Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 120.00484 * 2 1 4 4 O 1.21589 * 120.00542 * 174.19624 * 3 2 1 5 5 C 1.47518 * 119.99723 * 354.19988 * 3 2 1 6 6 C 1.39686 * 120.20238 * 307.18815 * 5 3 2 7 7 C 1.37799 * 119.92583 * 180.02562 * 6 5 3 8 8 C 1.38558 * 120.32956 * 0.02562 * 7 6 5 9 9 C 1.38031 * 120.40580 * 0.02562 * 8 7 6 10 10 C 1.38849 * 120.06678 * 359.97438 * 9 8 7 11 11 N 1.39286 * 120.16292 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00015 * 325.49354 * 11 10 9 13 13 O 1.21270 * 120.00383 * 4.03164 * 12 11 10 14 14 C 1.50706 * 119.99858 * 184.02887 * 12 11 10 15 15 S 1.81003 * 109.46897 * 179.97438 * 14 12 11 16 16 C 1.76210 * 99.99896 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99377 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99649 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99573 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47292 * 59.99807 * 20 18 16 22 22 H 1.48501 * 109.47020 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46657 * 299.99861 * 20 18 16 24 24 C 1.46504 * 119.99806 * 180.02562 * 2 1 3 25 25 C 1.52996 * 109.47462 * 59.99555 * 24 2 1 26 26 C 1.52998 * 109.47439 * 180.02562 * 25 24 2 27 27 C 1.53001 * 109.46906 * 59.99833 * 26 25 24 28 28 C 1.52997 * 109.47517 * 300.00532 * 27 26 25 29 29 C 1.52998 * 109.47467 * 59.99811 * 28 27 26 30 30 H 1.09000 * 109.47483 * 94.72062 * 1 2 3 31 31 H 1.08996 * 109.47493 * 214.72331 * 1 2 3 32 32 H 1.08998 * 109.47112 * 334.71974 * 1 2 3 33 33 H 1.07998 * 120.03572 * 0.03789 * 6 5 3 34 34 H 1.08001 * 119.83430 * 180.29142 * 7 6 5 35 35 H 1.08004 * 119.80100 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.96800 * 179.97438 * 9 8 7 37 37 H 0.97007 * 120.00153 * 145.49425 * 11 10 9 38 38 H 1.08992 * 109.47531 * 300.00048 * 14 12 11 39 39 H 1.09001 * 109.47053 * 60.00299 * 14 12 11 40 40 H 0.96999 * 119.99424 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.47027 * 180.02562 * 24 2 1 42 42 H 1.09001 * 109.47122 * 300.00522 * 25 24 2 43 43 H 1.09010 * 109.46830 * 60.00259 * 25 24 2 44 44 H 1.09003 * 109.47028 * 300.00736 * 26 25 24 45 45 H 1.08993 * 109.47561 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.46782 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.46540 * 60.00604 * 27 26 25 48 48 H 1.09001 * 109.46786 * 299.99491 * 28 27 26 49 49 H 1.09002 * 109.47252 * 180.02562 * 28 27 26 50 50 H 1.08995 * 109.47011 * 180.02562 * 29 28 27 51 51 H 1.09003 * 109.47028 * 59.99660 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3501 1.1699 0.1065 5 6 1.4070 2.4414 -0.1291 6 6 0.5122 2.6341 -1.1843 7 6 -0.1680 3.8269 -1.2997 8 6 0.0311 4.8383 -0.3739 9 6 0.9128 4.6630 0.6735 10 6 1.6070 3.4678 0.8058 11 7 2.4968 3.2886 1.8623 12 6 3.2182 4.3310 2.3200 13 8 3.0399 5.4396 1.8619 14 6 4.2463 4.1189 3.4013 15 16 5.0409 5.6966 3.7960 16 6 6.1621 5.1694 5.0490 17 1 6.1939 4.1306 5.3428 18 6 7.0043 6.0892 5.6583 19 7 6.9650 7.3553 5.3005 20 14 8.1934 5.5301 6.9861 21 1 9.1186 4.5128 6.4257 22 1 8.9745 6.6953 7.4736 23 1 7.4318 4.9380 8.1151 24 6 2.1974 -1.2688 -0.0006 25 6 1.8277 -2.0706 -1.2501 26 6 2.5922 -3.3959 -1.2503 27 6 2.2220 -4.1984 -0.0013 28 6 2.5916 -3.3966 1.2482 29 6 1.8272 -2.0713 1.2485 30 1 -0.3634 -0.0846 -1.0241 31 1 -0.3634 -0.8446 0.5853 32 1 -0.3633 0.9292 0.4389 33 1 0.3536 1.8490 -1.9087 34 1 -0.8630 3.9725 -2.1135 35 1 -0.5063 5.7700 -0.4728 36 1 1.0629 5.4563 1.3909 37 1 2.5974 2.4135 2.2686 38 1 3.7597 3.7236 4.2929 39 1 4.9984 3.4107 3.0537 40 1 7.5534 7.9981 5.7267 41 1 3.2691 -1.0696 0.0000 42 1 0.7561 -2.2697 -1.2501 43 1 2.0911 -1.4986 -2.1399 44 1 3.6639 -3.1971 -1.2499 45 1 2.3292 -3.9669 -2.1407 46 1 2.7663 -5.1428 -0.0018 47 1 1.1503 -4.3972 -0.0017 48 1 3.6634 -3.1979 1.2485 49 1 2.3283 -3.9685 2.1380 50 1 2.0908 -1.5000 2.1384 51 1 0.7554 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055825342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -75.697493 kcal Electronic energy + Delta-G solvation = -32010.314377 eV Core-core repulsion = 27806.310984 eV Total energy + Delta-G solvation = -4204.003393 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.11523 -41.02037 -39.52315 -38.68967 -36.26893 -35.80051 -34.62641 -32.56062 -32.00690 -31.70905 -30.45975 -29.66332 -27.84684 -27.69569 -25.15398 -24.20856 -23.55529 -22.96863 -21.71384 -20.89363 -20.36973 -19.91365 -18.82596 -18.29739 -18.06480 -17.68114 -16.91631 -16.83208 -16.49401 -16.37594 -16.14803 -15.66358 -15.42498 -15.24964 -15.06756 -14.96803 -14.84659 -14.59096 -14.49805 -14.23327 -13.92714 -13.77142 -13.58127 -13.31085 -13.22507 -13.15593 -13.09778 -12.94341 -12.89722 -12.68257 -12.53364 -12.11856 -12.06662 -11.80762 -11.63095 -11.53778 -11.29776 -11.20230 -11.16617 -11.02309 -10.88993 -10.38274 -9.95778 -9.67113 -9.25926 -8.72465 -8.38501 -6.17638 -0.10072 0.29102 1.15377 1.37976 1.41502 1.43857 1.51994 1.52967 1.88798 2.04461 2.22795 2.74125 2.95533 3.20664 3.41170 3.66940 3.73930 3.80124 3.86048 3.97935 4.12436 4.14796 4.17835 4.24586 4.29883 4.34938 4.38442 4.41405 4.45315 4.47909 4.51092 4.55974 4.67707 4.69884 4.83836 4.90398 4.94283 5.10279 5.10777 5.14478 5.19524 5.20498 5.26282 5.32845 5.37625 5.38771 5.39783 5.50255 5.51490 5.58272 5.93235 6.11481 6.15860 6.27176 6.91106 7.01220 7.02373 8.70604 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008674 B = 0.002362 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.366213 B =11852.178762 C =14643.623371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.557 3.443 4 O -0.576 6.576 5 C -0.169 4.169 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.077 4.077 9 C -0.151 4.151 10 C 0.171 3.829 11 N -0.657 5.657 12 C 0.539 3.461 13 O -0.531 6.531 14 C -0.130 4.130 15 S -0.135 6.135 16 C -0.551 4.551 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.909 5.909 20 Si 0.999 3.001 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.261 1.261 24 C 0.136 3.864 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.122 4.122 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.416 0.584 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.273 0.727 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.049 0.951 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.664 -24.983 -15.052 36.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C 0.346 3.654 4 O -0.456 6.456 5 C -0.175 4.175 6 C -0.079 4.079 7 C -0.146 4.146 8 C -0.095 4.095 9 C -0.171 4.171 10 C 0.075 3.925 11 N -0.302 5.302 12 C 0.327 3.673 13 O -0.407 6.407 14 C -0.281 4.281 15 S 0.092 5.908 16 C -0.699 4.699 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.545 5.545 20 Si 0.821 3.179 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.185 1.185 24 C 0.033 3.967 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.156 4.156 29 C -0.160 4.160 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.253 0.747 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.222 -22.993 -15.680 34.998 hybrid contribution 1.563 -1.258 1.685 2.620 sum -19.658 -24.251 -13.995 34.211 Atomic orbital electron populations 1.22151 0.77063 1.04356 1.03913 1.47931 1.08484 1.04574 1.71781 1.18513 0.86500 0.84495 0.75889 1.90825 1.15822 1.87735 1.51194 1.19680 1.04248 0.94577 0.98976 1.21369 0.92497 0.99016 0.95027 1.21455 1.00904 0.92132 1.00124 1.21551 0.95257 1.00336 0.92396 1.21336 0.97369 0.96734 1.01694 1.17894 0.90627 0.95281 0.88667 1.43178 1.40039 1.13112 1.33877 1.20196 0.80667 0.84028 0.82401 1.90672 1.66921 1.24847 1.58258 1.23349 0.99931 1.04693 1.00131 1.85460 1.46798 1.08311 1.50191 1.23160 1.24700 0.97950 1.24056 0.90092 1.26132 0.98728 0.94430 0.99708 1.70164 1.38660 1.03109 1.42605 0.84995 0.77469 0.78006 0.77471 1.18895 1.20042 1.18506 1.21198 0.96560 0.82187 0.96736 1.21808 1.02006 0.95873 0.95873 1.21514 0.99639 0.95343 0.99077 1.21540 1.02275 0.98177 0.93338 1.21511 0.99607 0.95294 0.99220 1.21837 1.01914 0.96080 0.96150 0.89937 0.89087 0.90623 0.82360 0.81327 0.83037 0.86247 0.74651 0.86685 0.87947 0.91834 0.91537 0.89408 0.92561 0.93161 0.90225 0.91262 0.90528 0.93184 0.90652 0.93197 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.31 127.77 1.06 1.64 16 2 N -0.60 -10.06 2.76 -826.38 -2.28 -12.34 16 3 C 0.56 14.22 6.43 86.69 0.56 14.78 16 4 O -0.58 -20.30 15.81 -4.00 -0.06 -20.37 16 5 C -0.17 -4.07 4.53 -19.99 -0.09 -4.16 16 6 C -0.06 -0.97 8.10 22.52 0.18 -0.79 16 7 C -0.13 -1.82 10.02 22.24 0.22 -1.60 16 8 C -0.08 -1.53 10.03 22.30 0.22 -1.31 16 9 C -0.15 -4.39 8.68 22.37 0.19 -4.20 16 10 C 0.17 5.14 6.30 38.60 0.24 5.39 16 11 N -0.66 -21.84 4.72 -302.95 -1.43 -23.27 16 12 C 0.54 22.40 7.69 87.66 0.67 23.07 16 13 O -0.53 -25.54 13.27 -3.00 -0.04 -25.58 16 14 C -0.13 -5.69 6.16 71.24 0.44 -5.25 16 15 S -0.13 -7.75 20.57 -56.49 -1.16 -8.91 16 16 C -0.55 -32.53 9.50 67.95 0.65 -31.89 16 17 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 18 C 0.02 0.88 5.49 84.86 0.47 1.35 16 19 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 20 Si 1.00 44.70 29.55 68.60 2.03 46.72 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 24 C 0.14 2.21 2.52 44.99 0.11 2.33 16 25 C -0.12 -1.31 5.20 30.59 0.16 -1.15 16 26 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 27 C -0.12 -0.99 5.92 30.59 0.18 -0.80 16 28 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 29 C -0.12 -1.57 5.17 30.60 0.16 -1.41 16 30 H 0.08 0.35 7.75 -2.39 -0.02 0.33 16 31 H 0.09 0.47 6.44 -2.39 -0.02 0.46 16 32 H 0.08 0.74 6.40 -2.39 -0.02 0.73 16 33 H 0.16 1.54 7.38 -2.91 -0.02 1.52 16 34 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.12 4.18 6.19 -2.91 -0.02 4.16 16 37 H 0.42 12.16 8.01 -92.70 -0.74 11.42 16 38 H 0.12 4.47 8.14 -2.40 -0.02 4.45 16 39 H 0.10 4.33 8.14 -2.40 -0.02 4.31 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.07 1.59 6.91 -2.39 -0.02 1.57 16 42 H 0.09 0.61 7.67 -2.39 -0.02 0.60 16 43 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 0.76 6.69 -2.39 -0.02 0.74 16 Total: -1.00 -83.66 420.22 3.33 -80.33 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.20 Total: 26.09 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.79 Total: -6.21 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.43 Total: -92.06 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -0.10 Total: -45.95 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal Total: -83.66 3.33 -80.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055825342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.631 kcal (2) G-P(sol) polarization free energy of solvation -83.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds