Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 120.00484 * 2 1 4 4 O 1.21589 * 120.00542 * 174.19624 * 3 2 1 5 5 C 1.47518 * 119.99723 * 354.19988 * 3 2 1 6 6 C 1.39686 * 120.20238 * 307.18815 * 5 3 2 7 7 C 1.37799 * 119.92583 * 180.02562 * 6 5 3 8 8 C 1.38558 * 120.32956 * 0.02562 * 7 6 5 9 9 C 1.38031 * 120.40580 * 0.02562 * 8 7 6 10 10 C 1.38849 * 120.06678 * 359.97438 * 9 8 7 11 11 N 1.39286 * 120.16292 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00015 * 325.49354 * 11 10 9 13 13 O 1.21270 * 120.00383 * 4.03164 * 12 11 10 14 14 C 1.50706 * 119.99858 * 184.02887 * 12 11 10 15 15 S 1.81003 * 109.46897 * 179.97438 * 14 12 11 16 16 C 1.76210 * 99.99896 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99377 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99649 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99573 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47292 * 59.99807 * 20 18 16 22 22 H 1.48501 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46657 * 299.99861 * 20 18 16 24 24 C 1.46504 * 119.99806 * 180.02562 * 2 1 3 25 25 C 1.52996 * 109.47462 * 59.99555 * 24 2 1 26 26 C 1.52998 * 109.47439 * 180.02562 * 25 24 2 27 27 C 1.53001 * 109.46906 * 59.99833 * 26 25 24 28 28 C 1.52997 * 109.47517 * 300.00532 * 27 26 25 29 29 C 1.52998 * 109.47467 * 59.99811 * 28 27 26 30 30 H 1.09000 * 109.47483 * 94.72062 * 1 2 3 31 31 H 1.08996 * 109.47493 * 214.72331 * 1 2 3 32 32 H 1.08998 * 109.47112 * 334.71974 * 1 2 3 33 33 H 1.07998 * 120.03572 * 0.03789 * 6 5 3 34 34 H 1.08001 * 119.83430 * 180.29142 * 7 6 5 35 35 H 1.08004 * 119.80100 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.96800 * 179.97438 * 9 8 7 37 37 H 0.97007 * 120.00153 * 145.49425 * 11 10 9 38 38 H 1.08992 * 109.47531 * 300.00048 * 14 12 11 39 39 H 1.09001 * 109.47053 * 60.00299 * 14 12 11 40 40 H 0.96999 * 119.99424 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.47027 * 180.02562 * 24 2 1 42 42 H 1.09001 * 109.47122 * 300.00522 * 25 24 2 43 43 H 1.09010 * 109.46830 * 60.00259 * 25 24 2 44 44 H 1.09003 * 109.47028 * 300.00736 * 26 25 24 45 45 H 1.08993 * 109.47561 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46782 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.46540 * 60.00604 * 27 26 25 48 48 H 1.09001 * 109.46786 * 299.99491 * 28 27 26 49 49 H 1.09002 * 109.47252 * 180.02562 * 28 27 26 50 50 H 1.08995 * 109.47011 * 180.02562 * 29 28 27 51 51 H 1.09003 * 109.47028 * 59.99660 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3501 1.1699 0.1065 5 6 1.4070 2.4414 -0.1291 6 6 0.5122 2.6341 -1.1843 7 6 -0.1680 3.8269 -1.2997 8 6 0.0311 4.8383 -0.3739 9 6 0.9128 4.6630 0.6735 10 6 1.6070 3.4678 0.8058 11 7 2.4968 3.2886 1.8623 12 6 3.2182 4.3310 2.3200 13 8 3.0399 5.4396 1.8619 14 6 4.2463 4.1189 3.4013 15 16 5.0409 5.6966 3.7960 16 6 6.1621 5.1694 5.0490 17 1 6.1939 4.1306 5.3428 18 6 7.0043 6.0892 5.6583 19 7 6.9650 7.3553 5.3005 20 14 8.1934 5.5301 6.9861 21 1 9.1186 4.5128 6.4257 22 1 8.9745 6.6953 7.4736 23 1 7.4318 4.9380 8.1151 24 6 2.1974 -1.2688 -0.0006 25 6 1.8277 -2.0706 -1.2501 26 6 2.5922 -3.3959 -1.2503 27 6 2.2220 -4.1984 -0.0013 28 6 2.5916 -3.3966 1.2482 29 6 1.8272 -2.0713 1.2485 30 1 -0.3634 -0.0846 -1.0241 31 1 -0.3634 -0.8446 0.5853 32 1 -0.3633 0.9292 0.4389 33 1 0.3536 1.8490 -1.9087 34 1 -0.8630 3.9725 -2.1135 35 1 -0.5063 5.7700 -0.4728 36 1 1.0629 5.4563 1.3909 37 1 2.5974 2.4135 2.2686 38 1 3.7597 3.7236 4.2929 39 1 4.9984 3.4107 3.0537 40 1 7.5534 7.9981 5.7267 41 1 3.2691 -1.0696 0.0000 42 1 0.7561 -2.2697 -1.2501 43 1 2.0911 -1.4986 -2.1399 44 1 3.6639 -3.1971 -1.2499 45 1 2.3292 -3.9669 -2.1407 46 1 2.7663 -5.1428 -0.0018 47 1 1.1503 -4.3972 -0.0017 48 1 3.6634 -3.1979 1.2485 49 1 2.3283 -3.9685 2.1380 50 1 2.0908 -1.5000 2.1384 51 1 0.7554 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055825342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -54.217897 kcal Electronic energy + Delta-G solvation = -32009.382952 eV Core-core repulsion = 27806.310984 eV Total energy + Delta-G solvation = -4203.071968 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.08527 -39.93046 -38.55375 -37.77573 -35.41586 -34.57986 -32.42952 -31.71557 -31.18533 -30.63947 -29.77725 -28.35424 -27.20551 -25.49250 -24.31937 -23.15807 -23.00049 -22.21930 -20.35672 -20.18203 -19.65463 -18.11756 -17.58901 -17.32470 -16.91605 -16.52880 -15.75041 -15.58696 -15.23867 -15.06220 -14.80052 -14.60841 -14.53944 -14.37089 -14.22264 -13.93757 -13.74468 -13.45358 -13.26087 -13.15521 -12.93369 -12.76992 -12.64067 -12.58741 -12.55289 -12.14451 -11.95657 -11.63957 -11.55953 -11.51973 -11.06550 -11.04710 -11.03149 -10.77648 -10.73174 -10.66473 -10.41031 -9.94567 -9.84750 -9.50811 -9.05714 -9.02698 -8.92362 -8.27567 -8.17767 -6.51283 -6.21648 -3.92697 0.85062 1.24327 2.47043 2.66297 2.84378 2.96017 3.24531 3.27207 3.30365 3.59518 3.70092 4.16405 4.19950 4.34387 4.37219 4.49125 4.67860 4.72995 4.77899 4.81363 4.87373 4.98642 4.99907 5.04629 5.08366 5.13659 5.15766 5.19447 5.20882 5.32416 5.37389 5.38758 5.40062 5.59754 5.62136 5.64574 5.69114 5.71283 5.80838 5.81760 5.84107 5.91718 6.00813 6.10108 6.11461 6.14607 6.29018 6.36399 6.47061 6.91591 7.04500 7.44744 7.59919 7.91828 8.35204 8.37478 9.23660 10.85773 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008674 B = 0.002362 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.366213 B =11852.178762 C =14643.623371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.562 3.438 4 O -0.522 6.522 5 C -0.168 4.168 6 C -0.070 4.070 7 C -0.148 4.148 8 C -0.078 4.078 9 C -0.129 4.129 10 C 0.208 3.792 11 N -0.673 5.673 12 C 0.537 3.463 13 O -0.495 6.495 14 C -0.153 4.153 15 S -0.055 6.055 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.139 3.861 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.127 4.127 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.409 0.591 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.269 0.731 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 -21.968 -13.786 32.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.342 5.342 3 C 0.350 3.650 4 O -0.397 6.397 5 C -0.174 4.174 6 C -0.089 4.089 7 C -0.167 4.167 8 C -0.097 4.097 9 C -0.149 4.149 10 C 0.110 3.890 11 N -0.317 5.317 12 C 0.326 3.674 13 O -0.367 6.367 14 C -0.304 4.304 15 S 0.171 5.829 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.036 3.964 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.156 4.156 29 C -0.166 4.166 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.245 0.755 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.574 -19.911 -14.389 30.797 hybrid contribution 0.938 -2.099 1.441 2.714 sum -17.636 -22.010 -12.948 31.034 Atomic orbital electron populations 1.21852 0.79513 1.03507 1.01876 1.47859 1.07043 1.05466 1.73855 1.18361 0.87086 0.83423 0.76114 1.90848 1.13598 1.86989 1.48303 1.19586 1.03810 0.95357 0.98654 1.20961 0.94092 0.97865 0.95985 1.20991 1.01712 0.93601 1.00404 1.21244 0.96331 0.98729 0.93371 1.21426 0.95469 0.97450 1.00569 1.17668 0.89554 0.93902 0.87854 1.43535 1.40535 1.14013 1.33660 1.20522 0.80570 0.83672 0.82684 1.90686 1.65672 1.23378 1.56972 1.23543 0.99618 1.08728 0.98473 1.85358 1.45447 1.02586 1.49483 1.22818 1.24333 0.97394 1.23859 0.90886 1.24989 0.96866 0.94513 0.97168 1.70004 1.37545 1.01667 1.41073 0.86212 0.80178 0.78219 0.80833 1.19888 1.20790 1.19930 1.21146 0.98393 0.82103 0.94769 1.21865 1.00688 0.96176 0.97672 1.21502 1.00594 0.95416 0.98049 1.21562 1.01335 0.98389 0.94518 1.21502 1.00655 0.95404 0.98025 1.21879 1.00635 0.96254 0.97797 0.92519 0.91061 0.90392 0.85594 0.85574 0.85271 0.83260 0.75481 0.88849 0.88571 0.92101 0.87952 0.91624 0.91643 0.91606 0.91652 0.91839 0.91993 0.91540 0.91570 0.91406 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 8.31 59.84 0.50 0.95 16 2 N -0.61 -5.56 2.76 -175.17 -0.48 -6.05 16 3 C 0.56 7.20 6.43 -12.48 -0.08 7.12 16 4 O -0.52 -8.77 15.81 5.29 0.08 -8.69 16 5 C -0.17 -2.10 4.53 -104.81 -0.47 -2.57 16 6 C -0.07 -0.68 8.10 -39.20 -0.32 -1.00 16 7 C -0.15 -1.35 10.02 -39.62 -0.40 -1.75 16 8 C -0.08 -0.85 10.03 -39.54 -0.40 -1.24 16 9 C -0.13 -1.83 8.68 -39.43 -0.34 -2.17 16 10 C 0.21 3.04 6.30 -83.48 -0.53 2.52 16 11 N -0.67 -10.62 4.72 -9.69 -0.05 -10.67 16 12 C 0.54 10.54 7.69 -10.98 -0.08 10.45 16 13 O -0.49 -11.11 13.27 5.57 0.07 -11.04 16 14 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 15 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.14 1.18 2.52 -67.93 -0.17 1.01 16 25 C -0.13 -0.84 5.20 -26.73 -0.14 -0.97 16 26 C -0.12 -0.70 5.92 -26.73 -0.16 -0.85 16 27 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 28 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 29 C -0.13 -0.90 5.17 -26.73 -0.14 -1.04 16 30 H 0.06 0.27 7.75 -51.93 -0.40 -0.14 16 31 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 32 H 0.08 0.51 6.40 -51.93 -0.33 0.17 16 33 H 0.13 0.93 7.38 -52.49 -0.39 0.55 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.15 2.41 6.19 -52.49 -0.32 2.08 16 37 H 0.41 5.67 8.01 -40.82 -0.33 5.34 16 38 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 39 H 0.10 1.95 8.14 -51.91 -0.42 1.53 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.10 1.14 6.91 -51.93 -0.36 0.78 16 42 H 0.07 0.37 7.67 -51.93 -0.40 -0.03 16 43 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.39 6.69 -51.93 -0.35 0.05 16 LS Contribution 420.22 15.07 6.33 6.33 Total: -1.00 -35.55 420.22 -11.00 -46.54 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.83 Total: 3.60 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.63 Total: -7.35 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.20 Total: -42.29 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.55 -11.00 -46.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055825342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.673 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds