Wall clock time and date at job start Tue Mar 31 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99823 * 2 1 4 4 N 1.34769 * 120.00220 * 180.02562 * 2 1 3 5 5 C 1.39928 * 120.00564 * 174.83405 * 4 2 1 6 6 C 1.38944 * 120.03051 * 326.35448 * 5 4 2 7 7 C 1.38136 * 120.07035 * 180.02562 * 6 5 4 8 8 C 1.38180 * 120.13998 * 359.95750 * 7 6 5 9 9 C 1.38901 * 120.06985 * 359.97438 * 8 7 6 10 10 N 1.39925 * 120.03740 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99696 * 146.77539 * 10 9 8 12 12 O 1.21282 * 120.00790 * 354.77868 * 11 10 9 13 13 C 1.50709 * 119.99627 * 174.78701 * 11 10 9 14 14 N 1.46894 * 109.46986 * 180.02562 * 13 11 10 15 15 C 1.46904 * 110.99882 * 293.94767 * 14 13 11 16 16 C 1.46902 * 111.00123 * 169.99814 * 14 13 11 17 17 C 1.50701 * 109.47036 * 189.99918 * 16 14 13 18 18 O 1.21275 * 120.00427 * 359.97438 * 17 16 14 19 19 N 1.34785 * 119.99524 * 180.02562 * 17 16 14 20 20 C 1.46496 * 120.00027 * 359.97438 * 19 17 16 21 21 C 1.46500 * 119.99804 * 180.02562 * 19 17 16 22 22 C 1.50698 * 109.47334 * 89.99198 * 21 19 17 23 23 H 1.07995 * 119.99863 * 0.02562 * 22 21 19 24 24 C 1.37880 * 119.99994 * 179.97438 * 22 21 19 25 25 N 1.31511 * 120.00059 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99964 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46968 * 60.00188 * 26 24 22 28 28 H 1.48501 * 109.47205 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47230 * 300.00523 * 26 24 22 30 30 C 1.38724 * 120.04055 * 146.60747 * 5 4 2 31 31 H 1.09004 * 109.46867 * 269.99864 * 1 2 3 32 32 H 1.09003 * 109.46922 * 29.99599 * 1 2 3 33 33 H 1.09000 * 109.47174 * 149.99703 * 1 2 3 34 34 H 0.97010 * 119.99749 * 354.83050 * 4 2 1 35 35 H 1.08009 * 119.96393 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.92810 * 179.97438 * 7 6 5 37 37 H 1.07996 * 119.96362 * 180.02562 * 8 7 6 38 38 H 0.96995 * 119.99526 * 326.50206 * 10 9 8 39 39 H 1.09007 * 109.46697 * 299.99510 * 13 11 10 40 40 H 1.09001 * 109.47142 * 59.99509 * 13 11 10 41 41 H 1.09004 * 109.47011 * 60.00638 * 15 14 13 42 42 H 1.09000 * 109.47373 * 179.97438 * 15 14 13 43 43 H 1.09002 * 109.47338 * 300.00185 * 15 14 13 44 44 H 1.08997 * 109.47194 * 309.99819 * 16 14 13 45 45 H 1.08993 * 109.46978 * 69.99562 * 16 14 13 46 46 H 1.08996 * 109.47539 * 90.00226 * 20 19 17 47 47 H 1.09003 * 109.46717 * 210.00290 * 20 19 17 48 48 H 1.08997 * 109.47294 * 330.00050 * 20 19 17 49 49 H 1.08996 * 109.47195 * 210.00259 * 21 19 17 50 50 H 1.09007 * 109.47018 * 329.99726 * 21 19 17 51 51 H 0.96995 * 120.00161 * 179.97438 * 25 24 22 52 52 H 1.07997 * 120.06711 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5759 -1.1696 -0.1096 6 6 4.2155 -0.2001 -0.8723 7 6 5.5926 -0.2022 -0.9810 8 6 6.3384 -1.1671 -0.3314 9 6 5.7052 -2.1381 0.4337 10 7 6.4611 -3.1146 1.0916 11 6 6.0471 -3.6011 2.2783 12 8 5.0719 -3.1268 2.8214 13 6 6.7961 -4.7346 2.9307 14 7 6.1504 -5.0792 4.2043 15 6 6.2710 -3.9790 5.1703 16 6 6.7018 -6.3250 4.7539 17 6 5.8588 -6.7765 5.9187 18 8 4.8941 -6.1246 6.2579 19 7 6.1777 -7.9045 6.5841 20 6 7.3434 -8.6917 6.1747 21 6 5.3579 -8.3438 7.7160 22 6 4.2588 -9.2474 7.2195 23 1 4.1792 -9.4723 6.1662 24 6 3.3556 -9.7878 8.1101 25 7 3.4529 -9.5143 9.3927 26 14 1.9936 -10.9084 7.4947 27 1 2.5909 -12.0925 6.8266 28 1 1.1626 -11.3536 8.6421 29 1 1.1443 -10.1695 6.5262 30 6 4.3215 -2.1430 0.5392 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6988 -2.0056 0.0748 35 1 3.6353 0.5558 -1.3807 36 1 6.0873 0.5522 -1.5747 37 1 7.4149 -1.1657 -0.4180 38 1 7.2811 -3.4442 0.6917 39 1 6.7863 -5.6031 2.2721 40 1 7.8263 -4.4304 3.1157 41 1 5.7927 -3.0867 4.7662 42 1 5.7842 -4.2603 6.1041 43 1 7.3250 -3.7733 5.3572 44 1 6.6983 -7.0952 3.9827 45 1 7.7240 -6.1525 5.0905 46 1 8.2248 -8.3424 6.7124 47 1 7.1705 -9.7431 6.4044 48 1 7.5021 -8.5754 5.1026 49 1 5.9810 -8.8862 8.4269 50 1 4.9198 -7.4744 8.2063 51 1 2.8173 -9.8942 10.0192 52 1 3.8265 -2.8998 1.1296 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052897881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:33 Heat of formation + Delta-G solvation = -78.811675 kcal Electronic energy + Delta-G solvation = -33650.640747 eV Core-core repulsion = 29036.042193 eV Total energy + Delta-G solvation = -4614.598554 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.194 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.87129 -41.17491 -40.62341 -39.28791 -37.52283 -36.43998 -36.27800 -35.17843 -34.70573 -31.81882 -31.46563 -30.57406 -29.58697 -28.86898 -28.62875 -27.16665 -25.40854 -24.30032 -23.79876 -23.20445 -21.69413 -21.10253 -19.98928 -19.34985 -18.67759 -18.26568 -18.09868 -17.77353 -17.27333 -17.01572 -16.91430 -16.80960 -16.50915 -16.44436 -16.18999 -15.61902 -15.43171 -15.32361 -14.97459 -14.88298 -14.53769 -14.34588 -14.16633 -13.94869 -13.74986 -13.68839 -13.45463 -13.40992 -13.19398 -13.12582 -13.00372 -12.94550 -12.76360 -12.68935 -12.57548 -12.52568 -12.41270 -12.15034 -11.82370 -11.69547 -11.23515 -10.92827 -10.84355 -10.63523 -10.42404 -9.45023 -9.37225 -9.20470 -8.98351 -8.21127 -6.35945 0.19474 0.31890 1.35894 1.41158 1.47318 1.48035 1.63639 1.79897 1.92508 2.11500 2.34243 2.46681 2.83745 3.06517 3.08103 3.68173 3.72846 3.78778 3.98758 4.19333 4.20482 4.22845 4.29349 4.33432 4.38505 4.39871 4.49262 4.53209 4.53705 4.58823 4.59131 4.62683 4.67146 4.78416 5.00522 5.01744 5.04203 5.18446 5.22474 5.25248 5.27822 5.35549 5.43966 5.55164 5.58581 5.83530 5.92976 5.96325 6.05102 6.08317 6.36030 6.49464 6.72613 6.87068 7.03504 7.19819 7.30693 7.59807 8.85434 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.001788 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.283260 B =15659.907637 C =17675.352068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.669 5.669 5 C 0.147 3.853 6 C -0.155 4.155 7 C -0.081 4.081 8 C -0.153 4.153 9 C 0.160 3.840 10 N -0.658 5.658 11 C 0.508 3.492 12 O -0.544 6.544 13 C 0.043 3.957 14 N -0.540 5.540 15 C 0.028 3.972 16 C 0.056 3.944 17 C 0.490 3.510 18 O -0.583 6.583 19 N -0.614 5.614 20 C 0.078 3.922 21 C 0.260 3.740 22 C -0.540 4.540 23 H 0.054 0.946 24 C 0.004 3.996 25 N -0.930 5.930 26 Si 0.968 3.032 27 H -0.257 1.257 28 H -0.279 1.279 29 H -0.280 1.280 30 C -0.167 4.167 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.424 0.576 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.432 0.568 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.100 0.900 49 H 0.023 0.977 50 H -0.008 1.008 51 H 0.266 0.734 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 12.924 -27.196 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.453 6.453 4 N -0.315 5.315 5 C 0.052 3.948 6 C -0.176 4.176 7 C -0.100 4.100 8 C -0.173 4.173 9 C 0.065 3.935 10 N -0.306 5.306 11 C 0.296 3.704 12 O -0.420 6.420 13 C -0.087 4.087 14 N -0.265 5.265 15 C -0.120 4.120 16 C -0.074 4.074 17 C 0.278 3.722 18 O -0.463 6.463 19 N -0.346 5.346 20 C -0.064 4.064 21 C 0.139 3.861 22 C -0.578 4.578 23 H 0.072 0.928 24 C -0.195 4.195 25 N -0.570 5.570 26 Si 0.792 3.208 27 H -0.181 1.181 28 H -0.204 1.204 29 H -0.206 1.206 30 C -0.190 4.190 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.262 0.738 35 H 0.140 0.860 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.273 0.727 39 H 0.161 0.839 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.118 0.882 49 H 0.041 0.959 50 H 0.010 0.990 51 H 0.075 0.925 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.437 14.140 -26.494 31.480 hybrid contribution -0.368 -0.891 0.682 1.181 sum 9.069 13.250 -25.813 30.399 Atomic orbital electron populations 1.21939 0.86998 1.06936 1.06381 1.21866 0.92652 0.82336 0.73617 1.90711 1.71838 1.32716 1.50053 1.43737 1.04906 1.10751 1.72113 1.17741 0.83717 0.96998 0.96392 1.21175 0.96039 0.99849 1.00513 1.21158 0.92446 0.98094 0.98290 1.21183 1.01564 0.93971 1.00611 1.17579 0.89748 0.91063 0.95140 1.43359 1.27503 1.39467 1.20297 1.21305 0.84767 0.83861 0.80422 1.90755 1.28411 1.59402 1.63396 1.22121 0.96992 0.97840 0.91740 1.61047 1.58178 1.03198 1.04116 1.22430 0.99364 0.94074 0.96146 1.22007 0.96342 0.93319 0.95724 1.21349 0.85576 0.80538 0.84724 1.90646 1.30924 1.56239 1.68458 1.48195 1.29529 1.24330 1.32585 1.21954 0.86418 0.96175 1.01854 1.18693 0.89724 0.93164 0.84542 1.21686 1.13536 1.28736 0.93891 0.92799 1.25897 1.00229 0.98403 0.94966 1.70047 1.38274 1.45757 1.02907 0.85468 0.78543 0.78999 0.77795 1.18115 1.20434 1.20569 1.20820 0.93671 1.02164 1.02309 0.87461 0.87859 0.87002 0.73767 0.85961 0.82630 0.82067 0.72747 0.83925 0.87542 0.91626 0.93308 0.93969 0.84791 0.88492 0.91176 0.91806 0.88185 0.95903 0.98952 0.92484 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.31 71.24 0.73 -0.88 16 2 C 0.50 10.12 7.68 87.66 0.67 10.80 16 3 O -0.57 -16.53 14.80 -3.04 -0.04 -16.58 16 4 N -0.67 -12.74 5.34 -303.57 -1.62 -14.36 16 5 C 0.15 3.38 6.27 38.13 0.24 3.62 16 6 C -0.15 -3.35 8.65 22.41 0.19 -3.16 16 7 C -0.08 -1.29 10.03 22.23 0.22 -1.07 16 8 C -0.15 -2.15 9.96 22.41 0.22 -1.93 16 9 C 0.16 3.00 6.27 38.13 0.24 3.24 16 10 N -0.66 -9.17 5.34 -303.56 -1.62 -10.79 16 11 C 0.51 10.78 7.29 87.66 0.64 11.42 16 12 O -0.54 -17.97 12.01 -3.03 -0.04 -18.01 16 13 C 0.04 0.67 5.45 85.56 0.47 1.13 16 14 N -0.54 -15.02 4.24 -931.63 -3.95 -18.97 16 15 C 0.03 0.88 8.85 127.69 1.13 2.01 16 16 C 0.06 1.41 4.00 85.56 0.34 1.75 16 17 C 0.49 20.19 7.37 87.66 0.65 20.84 16 18 O -0.58 -31.42 13.91 -3.01 -0.04 -31.46 16 19 N -0.61 -25.54 2.86 -851.14 -2.43 -27.97 16 20 C 0.08 2.11 10.24 127.77 1.31 3.41 16 21 C 0.26 14.26 5.16 85.63 0.44 14.70 16 22 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 23 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 24 C 0.00 0.22 5.46 84.66 0.46 0.68 16 25 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 26 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 30 C -0.17 -3.99 8.57 22.51 0.19 -3.80 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.42 5.65 8.82 -92.70 -0.82 4.83 16 35 H 0.12 2.86 6.43 -2.91 -0.02 2.84 16 36 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.43 1.92 8.82 -92.71 -0.82 1.10 16 39 H 0.14 1.24 7.93 -2.38 -0.02 1.22 16 40 H 0.11 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.07 2.27 5.88 -2.38 -0.01 2.26 16 42 H 0.05 1.98 5.82 -2.39 -0.01 1.97 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.13 2.42 7.19 -2.39 -0.02 2.41 16 45 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 48 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 49 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 50 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 51 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 52 H 0.12 3.33 6.43 -2.91 -0.02 3.32 16 Total: -1.00 -99.56 430.06 0.30 -99.26 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.66 Total: 16.90 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 8.39 Total: 31.43 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -9.34 Total: -129.18 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -0.12 Total: -66.05 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -99.56 0.30 -99.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052897881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.449 kcal (2) G-P(sol) polarization free energy of solvation -99.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds