0.85016 0.87444 0.90215 0.87292 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 71.98 0.71 0.08 16 2 C -0.12 -0.40 5.52 30.59 0.17 -0.23 16 3 C -0.11 -0.75 4.55 30.59 0.14 -0.61 16 4 C 0.13 1.39 1.01 2.99 0.00 1.39 16 5 C -0.15 -1.20 8.76 71.98 0.63 -0.57 16 6 N -0.70 -8.35 5.41 -439.82 -2.38 -10.73 16 7 C 0.70 14.33 8.62 179.44 1.55 15.88 16 8 O -0.58 -16.26 17.48 -3.85 -0.07 -16.33 16 9 N -0.57 -11.22 2.57 -773.10 -1.99 -13.21 16 10 C 0.09 1.76 5.35 86.38 0.46 2.22 16 11 C 0.11 2.70 3.49 30.60 0.11 2.81 16 12 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 13 O -0.56 -15.33 12.96 -144.33 -1.87 -17.21 16 14 C 0.03 0.97 4.36 71.98 0.31 1.29 16 15 O -0.33 -13.48 10.09 -85.33 -0.86 -14.34 16 16 C 0.00 -0.08 6.71 22.79 0.15 0.08 16 17 C -0.16 -7.19 8.96 22.11 0.20 -6.99 16 18 C -0.21 -10.19 9.74 22.49 0.22 -9.97 16 19 C 0.05 3.01 5.57 -21.28 -0.12 2.89 16 20 C -0.50 -27.33 9.04 23.40 0.21 -27.12 16 21 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 22 C 0.03 1.73 5.13 85.24 0.44 2.16 16 23 N -0.83 -44.59 10.96 21.82 0.24 -44.35 16 24 Si 0.98 38.89 29.60 68.60 2.03 40.92 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 28 C -0.15 -8.39 8.64 22.49 0.19 -8.19 16 29 C -0.13 -6.78 9.92 22.11 0.22 -6.56 16 30 C 0.53 9.56 6.68 87.94 0.59 10.15 16 31 O -0.48 -10.64 17.76 -2.90 -0.05 -10.69 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.08 0.08 6.70 -2.38 -0.02 0.06 16 36 H 0.07 0.20 7.04 -2.39 -0.02 0.18 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.58 8.13 -2.38 -0.02 0.56 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.11 0.28 6.72 -2.39 -0.02 0.27 16 42 H 0.45 3.12 8.12 -92.71 -0.75 2.37 16 43 H 0.12 1.85 8.00 -2.39 -0.02 1.83 16 44 H 0.12 2.09 7.86 -2.39 -0.02 2.07 16 45 H 0.39 8.47 9.05 -74.06 -0.67 7.80 16 46 H 0.07 1.92 7.64 -2.39 -0.02 1.90 16 47 H 0.08 2.02 7.66 -2.39 -0.02 2.00 16 48 H 0.13 4.67 6.27 -2.91 -0.02 4.65 16 49 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 50 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 51 H 0.11 6.21 6.16 -2.91 -0.02 6.20 16 52 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -73.89 428.79 0.78 -73.11 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.46 Total: 34.12 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 6.19 Total: -21.30 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -4.13 Total: -68.29 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.85 Total: -58.56 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -73.89 0.78 -73.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051373767.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.559 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds